EWM29344.1, cds1298 (CDS) Nannochloropsis gaditana

Overview
NameEWM29344.1
Unique Namecds1298
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:279513..279561 -
Alignment locationCM002457.1:278074..278868 -
Alignment locationCM002457.1:277565..277926 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29344.1
ProductDnaJ subfamily C member 28
Orig transcript idgnl|cribi|Naga_100028g14.3280.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:279513..279561 -
CM002457.1supercontigCM002457.1:278074..278868 -
CM002457.1supercontigCM002457.1:277565..277926 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018961DnaJ_homolog_subfam-C_membr-28
Homology
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|585111872|gb|EWM29344.1| (DnaJ subfamily C member 28 [Nannochloropsis gaditana])

HSP 1 Score: 827.78 bits (2137), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MCLSKELIVCSRICSSTMRIRISPLGEQNLVARYITARHLTDAATHQPAALPSTQEKKGRNGDQNSSRRKRSRQTHASGVSGRQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGKLERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQEARQLYRCADREGLLGVTALMEHRLDYFSDDGSMYQGGGGSNITTYWQDQNGLGRGKSGRKRRDEASQHISDLMMIPIDSLSRALARLFSI 401
            MCLSKELIVCSRICSSTMRIRISPLGEQNLVARYITARHLTDAATHQPAALPSTQEKKGRNGDQNSSRRKRSRQTHASGVSGRQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGKLERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQEARQLYRCADREGLLGVTALMEHRLDYFSDDGSMYQGGGGSNITTYWQDQNGLGRGKSGRKRRDEASQHISDLMMIPIDSLSRALARLFSI
Sbjct:    1 MCLSKELIVCSRICSSTMRIRISPLGEQNLVARYITARHLTDAATHQPAALPSTQEKKGRNGDQNSSRRKRSRQTHASGVSGRQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGKLERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQEARQLYRCADREGLLGVTALMEHRLDYFSDDGSMYQGGGGSNITTYWQDQNGLGRGKSGRKRRDEASQHISDLMMIPIDSLSRALARLFSI 401          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|553191913|ref|XP_005855483.1| (hypothetical protein NGA_0131300 [Nannochloropsis gaditana CCMP526] >gi|422293585|gb|EKU20885.1| hypothetical protein NGA_0131300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 440.654 bits (1132), Expect = 2.369e-153
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:  191 MDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQEARQLYRCADREGLLGVTALMEHRLDYFSDDGSMYQGGGGSNITTYWQDQNGLGRGKSGRKRRDEASQHISDLMMIPIDSLSRALARLFSI 401
            MDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQEARQLYRCADREGLLGVTALMEHRLDYFSDDGSMYQGGGGSNITTYWQDQNGLGRGKSGRKRRDEASQHISDLMMIPIDSLSRALARLFSI
Sbjct:    1 MDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQEARQLYRCADREGLLGVTALMEHRLDYFSDDGSMYQGGGGSNITTYWQDQNGLGRGKSGRKRRDEASQHISDLMMIPIDSLSRALARLFSI 211          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|553184029|ref|XP_005854013.1| (hypothetical protein NGA_0426510 [Nannochloropsis gaditana CCMP526] >gi|422295051|gb|EKU22350.1| hypothetical protein NGA_0426510 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 114.005 bits (284), Expect = 2.679e-24
Identity = 71/197 (36.04%), Postives = 113/197 (57.36%), Query Frame = 0
Query:  153 VEERIQLSMIRGEFANLKRRGKLERERTPGL----DRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESA---ARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPL--IAEAALQRPSSYQE---ARQLYRCADREGLLG-VTALMEHRLD 336
            VEE+IQL+M +G+F +LK +GK   ER  G     D+T+  +MDVL ++GV P W++R  R++   R L  RL  E+A+  ++     E A    ++    R      + +RV G+  + ED A IN+EI  YNLQVP++ LQR+++ L+ +  + +   +   ++ E   AR + R A++EG+   VTAL   RLD
Sbjct:  108 VEEKIQLAMAQGDFDDLKGKGK-PLERLEGYLYATDKTSATYMDVLSKSGVKPVWVERSSRIRDAERRLVHRLEAEWAKVVLETWEHGEGAEKRGKEGAMAR------WKSRVVGLAGLREDVAWINAEIDLYNLQVPSMSLQRMRMTLEEVCDVVQGGEKEGGTWMERGTARAVVRAAEKEGVFSTVTALGSLRLD 297          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|585109651|gb|EWM27416.1| (DnaJ subfamily C, member 28 [Nannochloropsis gaditana])

HSP 1 Score: 99.3673 bits (246), Expect = 7.085e-19
Identity = 56/147 (38.10%), Postives = 88/147 (59.86%), Query Frame = 0
Query:  153 VEERIQLSMIRGEFANLKRRGKLERERTPGL----DRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQ 295
            VEE+IQL+M +G+F +LK +GK   ER  G     D+T+  +MDVL ++GV P W++R  R++   R L  RL  E+A+  ++     E A +     +      + +RV G+  + ED A IN+EI  YNLQVP++ LQR+++ L+
Sbjct:  108 VEEKIQLAMAQGDFDDLKGKGK-PLERLEGYLYATDKTSATYMDVLSKSGVKPVWVERSSRIRDAERRLVHRLEAEWAKVVLETWEHGEGAEKR---GKEGAMARWKSRVVGLAGLREDVAWINAEIDLYNLQVPSMSLQRMRMTLE 250          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|1133415999|ref|XP_019880870.1| (PREDICTED: dnaJ homolog subfamily C member 28 [Aethina tumida] >gi|1133416001|ref|XP_019880871.1| PREDICTED: dnaJ homolog subfamily C member 28 [Aethina tumida])

HSP 1 Score: 88.1965 bits (217), Expect = 1.036e-15
Identity = 69/232 (29.74%), Postives = 116/232 (50.00%), Query Frame = 0
Query:   83 RQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGKL---ERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRPSSYQE 311
            RQ+L++ G+ +GT F RE+   K R M+  E V +H   ++ + ++ L ++    +++I+   + G   LVE+ IQ SM +GEF+NL   GK    E  R P +D  T    +VL  NG  PEWI  QK ++S    L+  L   Y R      P           + T     +S  V+  + + ++   IN +I  +NL VP L  Q +++ L+   A+ A++   S+++
Sbjct:  110 RQYLSYGGIGSGTPFQREKQYTKVRAMQAAENVYQHRVAKVTAEENTLMDKAP-LKHKIK--TKYGFDRLVEDLIQESMSKGEFSNLSGAGKPLRNEHNRNPYVDFVTHKLNEVLIDNGFTPEWITLQKEIRSEAHHLRTILF--YERQFFSPFP-----------LNTDENIIWSEIVYKYKQMVDE---INKKIAKFNLVVPVLDKQMIQISLEKE-AQKAIKDGKSFKD 321          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|332376817|gb|AEE63548.1| (unknown [Dendroctonus ponderosae])

HSP 1 Score: 85.1149 bits (209), Expect = 1.231e-14
Identity = 64/216 (29.63%), Postives = 109/216 (50.46%), Query Frame = 0
Query:   83 RQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGKL---ERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQ 295
            RQ+L++ GV +G  + RE+   K R M+  E +  H   ++ + +  L ++    +++I+   + G   LVE+ IQ SM RGEF+NLK  GK     + R P +D TT    +VL  NG  PEWI  QK ++     L++ L  E  R    + P   S   ++          +S +V+  + + +    +N +I  +NL VP L+ Q +++ L+
Sbjct:  117 RQYLSYGGVGSGNPYQREKQYTKMRAMQASENLYNHRMGKVSAGEHALMDKM-PLKHKIKT--KYGFDRLVEDLIQESMSRGEFSNLKNSGKPLPDHQNRNPYVDFTTHKLNEVLIENGFTPEWILLQKEIREEATSLRKSLFSE--RQYFGSYP--LSVEDNI---------EWSEKVYNYKQVVDQ---LNKKIAKFNLVVPVLNKQMIQISLE 313          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|1130209322|ref|XP_019754168.1| (PREDICTED: dnaJ homolog subfamily C member 28 [Dendroctonus ponderosae] >gi|478261323|gb|ENN80739.1| hypothetical protein YQE_02847, partial [Dendroctonus ponderosae] >gi|546680358|gb|ERL90637.1| hypothetical protein D910_07984 [Dendroctonus ponderosae])

HSP 1 Score: 85.1149 bits (209), Expect = 1.327e-14
Identity = 64/216 (29.63%), Postives = 109/216 (50.46%), Query Frame = 0
Query:   83 RQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGKL---ERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQ 295
            RQ+L++ GV +G  + RE+   K R M+  E +  H   ++ + +  L ++    +++I+   + G   LVE+ IQ SM RGEF+NLK  GK     + R P +D TT    +VL  NG  PEWI  QK ++     L++ L  E  R    + P   S   ++          +S +V+  + + +    +N +I  +NL VP L+ Q +++ L+
Sbjct:  117 RQYLSYGGVGSGNPYQREKQYTKMRAMQASENLYNHRMGKVSAGEHALMDKM-PLKHKIKT--KYGFDRLVEDLIQESMSRGEFSNLKNSGKPLPDHQNRNPYVDFTTHKLNEVLIENGFTPEWILLQKEIREEATSLRKSLFSE--RQYFGSYP--LSVEDNI---------EWSEKVYNYKQVVDQ---LNKKIAKFNLVVPVLNKQMIQISLE 313          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|768424088|ref|XP_011552982.1| (PREDICTED: dnaJ homolog subfamily C member 28-like [Plutella xylostella])

HSP 1 Score: 84.7297 bits (208), Expect = 1.635e-14
Identity = 74/247 (29.96%), Postives = 116/247 (46.96%), Query Frame = 0
Query:   83 RQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKH-LAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGK--LERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQR--PSSYQEARQLYRCADREGL 324
            RQ+L+  GV  GT   R+    K R  +  + V +H +AK + S + +++++      + +   + G   LVE+ IQ S+ +GEF NL  +GK   ++ R P +D TT    +VL  NG +PEWI   K +      L++ L  +  R  +   P  E           P +   S    G   IAE    IN +I  YNL VP L+ QRL + L+  I +  LQ    S YQ+  + ++    E +
Sbjct:  112 RQYLSFEGVGHGTPSQRQRQWEKARAQQAADNVMEHRVAKSMASENTLMKKEKNYFAKKHDIKTKYGFDRLVEDLIQESISKGEFENLSGKGKPLKDQNRNPYVDFTTHKINEVLINNGFVPEWITMNKEIAQEIEALKQELQKD--RMFLGPYPLSEEEG--------PKWAKLS---QGYEGIAES---INKKINHYNLIVPLLNKQRLHIQLKE-ICDDVLQNGIHSVYQKEDETHKELQYEAV 341          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|768438516|ref|XP_011560844.1| (PREDICTED: dnaJ homolog subfamily C member 28-like [Plutella xylostella])

HSP 1 Score: 83.5741 bits (205), Expect = 4.843e-14
Identity = 72/247 (29.15%), Postives = 115/247 (46.56%), Query Frame = 0
Query:   83 RQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKH-LAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGK--LERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVEYARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQR--PSSYQEARQLYRCADREGL 324
            RQ+L+  GV  GT   R+    K R  +  + V +H +AK + S + +++++      + +   + G   LVE+ IQ S+ +GEF NL  +GK   ++ R P +D TT    +VL  NG +PEWI   K +      L++ L  +  R  +   P  E                ++    G   IAE    IN +I  YNL VP L+ QRL + L+  I +  LQ    S YQ+  + ++    E +
Sbjct:  112 RQYLSFEGVGHGTPSQRQRQWEKARAQQAADNVMEHRVAKSMASENTLMKKEKNYFAKKHDIKTKYGFDRLVEDLIQESISKGEFENLSGKGKPLKDQNRNPYVDFTTHKINEVLINNGFVPEWITMNKEIAQEIEALKQELQKD--RMFLGPYPLSEEEGH-----------KWAKLSQGYEGIAES---INKKINHYNLIVPLLNKQRLHIQLKE-ICDDVLQNGIHSVYQKEDETHKELQYEAV 341          
BLAST of EWM29344.1 vs. NCBI_GenBank
Match: gi|1060154446|ref|XP_017854059.1| (PREDICTED: dnaJ homolog subfamily C member 28-like [Drosophila busckii])

HSP 1 Score: 83.1889 bits (204), Expect = 6.257e-14
Identity = 67/229 (29.26%), Postives = 111/229 (48.47%), Query Frame = 0
Query:   83 RQFLTHPGVPAGTMFAREEMAMKKRMMETKEGVQKHLAKRLGSADDVLEEQGEDAQNRIERGRRTGVASLVEERIQLSMIRGEFANLKRRGK---LERERTPGLDRTTDIFMDVLKRNGVLPEWIQRQKRVQSMTRLLQRRLHVE--YARACMDANPELESAARDVPFVRTPTYEAFSARVHGVRSIAEDCAVINSEILTYNLQVPALHLQRLKLDLQPLIAEAALQRP 306
            RQ+L++ G+  GT F R++   + R M+ +E V +H  ++  + +  L  +G +   +     + GV  +VE+ IQ +M +G+F NLK  GK   L + + P LD TT     ++  NG  PEWI   K ++     L+++L  E  Y        PE ++A           ++ F A++H      ++   +N  I  YNL VP L  Q  +L L  L AE+  + P
Sbjct:  116 RQYLSNEGIGIGTPFQRQKQYQQVRAMKAQERVLEHRIEKAAAGEHALMRKGGNYYGKHAIKTKYGVDRVVEDLIQEAMSKGDFNNLKGTGKPLSLAQTQNPYLDFTTHKLNKIMLDNGFTPEWIMLSKDIRESAHKLKQQLRQERSYYGEWPLTQPEQQAA-----------WQKF-AQLH-----VDEVQQLNKLIDKYNLIVPILENQFFRLQLDKL-AESVFKEP 326          
The following BLAST results are available for this feature:
BLAST of EWM29344.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111872|gb|EWM29344.1|0.000e+0100.00DnaJ subfamily C member 28 [Nannochloropsis gadita... [more]
gi|553191913|ref|XP_005855483.1|2.369e-153100.00hypothetical protein NGA_0131300 [Nannochloropsis ... [more]
gi|553184029|ref|XP_005854013.1|2.679e-2436.04hypothetical protein NGA_0426510 [Nannochloropsis ... [more]
gi|585109651|gb|EWM27416.1|7.085e-1938.10DnaJ subfamily C, member 28 [Nannochloropsis gadit... [more]
gi|1133415999|ref|XP_019880870.1|1.036e-1529.74PREDICTED: dnaJ homolog subfamily C member 28 [Aet... [more]
gi|332376817|gb|AEE63548.1|1.231e-1429.63unknown [Dendroctonus ponderosae][more]
gi|1130209322|ref|XP_019754168.1|1.327e-1429.63PREDICTED: dnaJ homolog subfamily C member 28 [Den... [more]
gi|768424088|ref|XP_011552982.1|1.635e-1429.96PREDICTED: dnaJ homolog subfamily C member 28-like... [more]
gi|768438516|ref|XP_011560844.1|4.843e-1429.15PREDICTED: dnaJ homolog subfamily C member 28-like... [more]
gi|1060154446|ref|XP_017854059.1|6.257e-1429.26PREDICTED: dnaJ homolog subfamily C member 28-like... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1300rna1300Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications