EWM29413.1, cds1266 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|585111942|gb|EWM29413.1| (Anaphase-promoting complex, subunit 10/DOC domain protein [Nannochloropsis gaditana]) HSP 1 Score: 460.685 bits (1184), Expect = 3.590e-164 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0 Query: 1 MAPVGTETSSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221 MAPVGTETSSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR Sbjct: 1 MAPVGTETSSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|1173958570|gb|OQS04911.1| (anaphase-promoting complex subunit 10 [Thraustotheca clavata]) HSP 1 Score: 225.328 bits (573), Expect = 6.658e-72 Identity = 109/201 (54.23%), Postives = 140/201 (69.65%), Query Frame = 0 Query: 22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGT-MPEFTSAELAQFSTVR 221 ELR++G EAVWSLSTAKPGNGV Q+RDD++DTYWQSDG QPHLIN+QF KKMT+ E+++YLD+ LDESYTP+KISI+AG+TFHDLVEI+T + EP GW+ + + P PS + G LR FFLQI+++ MHQNGRDTH+RQVKV+ PR S +G +PE +S E + F+T+R Sbjct: 2 ELREVGDEAVWSLSTAKPGNGVYQLRDDNLDTYWQSDGVQPHLINIQFAKKMTVQEIAMYLDHKLDESYTPRKISIRAGSTFHDLVEIKTQTIVEPMGWITIQLMQP----PSHIANAGSEKP-------LRTFFLQIAVMGMHQNGRDTHIRQVKVFAPRQSH----------------LFGADIPEPSSIEFSSFATIR 175
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|1173929805|gb|OQR82974.1| (anaphase-promoting complex subunit 10 [Achlya hypogyna]) HSP 1 Score: 223.016 bits (567), Expect = 5.925e-71 Identity = 111/200 (55.50%), Postives = 139/200 (69.50%), Query Frame = 0 Query: 22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221 E R+IG EAVWSLSTAKPGNGV Q+RDD +DTYWQSDG QPHLIN+QF KKMT+ EV+LYLDY LDESYTP+KISI+AGTT+HDL EI+T + EP GW+ + + +P + D+ P LR FFLQI+++ MHQNGRDTH+RQVKVY PR +H +E +PE +S E + F+T+R Sbjct: 2 EKREIGDEAVWSLSTAKPGNGVHQLRDDSIDTYWQSDGVQPHLINIQFPKKMTVQEVALYLDYKLDESYTPRKISIRAGTTYHDLTEIKTQTIVEPAGWITIQLTHP-------APLLTDSNRDKP----LRTFFLQIAVMGMHQNGRDTHIRQVKVYAPRQ-----ATHFGLE----------IPEPSSIEFSSFATIR 175
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|813149471|ref|XP_012200382.1| (hypothetical protein SPRG_05703 [Saprolegnia parasitica CBS 223.65] >gi|641534844|gb|KDO28774.1| hypothetical protein SPRG_05703 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 220.705 bits (561), Expect = 5.629e-70 Identity = 100/163 (61.35%), Postives = 127/163 (77.91%), Query Frame = 0 Query: 22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYS 184 E R+IG EAVW+LSTAKPGNGV Q+RDD++DTYWQSDG QPHLIN+QFHKKMT+ EV+LYLDY LDESYTP+KI+I+AG+TFHDLV+I+T + EP GW +P++ + +G + P LR FFLQI+++ MHQNGRDTH+RQVK+Y PR + Sbjct: 2 EKREIGDEAVWTLSTAKPGNGVHQLRDDNLDTYWQSDGVQPHLINIQFHKKMTVHEVALYLDYKLDESYTPRKIAIRAGSTFHDLVDIKTQTIVEPSGWTVIPLQQ-------ALLALGQPSREKP----LRTFFLQIAVLGMHQNGRDTHIRQVKIYAPRVA 153
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|298711511|emb|CBJ26599.1| (Putative subunit of the Anaphase Promoting Complex [Ectocarpus siliculosus]) HSP 1 Score: 221.861 bits (564), Expect = 5.692e-70 Identity = 108/198 (54.55%), Postives = 139/198 (70.20%), Query Frame = 0 Query: 24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221 R+IG EAVWSLS+AKPGNGV+Q+RDD DTYWQSDG QPHLIN+QFHKKMT++E++ +LD+S DESYTPKK+SI+AG++FHDLVE+ L EP GWV+VP+ P + + A P VLRA F+QI ++AMHQNGRDTH+RQVKV+GPR +AS+ ++ EF S E F+ +R Sbjct: 30 REIGREAVWSLSSAKPGNGVDQLRDDSTDTYWQSDGGQPHLINIQFHKKMTVVEIAFHLDFSSDESYTPKKLSIRAGSSFHDLVEVTVKELHEPVGWVRVPLFAPGGGGAAAIAADAAGGAEGP---VLRAHFVQICVVAMHQNGRDTHIRQVKVFGPR--------------LASVQHDPSLLEFISPEFETFACIR 210
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|669157944|ref|XP_008614534.1| (anaphase-promoting complex subunit 10 [Saprolegnia diclina VS20] >gi|530733890|gb|EQC32132.1| anaphase-promoting complex subunit 10 [Saprolegnia diclina VS20]) HSP 1 Score: 220.32 bits (560), Expect = 6.631e-70 Identity = 101/163 (61.96%), Postives = 126/163 (77.30%), Query Frame = 0 Query: 22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYS 184 E R+IG EAVWSLSTAKPGNGV Q+RDD++DTYWQSDG QPHLIN+QFHKKMT+ EV+LYLDY LDESYTP+KI+I+AG+TFHDLV+I+T + EP GW +P++ +G + P LR FFLQI+++ MHQNGRDTH+RQVK+Y PR + Sbjct: 2 EKREIGDEAVWSLSTAKPGNGVHQLRDDNLDTYWQSDGVQPHLINIQFHKKMTVHEVALYLDYKLDESYTPRKIAIRAGSTFHDLVDIKTQTIVEPSGWTVIPLQQVLL-------ALGQPSREKP----LRTFFLQIAVLGMHQNGRDTHIRQVKIYAPRVA 153
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|676380471|ref|XP_009033514.1| (hypothetical protein AURANDRAFT_20412 [Aureococcus anophagefferens] >gi|323456624|gb|EGB12491.1| hypothetical protein AURANDRAFT_20412 [Aureococcus anophagefferens]) HSP 1 Score: 220.705 bits (561), Expect = 7.575e-70 Identity = 115/221 (52.04%), Postives = 142/221 (64.25%), Query Frame = 0 Query: 9 SSTITTSPAGSAKELRDIGHEAVWSLSTAKPGNGVEQIR--------DDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221 +S + SPA R+IG EAVWSLSTAKPGNGVEQIR D++ +TYWQSDG QPHLIN+QFHKKM+I E++ YLDY LDESYTPKK+SI+AGTTFHDLVE++ V+L EP GWV V + + GD G LRAFFLQ+ +++MHQNGRDTHVRQ K++GPR + C+ FTS L QF+ +R Sbjct: 11 TSELDVSPAN-----REIGDEAVWSLSTAKPGNGVEQIRAAPGGKRRDENTETYWQSDGGQPHLINIQFHKKMSISEMAFYLDYGLDESYTPKKMSIRAGTTFHDLVEVEVVDLHEPTGWVTVALSH------------GD-------GKALRAFFLQVCVVSMHQNGRDTHVRQAKIFGPR-TPIDVCAGKHA------------ARFTSVALTQFAVLR 194
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|1214668627|gb|OWY94262.1| (Anaphase-promoting complex subunit 10 [Phytophthora megakarya]) HSP 1 Score: 212.616 bits (540), Expect = 6.683e-67 Identity = 101/198 (51.01%), Postives = 133/198 (67.17%), Query Frame = 0 Query: 24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221 R++G +AVWSLS+AKPGNGV+Q+RD++MDTYWQSDG QPHL+N+QF +KM + EV+LYLDY LDESYTPKKI+I++G+T HDL EI ++ EP GWV +P+ P+ LR FFLQI I+AMHQNGRDTH+RQVK+Y PR + LD ++PE T+ + A +S +R Sbjct: 5 REVGDDAVWSLSSAKPGNGVDQLRDNNMDTYWQSDGVQPHLVNIQFSRKMAVKEVALYLDYKLDESYTPKKIAIRSGSTVHDLKEIHVQHIAEPSGWVSIPLHTDDGSEPAA----------------LRTFFLQIVILAMHQNGRDTHIRQVKIYAPREANV-------------LD--WSVPEATTPQFAAYSCIR 171
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|301096061|ref|XP_002897129.1| (anaphase-promoting complex subunit 10 [Phytophthora infestans T30-4] >gi|262107448|gb|EEY65500.1| anaphase-promoting complex subunit 10 [Phytophthora infestans T30-4]) HSP 1 Score: 212.616 bits (540), Expect = 7.619e-67 Identity = 104/198 (52.53%), Postives = 135/198 (68.18%), Query Frame = 0 Query: 24 RDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQASFCSHSRVEGIASLDTYGTMPEFTSAELAQFSTVR 221 R++G +A+WSLS+AKPGNGV+Q+RDD+MDTYWQSDG QPHLIN+QF +KM I EV+LYLDY LDESYTPKKI+I++G+T HDL EI ++ EP GW+ +P+ +AD S LR FFLQ+ ++AMHQNGRDTH+RQVK+Y PR + LD T+PE T+ + A FS +R Sbjct: 12 REVGDDAMWSLSSAKPGNGVDQLRDDNMDTYWQSDGVQPHLINIQFARKMVIKEVALYLDYKLDESYTPKKIAIRSGSTVHDLKEIHVQHIAEPSGWISIPL---HADEVSE-------------QAPLRTFFLQVVVLAMHQNGRDTHIRQVKIYAPRETNV-------------LD--WTIPEATTPQFAAFSCIR 178
BLAST of EWM29413.1 vs. NCBI_GenBank
Match: gi|698801086|ref|XP_009833572.1| (hypothetical protein H257_09146 [Aphanomyces astaci] >gi|574111163|gb|ETV76659.1| hypothetical protein H257_09146 [Aphanomyces astaci]) HSP 1 Score: 211.075 bits (536), Expect = 2.952e-66 Identity = 96/164 (58.54%), Postives = 124/164 (75.61%), Query Frame = 0 Query: 22 ELRDIGHEAVWSLSTAKPGNGVEQIRDDDMDTYWQSDGAQPHLINVQFHKKMTILEVSLYLDYSLDESYTPKKISIKAGTTFHDLVEIQTVNLKEPQGWVKVPVRNPYADRPSGVDTVGDATAGDPVGGVLRAFFLQISIIAMHQNGRDTHVRQVKVYGPRYSQ 185 E R+IG EAVW+LS+AK GNGV+Q+RDD++DTYWQSDGAQPHLIN+QFHKK T+ EV+LYLDY LDESYTPK I+++ GTTFHDLV++ T EP GWV +P+ + +P+ + + + LR FFLQ+++ MHQNGRDTH+RQVKV+ PR Q Sbjct: 2 EKREIGDEAVWTLSSAKQGNGVQQLRDDNLDTYWQSDGAQPHLINIQFHKKTTVQEVALYLDYKLDESYTPKTITVRTGTTFHDLVDVLTHTTTEPTGWVTIPL----SCQPTDLSMLSEQP--------LRTFFLQLAVTGMHQNGRDTHIRQVKVFAPRQPQ 153 The following BLAST results are available for this feature:
BLAST of EWM29413.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|