EWM29382.1, cds1290 (CDS) Nannochloropsis gaditana

Overview
NameEWM29382.1
Unique Namecds1290
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:261219..261998 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29382.1
Productperoxisomal membrane protein 2
Orig transcript idgnl|cribi|Naga_100028g6.3318.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:261219..261998 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|585111910|gb|EWM29382.1| (peroxisomal membrane protein 2 [Nannochloropsis gaditana])

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MTTHTRRDAHLLRMAAVLLLLFGGSQAFFTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259
            MTTHTRRDAHLLRMAAVLLLLFGGSQAFFTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES
Sbjct:    1 MTTHTRRDAHLLRMAAVLLLLFGGSQAFFTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|553179917|ref|XP_005852786.1| (peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526] >gi|553191898|ref|XP_005855479.1| peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526] >gi|422293581|gb|EKU20881.1| peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526] >gi|422295747|gb|EKU23046.1| peroxisomal membrane protein 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 376.326 bits (965), Expect = 9.145e-131
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0
Query:   80 MIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 259
            MIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES
Sbjct:    1 MIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQTRPSES 180          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|1210531133|dbj|GAX10234.1| (peroxisomal membrane protein 2 [Fistulifera solaris])

HSP 1 Score: 182.57 bits (462), Expect = 1.170e-53
Identity = 97/244 (39.75%), Postives = 140/244 (57.38%), Query Frame = 0
Query:   11 LLRMAAVLLL---LFGGSQAFFTPARQSLRPVIRRSSRSRGALSA--VDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGE 249
            +LR+ ++ L    LF  S  F T  RQ   P+  ++ + R   S   +   + +  Y   + T PL+TK  T+++I+   DL+ QA+E           N  +    IDW R  RF  FG  LQ  WNH+Y+   D ++PP  DP + TN +KV +DQG+QAP+FT++IF +L  LEGK LE  + Q+++D+   + TNW V+IP T  N  FVPP  RVLF+NV F GW ++LSLL+NK   E
Sbjct:    1 MLRLHSLFLFAPFLFSVSHGFHTIHRQ---PISFQNVKHRYPFSPLYIGPEEAWAAYNTALQTDPLVTKSITASVILGAADLTGQALE-----------NRSKVSSTIDWARSARFAFFGLVLQAPWNHFYYLLLDGVLPPTEDPFTATNFVKVVIDQGLQAPLFTILIFVFLGALEGKQLEAIQQQLQKDYKNTMLTNWKVFIPATVINIGFVPPIFRVLFLNVVFFGWSIYLSLLLNKDKSE 230          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|1210518815|dbj|GAX22361.1| (peroxisomal membrane protein 2 [Fistulifera solaris])

HSP 1 Score: 175.637 bits (444), Expect = 1.316e-51
Identity = 84/189 (44.44%), Postives = 116/189 (61.38%), Query Frame = 0
Query:   61 GYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGE 249
             Y   + T PLITK  T+++I+   DL+ QA+E           N  +    IDW R  RF  FG  LQ  WNH+Y+   D ++PP  DP + TN LKV +DQG+QAP+FT++IF +L  LEGK LE  + Q+++D+   +  NW V+IP T  N  FVPP  RVLF+N+ F GW ++LSLL+NK + E
Sbjct:    9 AYNTALQTDPLITKSITASVILGAADLTGQALE-----------NRSKISSSIDWARSARFAFFGLVLQAPWNHFYYLLLDGVLPPTEDPFTATNFLKVVIDQGLQAPLFTILIFVFLGALEGKQLEAIQQQLQKDYKNTMLANWKVFIPATAINIGFVPPIFRVLFLNLVFFGWSIYLSLLLNKDESE 186          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|873236827|emb|CEL98403.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 176.022 bits (445), Expect = 1.344e-51
Identity = 87/198 (43.94%), Postives = 124/198 (62.63%), Query Frame = 0
Query:   57 DLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQT 254
            DL+ GY+  +   PL+TKC TS +I+P  D++AQ IE         K  D     GID+ R  R+L  G  L   WNHY++ + D  +PPP++P+S  N L++ALDQ +QAP+FT + FA L LLEG N +  + ++ RD+W  + TNW VW+P +  N AFVP  L++L+VNV F  W +FLS++ N +D EP  QT
Sbjct:   15 DLWGGYLSSLDAQPLLTKCLTSGVILPAADIAAQLIE---------KRGDPSAPRGIDFTRTSRWLAAGFLLHAPWNHYWYNFLDARVPPPTEPLSGINFLRLALDQFLQAPVFTALFFAVLQLLEGANTQGVRDKLSRDWWSTMKTNWVVWLPASFINLAFVPTALKLLYVNVVFYFWSIFLSIVAN-RDVEPQKQT 202          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|223997328|ref|XP_002288337.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975445|gb|EED93773.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 172.555 bits (436), Expect = 3.063e-50
Identity = 87/196 (44.39%), Postives = 120/196 (61.22%), Query Frame = 0
Query:   56 NDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEE----DLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKD 247
             +++  Y+  + + PL+ K  T+ +I+   DLS QAI+     Q+ AK N ++     D G+D  R LRF  FG  LQ  WNH+Y+   D  +PP  DP + T  +KV +DQ IQAPIFTV+IFA+L  LEGK +EE K Q+  D+   +  NW +W+P T  N AF PP LRVLF+NV F  W +FLSL +NK +
Sbjct:    3 EEVWTSYLNALESDPLLVKSVTAGVILGAADLSGQAIQ-----QSLAKANSDDATTITDSGVDIARFLRFAFFGFILQAPWNHFYYLLLDGALPPTPDPFTATTGIKVLVDQFIQAPIFTVIIFAFLGFLEGKTVEEIKKQLDDDYVDTMLANWKLWVPATAVNIAFCPPILRVLFLNVVFFFWSIFLSLKLNKTE 193          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|219109527|ref|XP_002176518.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411053|gb|EEC50981.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 166.392 bits (420), Expect = 2.478e-47
Identity = 90/219 (41.10%), Postives = 128/219 (58.45%), Query Frame = 0
Query:   29 FTPARQSLRPVIRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKD 247
            FTP+  + + + R S  +    S +   + +  Y G +  +PLI K  T+ +I+   DL+ Q +E ++ KQ G    +  E+ GIDW R  RF IFG  LQ  WNH+Y+   D  IPP ++P + TN +KV +DQ +QAPIFTV+IF +L  LEGK     K Q+  D+   I  NW +W+P T  N  FVPP  RVL++N  F  W ++LSL +NKKD
Sbjct:   19 FTPSSPTRQRIGRASKSTSFTGSNLGPAEAWSAYNGALEANPLIVKSVTAGIILGAADLAGQTLEDFQKKQEG-DAQEALEEFGIDWLRSARFAIFGLVLQAPWNHFYYLALDGQIPPTTEPFTTTNGIKVLIDQFVQAPIFTVLIFVFLGTLEGKTPSAIKNQLNNDYKDTILANWKLWLPATVINIGFVPPLFRVLYLNGVFFFWSIYLSLKLNKKD 236          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|1072224098|gb|OEU08850.1| (hypothetical protein FRACYDRAFT_143441, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 160.614 bits (405), Expect = 7.366e-46
Identity = 84/185 (45.41%), Postives = 114/185 (61.62%), Query Frame = 0
Query:   61 GYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNK 245
             Y   + T PL+TK  T+ +I+   DL+ QA++    K +G    DE E   ID  R  RF  FG  LQ  WNH+Y+Q  D  IPP ++P + T  +K A+DQ +QAPIFTV+IFA+L  LEGK++E  K Q+  D+   +  NW +W+P T  N AFVPP LRVL++N  F  W +FLSL +NK
Sbjct:    3 AYNDALITSPLLTKSVTAGIILGAADLAGQAVQD---KISG----DETE---IDIARTARFAFFGLVLQAPWNHFYYQLLDGSIPPTAEPWTSTTAIKTAIDQFVQAPIFTVIIFAFLGFLEGKSVEAIKNQLDEDYKDTMVANWKLWVPATVINIAFVPPILRVLYLNCVFFFWSIFLSLKLNK 177          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|922863620|gb|KOO31022.1| (mob kinase activator 1a [Chrysochromulina sp. CCMP291])

HSP 1 Score: 165.236 bits (417), Expect = 2.831e-45
Identity = 84/210 (40.00%), Postives = 124/210 (59.05%), Query Frame = 0
Query:   40 IRRSSRSRGALSAVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWKRVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGE 249
            +R  S+S  AL+ V   +++Q Y+GL+ + PL+TK  T+ +I+  GD +AQ +            + ++ D   D  R LR+ +FG  LQ  WNH ++   D  +PP  DP +LT + KV +DQGIQAPIFT++I  +  ++EGK       Q+K D    +  NW V++P T  N  F PP+LRVLF+NV F GW V+LS  +N K+GE
Sbjct:  171 LRYRSQSVVALAGV--AEVWQDYLGLLESAPLVTKSITAGVIIGAGDSAAQLL-----------ASRDKIDAEFDVARALRWALFGLVLQGPWNHAFYLLLDGALPPTPDPFTLTTLTKVGIDQGIQAPIFTIIILYFFAVVEGKGFGYATNQVKNDLGGILIKNWSVFLPATVINIGFCPPELRVLFLNVVFFGWVVYLSAFLNAKEGE 367          
BLAST of EWM29382.1 vs. NCBI_GenBank
Match: gi|298707933|emb|CBJ30319.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 159.844 bits (403), Expect = 3.247e-45
Identity = 85/204 (41.67%), Postives = 118/204 (57.84%), Query Frame = 0
Query:   52 AVDANDLFQGYMGLIHTHPLITKCATSAMIVPLGDLSAQAIETYKAKQTGAKGNDEEEDLGIDWK--RVLRFLIFGATLQPIWNHYYFQWFDHLIPPPSDPISLTNVLKVALDQGIQAPIFTVVIFAYLDLLEGKNLEETKAQIKRDFWPCITTNWWVWIPITCANYAFVPPDLRVLFVNVAFLGWCVFLSLLVNKKDGEPTSQ 253
            A    +L+  Y+  + T PL+TK  T+  I P  D  AQ  +         KG D+ E L   W   R LR+L FG  +Q  WNH+++   D  +PP  DP+S T  +KV +DQ +QAPIFTVVIF  L LLEGK + + + Q+ +D+   +  NW V++P    N AF PP+LRVLF+NV F GW +FLS +V+K  GE   +
Sbjct:    2 AAAPTELWDSYLHALETAPLLTKSITAGCIFPAADSVAQWFDN--------KGQDDGE-LQQQWDIARTLRWLFFGFAVQAPWNHFFYVLLDGALPPTPDPLSTTTAVKVLIDQFVQAPIFTVVIFGVLGLLEGKAVADIREQLNQDYKSTMLANWGVFVPAAVVNLAFCPPELRVLFLNVVFFGWTIFLSTVVSKGPGEAVEE 196          
The following BLAST results are available for this feature:
BLAST of EWM29382.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111910|gb|EWM29382.1|0.000e+0100.00peroxisomal membrane protein 2 [Nannochloropsis ga... [more]
gi|553179917|ref|XP_005852786.1|9.145e-131100.00peroxisomal membrane protein 2 [Nannochloropsis ga... [more]
gi|1210531133|dbj|GAX10234.1|1.170e-5339.75peroxisomal membrane protein 2 [Fistulifera solari... [more]
gi|1210518815|dbj|GAX22361.1|1.316e-5144.44peroxisomal membrane protein 2 [Fistulifera solari... [more]
gi|873236827|emb|CEL98403.1|1.344e-5143.94unnamed protein product [Vitrella brassicaformis C... [more]
gi|223997328|ref|XP_002288337.1|3.063e-5044.39predicted protein, partial [Thalassiosira pseudona... [more]
gi|219109527|ref|XP_002176518.1|2.478e-4741.10predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072224098|gb|OEU08850.1|7.366e-4645.41hypothetical protein FRACYDRAFT_143441, partial [F... [more]
gi|922863620|gb|KOO31022.1|2.831e-4540.00mob kinase activator 1a [Chrysochromulina sp. CCMP... [more]
gi|298707933|emb|CBJ30319.1|3.247e-4541.67conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1292rna1292Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications