EWM29371.1, cds1301 (CDS) Nannochloropsis gaditana

Overview
NameEWM29371.1
Unique Namecds1301
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:286096..287209 -
Alignment locationCM002457.1:285781..285939 -
Alignment locationCM002457.1:285551..285732 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29371.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100028g20.3307.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:286096..287209 -
CM002457.1supercontigCM002457.1:285781..285939 -
CM002457.1supercontigCM002457.1:285551..285732 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Homology
[Close]
BLAST of EWM29371.1 vs. NCBI_GenBank
Match: gi|585111899|gb|EWM29371.1| (hypothetical protein Naga_100028g20 [Nannochloropsis gaditana])

HSP 1 Score: 991.875 bits (2563), Expect = 0.000e+0
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 0 
Query:    1 MARHGYEYENPREARAREKEMRRQMTQMGMVPPPPTSEALGGKGKRETEGDAYEEYYSSEEREQVGWEVVRQMEKEEEKRCEHGLVKAQGTHRNDPYADYAQLKAAGNVEDTEAIIREARRVNREGLVGYGLGEDAVGRETASKFNVPSAGMGQEWSAFEAAAAQGIQDMGRYQDIGGGASSQKGSGSTLEAEEEMGIEEFMARLGYEYADPRVAKSQGEVESRPVDDPTSSSTESSFQSLAAPSTSVGNAFPRPQTIAPPAASPDASPSPFNTIQPLPPRADQSPPPWAHEIEALYDRVRANQAAARRRQGLPPLPGDADVMLPFIHPPGDQPLDPQGRPRQLTTEEVLSKLEMVRVNPDGSFTKVEAGQGVPTVTKLKPSRGGQQGRDTFSLRMAGDPAKEAKEKVDEDLVSRLARWSTEWATGGRDVAVYSGSKLGTSRRHSYHSVSNISDGGSDCCRNHQHPDSMGRHTREGLTWGSEDM 484
            MARHGYEYENPREARAREKEMRRQMTQMGMVPPPPTSEALGGKGKRETEGDAYEEYYSSEEREQVGWEVVRQMEKEEEKRCEHGLVKAQGTHRNDPYADYAQLKAAGNVEDTEAIIREARRVNREGLVGYGLGEDAVGRETASKFNVPSAGMGQEWSAFEAAAAQGIQDMGRYQDIGGGASSQKGSGSTLEAEEEMGIEEFMARLGYEYADPRVAKSQGEVESRPVDDPTSSSTESSFQSLAAPSTSVGNAFPRPQTIAPPAASPDASPSPFNTIQPLPPRADQSPPPWAHEIEALYDRVRANQAAARRRQGLPPLPGDADVMLPFIHPPGDQPLDPQGRPRQLTTEEVLSKLEMVRVNPDGSFTKVEAGQGVPTVTKLKPSRGGQQGRDTFSLRMAGDPAKEAKEKVDEDLVSRLARWSTEWATGGRDVAVYSGSKLGTSRRHSYHSVSNISDGGSDCCRNHQHPDSMGRHTREGLTWGSEDM
Sbjct:    1 MARHGYEYENPREARAREKEMRRQMTQMGMVPPPPTSEALGGKGKRETEGDAYEEYYSSEEREQVGWEVVRQMEKEEEKRCEHGLVKAQGTHRNDPYADYAQLKAAGNVEDTEAIIREARRVNREGLVGYGLGEDAVGRETASKFNVPSAGMGQEWSAFEAAAAQGIQDMGRYQDIGGGASSQKGSGSTLEAEEEMGIEEFMARLGYEYADPRVAKSQGEVESRPVDDPTSSSTESSFQSLAAPSTSVGNAFPRPQTIAPPAASPDASPSPFNTIQPLPPRADQSPPPWAHEIEALYDRVRANQAAARRRQGLPPLPGDADVMLPFIHPPGDQPLDPQGRPRQLTTEEVLSKLEMVRVNPDGSFTKVEAGQGVPTVTKLKPSRGGQQGRDTFSLRMAGDPAKEAKEKVDEDLVSRLARWSTEWATGGRDVAVYSGSKLGTSRRHSYHSVSNISDGGSDCCRNHQHPDSMGRHTREGLTWGSEDM 484
[Close]
BLAST of EWM29371.1 vs. NCBI_GenBank
Match: gi|585111897|gb|EWM29369.1| (glycine oxidase [Nannochloropsis gaditana])

HSP 1 Score: 160.614 bits (405), Expect = 2.760e-39
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0 
Query:   91 THRNDPYADYAQLKAAGNVEDTEAIIREARRVNREGLVGYGLGEDAVGRETASKFNVPSAGMGQEWSAFEAAAAQGIQDMGRY 173
            TH +DPY DYAQLKAAGNVEDTEAIIREARRVNREGLVGYGLGEDAVGRETASKFNVPSAGMGQEWSAFEAAA QG+ DMGR+
Sbjct:  511 THHDDPYVDYAQLKAAGNVEDTEAIIREARRVNREGLVGYGLGEDAVGRETASKFNVPSAGMGQEWSAFEAAAEQGVHDMGRF 593
The following BLAST results are available for this feature:
BLAST of EWM29371.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111899|gb|EWM29371.1|0.000e+0100.00hypothetical protein Naga_100028g20 [Nannochlorops... [more]
gi|585111897|gb|EWM29369.1|2.760e-3991.57glycine oxidase [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1303rna1303Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications