EWM29382.1, cds1290 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|585111910|gb|EWM29382.1| (peroxisomal membrane protein 2 [Nannochloropsis gaditana]) HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query: 1 MTTHTRRDAHLLRMAAVLLLLFGGSQAFFTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259
MTTHTRRDAHLLRMAAVLLLLFGGSQAFFTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES
Sbjct: 1 MTTHTRRDAHLLRMAAVLLLLFGGSQAFFTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|553179917|ref|XP_005852786.1| (peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526] >gi|553191898|ref|XP_005855479.1| peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526] >gi|422293581|gb|EKU20881.1| peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526] >gi|422295747|gb|EKU23046.1| peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 376.326 bits (965), Expect = 9.145e-131 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 80 MIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259
MIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES
Sbjct: 1 MIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 180
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|1210531133|dbj|GAX10234.1| (peroxisomal membrane protein 2 [Fistulifera solaris]) HSP 1 Score: 182.57 bits (462), Expect = 1.170e-53 Identity = 97/244 (39.75%), Postives = 140/244 (57.38%), Query Frame = 0
Query: 11 LLRMAAVLLL---LFGGSQAFFTPARQSLRPVIRRSSRSRGALSA--VDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGE 249
+LR+ ++ L LF S F T RQ P+ ++ + R S + + + Y + T PL+TK T+++I+ DL+ QA+E N + IDW R RF FG LQ WNH+Y+ D ++PP DP + TN +KV +DQG+QAP+FT++IF +L LEGK LE + Q+++D+ + TNW V+IP T N FVPP RVLF+NV F GW ++LSLL+NK E
Sbjct: 1 MLRLHSLFLFAPFLFSVSHGFHTIHRQ---PISFQNVKHRYPFSPLYIGPEEAWAAYNTALQTDPLVTKSITASVILGAADLTGQALE-----------NRSKVSSTIDWARSARFAFFGLVLQAPWNHFYYLLLDGVLPPTEDPFTATNFVKVVIDQGLQAPLFTILIFVFLGALEGKQLEAIQQQLQKDYKNTMLTNWKVFIPATVINIGFVPPIFRVLFLNVVFFGWSIYLSLLLNKDKSE 230
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|1210518815|dbj|GAX22361.1| (peroxisomal membrane protein 2 [Fistulifera solaris]) HSP 1 Score: 175.637 bits (444), Expect = 1.316e-51 Identity = 84/189 (44.44%), Postives = 116/189 (61.38%), Query Frame = 0
Query: 61 GYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGE 249
Y + T PLITK T+++I+ DL+ QA+E N + IDW R RF FG LQ WNH+Y+ D ++PP DP + TN LKV +DQG+QAP+FT++IF +L LEGK LE + Q+++D+ + NW V+IP T N FVPP RVLF+N+ F GW ++LSLL+NK + E
Sbjct: 9 AYNTALQTDPLITKSITASVILGAADLTGQALE-----------NRSKISSSIDWARSARFAFFGLVLQAPWNHFYYLLLDGVLPPTEDPFTATNFLKVVIDQGLQAPLFTILIFVFLGALEGKQLEAIQQQLQKDYKNTMLANWKVFIPATAINIGFVPPIFRVLFLNLVFFGWSIYLSLLLNKDESE 186
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|873236827|emb|CEL98403.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 176.022 bits (445), Expect = 1.344e-51 Identity = 87/198 (43.94%), Postives = 124/198 (62.63%), Query Frame = 0
Query: 57 DLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQT 254
DL+ GY+ + PL+TKC TS +I+P D++AQ IE K D GID+ R R+L G L WNHY++ + D +PPP++P+S N L++ALDQ +QAP+FT + FA L LLEG N + + ++ RD+W + TNW VW+P + N AFVP L++L+VNV F W +FLS++ N +D EP QT
Sbjct: 15 DLWGGYLSSLDAQPLLTKCLTSGVILPAADIAAQLIE---------KRGDPSAPRGIDFTRTSRWLAAGFLLHAPWNHYWYNFLDARVPPPTEPLSGINFLRLALDQFLQAPVFTALFFAVLQLLEGANTQGVRDKLSRDWWSTMKTNWVVWLPASFINLAFVPTALKLLYVNVVFYFWSIFLSIVAN-RDVEPQKQT 202
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|223997328|ref|XP_002288337.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975445|gb|EED93773.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 172.555 bits (436), Expect = 3.063e-50 Identity = 87/196 (44.39%), Postives = 120/196 (61.22%), Query Frame = 0
Query: 56 NDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEE----DLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKD 247
+++ Y+ + + PL+ K T+ +I+ DLS QAI+ Q+ AK N ++ D G+D R LRF FG LQ WNH+Y+ D +PP DP + T +KV +DQ IQAPIFTV+IFA+L LEGK +EE K Q+ D+ + NW +W+P T N AF PP LRVLF+NV F W +FLSL +NK +
Sbjct: 3 EEVWTSYLNALESDPLLVKSVTAGVILGAADLSGQAIQ-----QSLAKANSDDATTITDSGVDIARFLRFAFFGFILQAPWNHFYYLLLDGALPPTPDPFTATTGIKVLVDQFIQAPIFTVIIFAFLGFLEGKTVEEIKKQLDDDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNKTE 193
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|219109527|ref|XP_002176518.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411053|gb|EEC50981.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 166.392 bits (420), Expect = 2.478e-47 Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 0
Query: 29 FTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKD 247
FTP+ + + + R S + S + + + Y G + +PLI K T+ +I+ DL+ Q +E ++ KQ G + E+ GIDW R RF IFG LQ WNH+Y+ D IPP ++P + TN +KV +DQ +QAPIFTV+IF +L LEGK K Q+ D+ I NW +W+P T N FVPP RVL++N F W ++LSL +NKKD
Sbjct: 19 FTPSSPTRQRIGRASKSTSFTGSNLGPAEAWSAYNGALEANPLIVKSVTAGIILGAADLAGQTLEDFQKKQEG-DAQEALEEFGIDWLRSARFAIFGLVLQAPWNHFYYLALDGQIPPTTEPFTTTNGIKVLIDQFVQAPIFTVLIFVFLGTLEGKTPSAIKNQLNNDYKDTILANWKLWLPATVINIGFVPPLFRVLYLNGVFFFWSIYLSLKLNKKD 236
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|1072224098|gb|OEU08850.1| (hypothetical protein FRACYDRAFT_143441, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 160.614 bits (405), Expect = 7.366e-46 Identity = 84/185 (45.41%), Postives = 114/185 (61.62%), Query Frame = 0
Query: 61 GYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNK 245
Y + T PL+TK T+ +I+ DL+ QA++ K +G DE E ID R RF FG LQ WNH+Y+Q D IPP ++P + T +K A+DQ +QAPIFTV+IFA+L LEGK++E K Q+ D+ + NW +W+P T N AFVPP LRVL++N F W +FLSL +NK
Sbjct: 3 AYNDALITSPLLTKSVTAGIILGAADLAGQAVQD---KISG----DETE---IDIARTARFAFFGLVLQAPWNHFYYQLLDGSIPPTAEPWTSTTAIKTAIDQFVQAPIFTVIIFAFLGFLEGKSVEAIKNQLDEDYKDTMVANWKLWVPATVINIAFVPPILRVLYLNCVFFFWSIFLSLKLNK 177
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|922863620|gb|KOO31022.1| (mob kinase activator 1a [Chrysochromulina sp. CCMP291]) HSP 1 Score: 165.236 bits (417), Expect = 2.831e-45 Identity = 84/210 (40.00%), Postives = 124/210 (59.05%), Query Frame = 0
Query: 40 IRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGE 249
+R S+S AL+ V +++Q Y+GL+ + PL+TK T+ +I+ GD +AQ + + ++ D D R LR+ +FG LQ WNH ++ D +PP DP +LT + KV +DQGIQAPIFT++I + ++EGK Q+K D + NW V++P T N F PP+LRVLF+NV F GW V+LS +N K+GE
Sbjct: 171 LRYRSQSVVALAGV--AEVWQDYLGLLESAPLVTKSITAGVIIGAGDSAAQLL-----------ASRDKIDAEFDVARALRWALFGLVLQGPWNHAFYLLLDGALPPTPDPFTLTTLTKVGIDQGIQAPIFTIIILYFFAVVEGKGFGYATNQVKNDLGGILIKNWSVFLPATVINIGFCPPELRVLFLNVVFFGWVVYLSAFLNAKEGE 367
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|298707933|emb|CBJ30319.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 159.844 bits (403), Expect = 3.247e-45 Identity = 85/204 (41.67%), Postives = 118/204 (57.84%), Query Frame = 0
Query: 52 AVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWK--RVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQ 253
A +L+ Y+ + T PL+TK T+ I P D AQ + KG D+ E L W R LR+L FG +Q WNH+++ D +PP DP+S T +KV +DQ +QAPIFTVVIF L LLEGK + + + Q+ +D+ + NW V++P N AF PP+LRVLF+NV F GW +FLS +V+K GE +
Sbjct: 2 AAAPTELWDSYLHALETAPLLTKSITAGCIFPAADSVAQWFDN--------KGQDDGE-LQQQWDIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLNQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEE 196 The following BLAST results are available for this feature:
BLAST of EWM29382.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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