EWM29413.1, cds1266 (CDS) Nannochloropsis gaditana

Overview
NameEWM29413.1
Unique Namecds1266
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:196321..196986 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29413.1
ProductAnaphase-promoting complex, subunit 10/DOC domain protein
Orig transcript idgnl|cribi|Naga_100042g23.5660.mrna
GeneAPC10
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:196321..196986 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like
IPR004939APC_su10/DOC_dom
Homology
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|585111942|gb|EWM29413.1| (Anaphase-promoting complex, subunit 10/DOC domain protein [Nannochloropsis gaditana])

HSP 1 Score: 460.685 bits (1184), Expect = 3.590e-164
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MAPVGTETSSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
            MAPVGTETSSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR
Sbjct:    1 MAPVGTETSSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|1173958570|gb|OQS04911.1| (anaphase-promoting complex subunit 10 [Thraustotheca clavata])

HSP 1 Score: 225.328 bits (573), Expect = 6.658e-72
Identity = 109/201 (54.23%), Postives = 140/201 (69.65%), Query Frame = 0
Query:   22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGT-MPEFTSAELAQFSTVR 221
            ELR++G EAVWSLSTAKPGNGV Q+RDD++DTYWQSDG QPHLIN+QF KKMT+ E+++YLD+ LDESYTP+KISI+AG+TFHDLVEI+T  + EP GW+ + +  P    PS +   G           LR FFLQI+++ MHQNGRDTH+RQVKV+ PR S                  +G  +PE +S E + F+T+R
Sbjct:    2 ELREVGDEAVWSLSTAKPGNGVYQLRDDNLDTYWQSDGVQPHLINIQFAKKMTVQEIAMYLDHKLDESYTPRKISIRAGSTFHDLVEIKTQTIVEPMGWITIQLMQP----PSHIANAGSEKP-------LRTFFLQIAVMGMHQNGRDTHIRQVKVFAPRQSH----------------LFGADIPEPSSIEFSSFATIR 175          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|1173929805|gb|OQR82974.1| (anaphase-promoting complex subunit 10 [Achlya hypogyna])

HSP 1 Score: 223.016 bits (567), Expect = 5.925e-71
Identity = 111/200 (55.50%), Postives = 139/200 (69.50%), Query Frame = 0
Query:   22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
            E R+IG EAVWSLSTAKPGNGV Q+RDD +DTYWQSDG QPHLIN+QF KKMT+ EV+LYLDY LDESYTP+KISI+AGTT+HDL EI+T  + EP GW+ + + +P          + D+    P    LR FFLQI+++ MHQNGRDTH+RQVKVY PR       +H  +E          +PE +S E + F+T+R
Sbjct:    2 EKREIGDEAVWSLSTAKPGNGVHQLRDDSIDTYWQSDGVQPHLINIQFPKKMTVQEVALYLDYKLDESYTPRKISIRAGTTYHDLTEIKTQTIVEPAGWITIQLTHP-------APLLTDSNRDKP----LRTFFLQIAVMGMHQNGRDTHIRQVKVYAPRQ-----ATHFGLE----------IPEPSSIEFSSFATIR 175          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|813149471|ref|XP_012200382.1| (hypothetical protein SPRG_05703 [Saprolegnia parasitica CBS 223.65] >gi|641534844|gb|KDO28774.1| hypothetical protein SPRG_05703 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 220.705 bits (561), Expect = 5.629e-70
Identity = 100/163 (61.35%), Postives = 127/163 (77.91%), Query Frame = 0
Query:   22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYS 184
            E R+IG EAVW+LSTAKPGNGV Q+RDD++DTYWQSDG QPHLIN+QFHKKMT+ EV+LYLDY LDESYTP+KI+I+AG+TFHDLV+I+T  + EP GW  +P++         +  +G  +   P    LR FFLQI+++ MHQNGRDTH+RQVK+Y PR +
Sbjct:    2 EKREIGDEAVWTLSTAKPGNGVHQLRDDNLDTYWQSDGVQPHLINIQFHKKMTVHEVALYLDYKLDESYTPRKIAIRAGSTFHDLVDIKTQTIVEPSGWTVIPLQQ-------ALLALGQPSREKP----LRTFFLQIAVLGMHQNGRDTHIRQVKIYAPRVA 153          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|298711511|emb|CBJ26599.1| (Putative subunit of the Anaphase Promoting Complex [Ectocarpus siliculosus])

HSP 1 Score: 221.861 bits (564), Expect = 5.692e-70
Identity = 108/198 (54.55%), Postives = 139/198 (70.20%), Query Frame = 0
Query:   24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
            R+IG EAVWSLS+AKPGNGV+Q+RDD  DTYWQSDG QPHLIN+QFHKKMT++E++ +LD+S DESYTPKK+SI+AG++FHDLVE+    L EP GWV+VP+  P     + +       A  P   VLRA F+QI ++AMHQNGRDTH+RQVKV+GPR              +AS+    ++ EF S E   F+ +R
Sbjct:   30 REIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAAAIAADAAGGAEGP---VLRAHFVQICVVAMHQNGRDTHIRQVKVFGPR--------------LASVQHDPSLLEFISPEFETFACIR 210          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|669157944|ref|XP_008614534.1| (anaphase-promoting complex subunit 10 [Saprolegnia diclina VS20] >gi|530733890|gb|EQC32132.1| anaphase-promoting complex subunit 10 [Saprolegnia diclina VS20])

HSP 1 Score: 220.32 bits (560), Expect = 6.631e-70
Identity = 101/163 (61.96%), Postives = 126/163 (77.30%), Query Frame = 0
Query:   22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYS 184
            E R+IG EAVWSLSTAKPGNGV Q+RDD++DTYWQSDG QPHLIN+QFHKKMT+ EV+LYLDY LDESYTP+KI+I+AG+TFHDLV+I+T  + EP GW  +P++            +G  +   P    LR FFLQI+++ MHQNGRDTH+RQVK+Y PR +
Sbjct:    2 EKREIGDEAVWSLSTAKPGNGVHQLRDDNLDTYWQSDGVQPHLINIQFHKKMTVHEVALYLDYKLDESYTPRKIAIRAGSTFHDLVDIKTQTIVEPSGWTVIPLQQVLL-------ALGQPSREKP----LRTFFLQIAVLGMHQNGRDTHIRQVKIYAPRVA 153          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|676380471|ref|XP_009033514.1| (hypothetical protein AURANDRAFT_20412 [Aureococcus anophagefferens] >gi|323456624|gb|EGB12491.1| hypothetical protein AURANDRAFT_20412 [Aureococcus anophagefferens])

HSP 1 Score: 220.705 bits (561), Expect = 7.575e-70
Identity = 115/221 (52.04%), Postives = 142/221 (64.25%), Query Frame = 0
Query:    9 SSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIR--------DDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
            +S +  SPA      R+IG EAVWSLSTAKPGNGVEQIR        D++ +TYWQSDG QPHLIN+QFHKKM+I E++ YLDY LDESYTPKK+SI+AGTTFHDLVE++ V+L EP GWV V + +            GD       G  LRAFFLQ+ +++MHQNGRDTHVRQ K++GPR +    C+                  FTS  L QF+ +R
Sbjct:   11 TSELDVSPAN-----REIGDEAVWSLSTAKPGNGVEQIRAAPGGKRRDENTETYWQSDGGQPHLINIQFHKKMSISEMAFYLDYGLDESYTPKKMSIRAGTTFHDLVEVEVVDLHEPTGWVTVALSH------------GD-------GKALRAFFLQVCVVSMHQNGRDTHVRQAKIFGPR-TPIDVCAGKHA------------ARFTSVALTQFAVLR 194          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|1214668627|gb|OWY94262.1| (Anaphase-promoting complex subunit 10 [Phytophthora megakarya])

HSP 1 Score: 212.616 bits (540), Expect = 6.683e-67
Identity = 101/198 (51.01%), Postives = 133/198 (67.17%), Query Frame = 0
Query:   24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
            R++G +AVWSLS+AKPGNGV+Q+RD++MDTYWQSDG QPHL+N+QF +KM + EV+LYLDY LDESYTPKKI+I++G+T HDL EI   ++ EP GWV +P+       P+                 LR FFLQI I+AMHQNGRDTH+RQVK+Y PR +               LD   ++PE T+ + A +S +R
Sbjct:    5 REVGDDAVWSLSSAKPGNGVDQLRDNNMDTYWQSDGVQPHLVNIQFSRKMAVKEVALYLDYKLDESYTPKKIAIRSGSTVHDLKEIHVQHIAEPSGWVSIPLHTDDGSEPAA----------------LRTFFLQIVILAMHQNGRDTHIRQVKIYAPREANV-------------LD--WSVPEATTPQFAAYSCIR 171          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|301096061|ref|XP_002897129.1| (anaphase-promoting complex subunit 10 [Phytophthora infestans T30-4] >gi|262107448|gb|EEY65500.1| anaphase-promoting complex subunit 10 [Phytophthora infestans T30-4])

HSP 1 Score: 212.616 bits (540), Expect = 7.619e-67
Identity = 104/198 (52.53%), Postives = 135/198 (68.18%), Query Frame = 0
Query:   24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
            R++G +A+WSLS+AKPGNGV+Q+RDD+MDTYWQSDG QPHLIN+QF +KM I EV+LYLDY LDESYTPKKI+I++G+T HDL EI   ++ EP GW+ +P+   +AD  S                 LR FFLQ+ ++AMHQNGRDTH+RQVK+Y PR +               LD   T+PE T+ + A FS +R
Sbjct:   12 REVGDDAMWSLSSAKPGNGVDQLRDDNMDTYWQSDGVQPHLINIQFARKMVIKEVALYLDYKLDESYTPKKIAIRSGSTVHDLKEIHVQHIAEPSGWISIPL---HADEVSE-------------QAPLRTFFLQVVVLAMHQNGRDTHIRQVKIYAPRETNV-------------LD--WTIPEATTPQFAAFSCIR 178          
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|698801086|ref|XP_009833572.1| (hypothetical protein H257_09146 [Aphanomyces astaci] >gi|574111163|gb|ETV76659.1| hypothetical protein H257_09146 [Aphanomyces astaci])

HSP 1 Score: 211.075 bits (536), Expect = 2.952e-66
Identity = 96/164 (58.54%), Postives = 124/164 (75.61%), Query Frame = 0
Query:   22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQ 185
            E R+IG EAVW+LS+AK GNGV+Q+RDD++DTYWQSDGAQPHLIN+QFHKK T+ EV+LYLDY LDESYTPK I+++ GTTFHDLV++ T    EP GWV +P+    + +P+ +  + +          LR FFLQ+++  MHQNGRDTH+RQVKV+ PR  Q
Sbjct:    2 EKREIGDEAVWTLSSAKQGNGVQQLRDDNLDTYWQSDGAQPHLINIQFHKKTTVQEVALYLDYKLDESYTPKTITVRTGTTFHDLVDVLTHTTTEPTGWVTIPL----SCQPTDLSMLSEQP--------LRTFFLQLAVTGMHQNGRDTHIRQVKVFAPRQPQ 153          
The following BLAST results are available for this feature:
BLAST of EWM29413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111942|gb|EWM29413.1|3.590e-164100.00Anaphase-promoting complex, subunit 10/DOC domain ... [more]
gi|1173958570|gb|OQS04911.1|6.658e-7254.23anaphase-promoting complex subunit 10 [Thraustothe... [more]
gi|1173929805|gb|OQR82974.1|5.925e-7155.50anaphase-promoting complex subunit 10 [Achlya hypo... [more]
gi|813149471|ref|XP_012200382.1|5.629e-7061.35hypothetical protein SPRG_05703 [Saprolegnia paras... [more]
gi|298711511|emb|CBJ26599.1|5.692e-7054.55Putative subunit of the Anaphase Promoting Complex... [more]
gi|669157944|ref|XP_008614534.1|6.631e-7061.96anaphase-promoting complex subunit 10 [Saprolegnia... [more]
gi|676380471|ref|XP_009033514.1|7.575e-7052.04hypothetical protein AURANDRAFT_20412 [Aureococcus... [more]
gi|1214668627|gb|OWY94262.1|6.683e-6751.01Anaphase-promoting complex subunit 10 [Phytophthor... [more]
gi|301096061|ref|XP_002897129.1|7.619e-6752.53anaphase-promoting complex subunit 10 [Phytophthor... [more]
gi|698801086|ref|XP_009833572.1|2.952e-6658.54hypothetical protein H257_09146 [Aphanomyces astac... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1268rna1268Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications