EWM29355.1, cds1304 (CDS) Nannochloropsis gaditana

Overview
NameEWM29355.1
Unique Namecds1304
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:293139..293468 +
Alignment locationCM002457.1:293565..293670 +
Alignment locationCM002457.1:293766..294028 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29355.1
Productredoxin domain protein
Orig transcript idgnl|cribi|Naga_100028g24.3291.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:293139..293468 +
CM002457.1supercontigCM002457.1:293565..293670 +
CM002457.1supercontigCM002457.1:293766..294028 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
GO:0008152metabolic process
GO:0019725cellular homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR013740Redoxin
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|585111883|gb|EWM29355.1| (redoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 481.485 bits (1238), Expect = 5.111e-172
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MVQRHFEGQFPLPHHENLFKYLRIHICGDEILYRDIPWALAGAAVTLEALNHYDSDKTMPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            MVQRHFEGQFPLPHHENLFKYLRIHICGDEILYRDIPWALAGAAVTLEALNHYDSDKTMPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL
Sbjct:    1 MVQRHFEGQFPLPHHENLFKYLRIHICGDEILYRDIPWALAGAAVTLEALNHYDSDKTMPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|553185318|ref|XP_005854233.1| (redoxin domain protein [Nannochloropsis gaditana CCMP526] >gi|422294824|gb|EKU22124.1| redoxin domain protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 353.984 bits (907), Expect = 1.669e-122
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 0
Query:   59 MPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            MPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSV SW+LVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL
Sbjct:    1 MPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVRSWQLVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 174          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|1082697953|gb|OGA20086.1| (peroxiredoxin [Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19] >gi|1082731546|gb|OGA50781.1| peroxiredoxin [Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_63_13])

HSP 1 Score: 136.732 bits (343), Expect = 5.508e-37
Identity = 75/175 (42.86%), Postives = 106/175 (60.57%), Query Frame = 0
Query:   59 MPSQVGDLFPNVDLW-VLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            M  + GD  P+  L    E   +   P  P  V   +  KGK+ VIF G+PG +TP CS  HVPGF+    +L+AKG+D+++ I+  DAFVM A+ R     +Q+    +  L DG+   TK L +ELD +ARG+GMRMQRFAM+V  DGV++D+ V+ +G  + S AE VL +L
Sbjct:    1 MTIKAGDKLPDGKLTETTEFDTAAGCPMNPQEVDVIQATKGKKVVIF-GVPGAYTPTCSAKHVPGFVSNHDKLKAKGVDEVWCIAVNDAFVMGAWGR-----EQKAAGKVRMLGDGSAEYTKKLGLELDLTARGLGMRMQRFAMIVQ-DGVVKDVAVEAAGKFEVSAAEAVLGKL 168          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|654921185|ref|WP_028371747.1| (peroxiredoxin [Burkholderia sp. UYPR1.413])

HSP 1 Score: 136.346 bits (342), Expect = 7.274e-37
Identity = 77/171 (45.03%), Postives = 104/171 (60.82%), Query Frame = 0
Query:   62 QVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            Q G+  P   ++ L     +     P S    E   GKR VIF G+PG FTP CS  HVPG++E A +L+A GID+I+ +S  DAFVM A+AR      QR    +  +ADG+ A TKAL +E D SARGMG+R QR+AMVV+ DGV++ L V+  G  + S A ++L+ L
Sbjct:    3 QTGEKLPQATVYELIEDEREGCTIGPNSFDVREQTAGKRVVIF-GLPGAFTPTCSAKHVPGYVEQAEKLRAAGIDEIWCVSVNDAFVMGAWAR-----DQRTSGKVRMMADGSAAFTKALGLEQDLSARGMGIRSQRYAMVVD-DGVVKTLHVEAPGKFEVSDAASILATL 166          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|1197215672|ref|WP_086466305.1| (peroxiredoxin [Oceanibaculum sp. L54-1-50])

HSP 1 Score: 135.961 bits (341), Expect = 9.170e-37
Identity = 80/174 (45.98%), Postives = 109/174 (62.64%), Query Frame = 0
Query:   59 MPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            M  +VGD  P+V L V + A   N+      V + +  KGK+ V+F  +PG FTP CS  HVPGF+E A  L+ KG+D I  +S  DAFVMDA+A+   +D +     I  LADG+ A TKA+ +ELD  ARGMG+R QR+AMVV+ DG +  L V+  G  + S AEN+L++L
Sbjct:    1 MTIKVGDKIPSVTLQV-KTADGINE------VSTDDFFKGKKVVLF-ALPGAFTPTCSAKHVPGFVEKAAELKGKGVDTIACLSVNDAFVMDAWAKDQKSDGK-----IVMLADGSAAFTKAVGLELDLVARGMGVRSQRYAMVVD-DGKVSRLEVEEPGAFQVSSAENILAKL 160          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|1095312760|emb|SEJ70619.1| (Peroxiredoxin [Paraburkholderia diazotrophica])

HSP 1 Score: 135.961 bits (341), Expect = 1.039e-36
Identity = 77/171 (45.03%), Postives = 105/171 (61.40%), Query Frame = 0
Query:   62 QVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            QVG+  P   ++ L     +     P S    E   GKR VIF G+PG FTP CS  HVPG++E A +L+A GID+I+ +S  DAFVM A+AR      QR    +  +ADG+ A T+AL +E D SARGMG+R QR+AMVV+ DGV++ L V+  G  + S A ++L+ L
Sbjct:    3 QVGEKLPQATVYELIEDEREGCTIGPNSFDVREQTAGKRVVIF-GLPGAFTPTCSAKHVPGYVEQAEKLRAVGIDEIWCVSVNDAFVMGAWAR-----DQRTSGKVRMMADGSAAFTRALGLEQDLSARGMGIRSQRYAMVVD-DGVVKTLHVEAPGKFEVSDATSILATL 166          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|1204999227|ref|WP_087735229.1| (peroxiredoxin [Paraburkholderia piptadeniae] >gi|1132095707|emb|SIT42167.1| putative Peroxiredoxin [Paraburkholderia piptadeniae])

HSP 1 Score: 135.576 bits (340), Expect = 1.636e-36
Identity = 75/171 (43.86%), Postives = 105/171 (61.40%), Query Frame = 0
Query:   62 QVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            Q+G+  P   ++ L     +     P S    E   GKR VIF G+PG FTP CS  HVPG++E A + +A GID+I+ +S  DAFVM A+AR     +QR    +  +ADG+ A T+AL +E D SARGMG+R QR+AMVV+ DGV++ L V+  G  + S A ++L+ L
Sbjct:    3 QIGEKLPQATVYELIGDGREGCTIGPNSFDVREQTAGKRVVIF-GLPGAFTPTCSAKHVPGYVEQAEKFRAAGIDEIWCVSVNDAFVMGAWAR-----EQRTSGKVRMMADGSAAFTRALGLEQDLSARGMGIRSQRYAMVVD-DGVVKTLYVEAPGKFEVSDAASILATL 166          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|653236605|ref|WP_027442326.1| (peroxiredoxin [Porphyrobacter cryptus])

HSP 1 Score: 134.42 bits (337), Expect = 3.554e-36
Identity = 78/174 (44.83%), Postives = 100/174 (57.47%), Query Frame = 0
Query:   59 MPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            M   VGD  P+V L           P  P  V + E   GKR  +F  +PG FTP CS  H+PGF+E A  L+AKG+D+I   +  DAFVM+A+ +  G+D       IT LADGN    +AL + +D S  GMG R QRF+MVVN DGV+E L V+  G  K S AE +LS+L
Sbjct:    1 MTIAVGDKLPDVTLI-------KATPEGPQPVKTSEYFAGKRVALF-SVPGAFTPTCSAKHLPGFVEKAAELKAKGVDEIVGTAVNDAFVMNAWNKAAGSDD------ITMLADGNGEFAEALGLTMDASGYGMGKRGQRFSMVVN-DGVVEQLNVEAPGDFKVSSAEYMLSQL 159          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|1197797251|ref|WP_086735700.1| (peroxiredoxin [Porphyrobacter colymbi])

HSP 1 Score: 133.65 bits (335), Expect = 5.781e-36
Identity = 78/174 (44.83%), Postives = 101/174 (58.05%), Query Frame = 0
Query:   59 MPSQVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            M   VGD  P V L           P  P +V S E   GKR  +F  +PG FTP CS  H+PGF+E A  L+AKG+D+I   +  DAFVM A+ +  G+D      AIT LADGN    KA+ + +DGS  GMG R QRF+MV+N DGV+E L V+  G  + S AE++L +L
Sbjct:    1 MTISVGDKIPEVTLV-------KATPEGPQAVKSSEYFAGKRVALF-SVPGAFTPTCSAKHLPGFVEKAEDLKAKGVDEIVGTAVNDAFVMGAWNKAQGSD------AITMLADGNADFVKAVGLTMDGSGFGMGTRGQRFSMVIN-DGVVEQLNVEEPGDFRVSSAEHMLGQL 159          
BLAST of EWM29355.1 vs. NCBI_GenBank
Match: gi|983436962|ref|WP_060599653.1| (peroxiredoxin [Paraburkholderia caribensis] >gi|954636769|gb|ALP61913.1| peroxiredoxin [Paraburkholderia caribensis] >gi|1015462002|gb|AMV43779.1| peroxiredoxin [Paraburkholderia caribensis])

HSP 1 Score: 134.035 bits (336), Expect = 6.454e-36
Identity = 76/171 (44.44%), Postives = 105/171 (61.40%), Query Frame = 0
Query:   62 QVGDLFPNVDLWVLEPAHSDNKPRQPVSVHSWELVKGKRRVIFVGIPGPFTPGCSKSHVPGFIETALRLQAKGIDDIYVISTADAFVMDAFARTLGTDKQRQPLAITFLADGNHALTKALDMELDGSARGMGMRMQRFAMVVNGDGVIEDLLVDPSGHIKFSRAENVLSRL 232
            QVG+  P   ++ L     +     P S    E   GKR VIF G+PG FTP CS  HVPG++E A +L+A GID+I+ +S  DAFVM A+AR   T  +     +  +ADG+ A T+AL +E D SARGMG+R QR+AMVV+ DGV++ L V+  G  + S A ++L+ L
Sbjct:    3 QVGEKLPQATVYELIEDEREGCTIGPNSFDVREQTAGKRVVIF-GLPGAFTPTCSAKHVPGYVEQAEKLRAAGIDEIWCVSVNDAFVMGAWARDQHTSGK-----VRMMADGSAAFTRALGLEQDLSARGMGIRSQRYAMVVD-DGVVKTLHVEAPGKFEVSDAASILATL 166          
The following BLAST results are available for this feature:
BLAST of EWM29355.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111883|gb|EWM29355.1|5.111e-172100.00redoxin domain protein [Nannochloropsis gaditana][more]
gi|553185318|ref|XP_005854233.1|1.669e-12298.85redoxin domain protein [Nannochloropsis gaditana C... [more]
gi|1082697953|gb|OGA20086.1|5.508e-3742.86peroxiredoxin [Betaproteobacteria bacterium RIFCSP... [more]
gi|654921185|ref|WP_028371747.1|7.274e-3745.03peroxiredoxin [Burkholderia sp. UYPR1.413][more]
gi|1197215672|ref|WP_086466305.1|9.170e-3745.98peroxiredoxin [Oceanibaculum sp. L54-1-50][more]
gi|1095312760|emb|SEJ70619.1|1.039e-3645.03Peroxiredoxin [Paraburkholderia diazotrophica][more]
gi|1204999227|ref|WP_087735229.1|1.636e-3643.86peroxiredoxin [Paraburkholderia piptadeniae] >gi|1... [more]
gi|653236605|ref|WP_027442326.1|3.554e-3644.83peroxiredoxin [Porphyrobacter cryptus][more]
gi|1197797251|ref|WP_086735700.1|5.781e-3644.83peroxiredoxin [Porphyrobacter colymbi][more]
gi|983436962|ref|WP_060599653.1|6.454e-3644.44peroxiredoxin [Paraburkholderia caribensis] >gi|95... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1306rna1306Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications