EWM29400.1, cds1261 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|585111929|gb|EWM29400.1| (BCP1 family [Nannochloropsis gaditana]) HSP 1 Score: 798.119 bits (2060), Expect = 0.000e+0 Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0
Query: 1 MKKKTKSTSSTPKGCGKRPHKDAEPAPDGTEAAELSLASSSSSSDDDYTEDEIKLYGTGEVGSGSSSSSSSDEEDPKNSTTGGANSTISKNYKEKERSIKEHEIKEENGKEVQVSFDVSDPEENFVFGIRSLLQWLEPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKNLITLSPCSVDLGRGNNKNGSSLPYAPNEAIYDRFEDELLVQAAEMNYCFARAPPQEAKKKEKEPNSKHELMKDGESDVKVAVEVLKKRKRSSKVGAKNDREGGESVAGQGVVISLIETKKLSECLRQMKEMVG 390
MKKKTKSTSSTPKGCGKRPHKDAEPAPDGTEAAELSLASSSSSSDDDYTEDEIKLYGTGEVGSGSSSSSSSDEEDPKNSTTGGANSTISKNYKEKERSIKEHEIKEENGKEVQVSFDVSDPEENFVFGIRSLLQWLEPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKNLITLSPCSVDLGRGNNKNGSSLPYAPNEAIYDRFEDELLVQAAEMNYCFARAPPQEAKKKEKEPNSKHELMKDGESDVKVAVEVLKKRKRSSKVGAKNDREGGESVAGQGVVISLIETKKLSECLRQMKEMVG
Sbjct: 1 MKKKTKSTSSTPKGCGKRPHKDAEPAPDGTEAAELSLASSSSSSDDDYTEDEIKLYGTGEVGSGSSSSSSSDEEDPKNSTTGGANSTISKNYKEKERSIKEHEIKEENGKEVQVSFDVSDPEENFVFGIRSLLQWLEPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKNLITLSPCSVDLGRGNNKNGSSLPYAPNEAIYDRFEDELLVQAAEMNYCFARAPPQEAKKKEKEPNSKHELMKDGESDVKVAVEVLKKRKRSSKVGAKNDREGGESVAGQGVVISLIETKKLSECLRQMKEMVG 390
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|950885878|ref|XP_014525940.1| (hypothetical protein JH06_4093 [Blastocystis sp. subtype 4] >gi|902860551|gb|KNB42497.1| hypothetical protein JH06_4093 [Blastocystis sp. subtype 4]) HSP 1 Score: 100.138 bits (248), Expect = 3.186e-20 Identity = 64/204 (31.37%), Postives = 107/204 (52.45%), Query Frame = 0
Query: 112 VQVSFDVSDPEENFVFGIRSLLQWL---EPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIK--NLITLSPCSVDLGRGNNKNGS-SLPYAPNEAIYDRFEDELLVQAAEMNYCFARA 309
+ V F+ SDP+E IR+ ++L + V+ + LAD +V++ +GS++ + E DV+AF T L+L ++ N+ I + +LR CP LK + E L P T + L+ R N P ++P L S ED WA N +T A + L+ ++PC + K+ L P+ ++ FEDEL+ + A +++ F A
Sbjct: 63 INVEFEFSDPKEEHFKSIRNFSRYLFLGTAKDVDFSPLADAVVKQVEVGSMVQVSGEDDVYAFLTLLNLQYYKDNQSIKDILS-ILRKNCPSELKDSFESFLSKP-TGLLLNERMRNFPPEVMPHLFESLGEDVKWALENSSTKEAFQYEYLLVIAPCFYEKTEPKRKSKKPKLNAGPDTCLFFHFEDELIKKYAALSFSFDVA 264
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|698778713|ref|XP_009822400.1| (hypothetical protein H257_01078 [Aphanomyces astaci] >gi|574122061|gb|ETV87537.1| hypothetical protein H257_01078 [Aphanomyces astaci]) HSP 1 Score: 96.6709 bits (239), Expect = 3.330e-19 Identity = 58/162 (35.80%), Postives = 88/162 (54.32%), Query Frame = 0
Query: 100 KEHEIKEENGKE---VQVSFDVSDPEENFVFGIRSLL--QWLEPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIK 256
+E + + NG + V V F +DP E ++ L+ +L P ++ ++LAD+IV++ +GS++ C ETDVF F T LSL ++ I + L+ +CP LK L L S + L+ R +NLP LVP LHS+ ++D WA N PAIK
Sbjct: 24 EEDIVLKSNGDQKENVDVDFVFTDPCEQNFHSVKQLISNNFLPPTALDTSNLADIIVKQVSIGSMVCCEGETDVFGFITALSLKTYENTPSIRQI-HSLVLEKCPKDLKPRLTSILSSKTVGLVLNRRIINLPYQLVPHLHSALQQDIDWAVENSID-PAIK 183
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|673015000|ref|XP_008861461.1| (hypothetical protein H310_00439 [Aphanomyces invadans] >gi|574483059|gb|ETW10050.1| hypothetical protein H310_00439 [Aphanomyces invadans]) HSP 1 Score: 95.9005 bits (237), Expect = 7.140e-19 Identity = 67/216 (31.02%), Postives = 113/216 (52.31%), Query Frame = 0
Query: 104 IKEENGKE---VQVSFDVSDP-EENFVFGIRSLL--QWLEPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKN------LITLSPCSVDLGRGNNKNGSSLPYA-PNEAI--YDRFEDELLVQAAEMNY 304
+ + NG + V + F +DP EENF ++ L+ +L P ++ ++LA++IV + +GS++ C ETDVF F T LSL + I + + L+ +CP LK L L + + ++ R +NLP LVP LHS+ ++D WA N PA+K+ + L+ VD+ G + P+ A+ +D FE+E L A++++
Sbjct: 28 VLKSNGDQKETVDIDFVFTDPCEENF-HSVKQLISTNFLPPTALDTSNLANIIVSQVSIGSMVCCEGETDVFGFITALSLKRYANEPSIRQI-ESLVLDKCPKDLKSRLTSILSTKTVGLVMNRRMINLPYQLVPHLHSALQQDIDWAIENTED-PAMKSSFKFDYFLILAGVQVDISSLKKPAGKKAKGSYPDPAVKSFDNFEEEFLEAQADLHF 240
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|568050233|gb|ETM47188.1| (hypothetical protein L914_08087 [Phytophthora parasitica]) HSP 1 Score: 90.8929 bits (224), Expect = 6.355e-17 Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 0
Query: 112 VQVSFDVSDPEENFVFGIRS-LLQWLEP-EGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKN------LITLSPCSVDL-GRGNNKNG--SSLPYAPNEAIYDRFEDELLVQAAEMNYCF 306
V V F SDP E ++ LL +L P + +V+ LA+ IV + G+++ E DV+ F T L+L I + + + +CP L+ L + V L+ R VNLP LVP LHS+ ED WA N+ T ++N + L+ C+ + G +K G S Y + FEDE L Q AE+++ F
Sbjct: 75 VSVDFLFSDPREAHFHSVKQFLLAYLPPTQPFDVSGLANAIVGQVTAGTMVCVEGEDDVYGFITALNLKGFANETSIQQILQYVTK-KCPSAELPKLQQILNTKNVGVVLNERMVNLPYQLVPALHSALHEDIEWAIQNEDT-EELRNSFKMDYFLILATCTEEKSGSSGSKQGKKSKTAYEQTAKFFHNFEDEFLEQEAELSFSF 278
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|813134060|ref|XP_012198028.1| (hypothetical protein SPRG_04048 [Saprolegnia parasitica CBS 223.65] >gi|641537580|gb|KDO31433.1| hypothetical protein SPRG_04048 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 89.7373 bits (221), Expect = 9.626e-17 Identity = 65/206 (31.55%), Postives = 101/206 (49.03%), Query Frame = 0
Query: 112 VQVSFDVSDP-EENFVFGIRSLLQWLEPEGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKN------LITLSPCSVDLGRGNNKNGSSLPYA----PNEAIYDRFEDELLVQAAEMNYCF 306
V+V F +DP E NF + L+Q+L ++ ++LA++IV + +G+I+ ETD F T LSL ++ I L L+ +CP K L+ L + + + R +NLP LVP +H + ++D WA N+AT P +KN + L+ V+ G A P YD FEDE L Q A++ + F
Sbjct: 35 VEVDFVFTDPCEANFHSVKQHLIQFLPASKLDASNLANIIVGQVTVGTIVCNEGETDAFGLITALSLKRYEAEPSIQQLM-SLVISKCPDATKPRLDQILSTSNVGLVISRRMINLPYQLVPHMHDALQKDIDWAIENEAT-PELKNSYKFDYFLMLAGVQVEKQAKKAPAGKKAKAAAYTDPAIKTYDNFEDEFLEQEADVAFSF 238
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|325179623|emb|CCA14021.1| (BCCIP family protein putative [Albugo laibachii Nc14]) HSP 1 Score: 90.1225 bits (222), Expect = 1.379e-16 Identity = 62/212 (29.25%), Postives = 102/212 (48.11%), Query Frame = 0
Query: 105 KEENGKE--VQVSFDVSDPEENFVFGIRSLLQWLEPEGV--NVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWA-----QSNDATFPAIKNLITLSPCSVDLGRGNNKNGSSLP-YAPNEAIYDRFEDELLVQAAEMNYCF 306
K ++G E V V F SDP++ I+ L+ + + LAD+IV++ +G+++ + E D + F T L+L +++ + I L +R CP K E L + + +FL+ R NLP L+P LHS+ +D WA QS F + L+ CS++ K + +A +Y +FEDE L A++ Y F
Sbjct: 65 KADSGNEDLVNVEFVFSDPKQCHYQSIKQLMSSCLSASLSLDTAELADIIVDQVEIGTVVCVSDEPDAYGFITVLNLRHYEERKCIQQLL-SYVRKHCPLDQKDEFEEMLKTKDVGLFLNERLFNLPYQLIPALHSALHQDIEWAISNSEQSRHKKF-HFDYFLVLTTCSIEQVNVERKARTKADNHAVQTKLYQKFEDEFLESQAQLMYSF 274
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|566024541|gb|ETI47452.1| (hypothetical protein F443_08369 [Phytophthora parasitica P1569]) HSP 1 Score: 89.7373 bits (221), Expect = 1.808e-16 Identity = 64/206 (31.07%), Postives = 98/206 (47.57%), Query Frame = 0
Query: 112 VQVSFDVSDPEENFVFGIRS-LLQWLEP-EGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKN------LITLSPCSVDL-GRGNNKNG--SSLPYAPNEAIYDRFEDELLVQAAEMNYCF 306
V V F SDP E ++ LL +L P + +V+ LA+ IV + G+++ E DV+ F T L+L I + + + +CP L+ L + + L+ R VNLP LVP LHS+ ED WA N+ T ++N + L+ C+ + G +K G S Y + FEDE L Q AE+++ F
Sbjct: 75 VSVDFLFSDPREAHFHSVKQFLLAYLPPTQPFDVSGLANAIVGQVTAGTMVCVEGEDDVYGFITALNLKGFANETSIQQILQYVTK-KCPSAELPKLQQILNTKNVGLVLNERMVNLPYQLVPALHSALHEDIEWAIQNEDT-EELRNSFKMDYFLILATCTEEKSGSSGSKQGKKSKTAYEQTAKFFHNFEDEFLEQEAELSFSF 278
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|568019783|gb|ETL93924.1| (hypothetical protein L917_08023 [Phytophthora parasitica] >gi|570986172|gb|ETP45274.1| hypothetical protein F442_08311 [Phytophthora parasitica P10297]) HSP 1 Score: 89.7373 bits (221), Expect = 1.826e-16 Identity = 64/206 (31.07%), Postives = 98/206 (47.57%), Query Frame = 0
Query: 112 VQVSFDVSDPEENFVFGIRS-LLQWLEP-EGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKN------LITLSPCSVDL-GRGNNKNG--SSLPYAPNEAIYDRFEDELLVQAAEMNYCF 306
V V F SDP E ++ LL +L P + +V+ LA+ IV + G+++ E DV+ F T L+L I + + + +CP L+ L + + L+ R VNLP LVP LHS+ ED WA N+ T ++N + L+ C+ + G +K G S Y + FEDE L Q AE+++ F
Sbjct: 75 VSVDFLFSDPREAHFHSVKQFLLAYLPPTQPFDVSGLANAIVGQVTAGTMVCVEGEDDVYGFITALNLKGFANETSIQQILQYVTK-KCPSAELPKLQQILNTKNVGLVLNERMVNLPYQLVPALHSALHEDIEWAIQNEDT-EELRNSFKMDYFLILATCTEEKSGSSGSKQGKKSKTAYEQTAKFFHNFEDEFLEQEAELSFSF 278
BLAST of EWM29400.1 vs. NCBI_GenBank
Match: gi|567961837|gb|ETK87374.1| (hypothetical protein L915_08201 [Phytophthora parasitica] >gi|567990563|gb|ETL40791.1| hypothetical protein L916_08125 [Phytophthora parasitica] >gi|570951977|gb|ETP17234.1| hypothetical protein F441_08354 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 89.7373 bits (221), Expect = 1.844e-16 Identity = 64/206 (31.07%), Postives = 98/206 (47.57%), Query Frame = 0
Query: 112 VQVSFDVSDPEENFVFGIRS-LLQWLEP-EGVNVTSLADLIVEEKGLGSIIHCTAETDVFAFATTLSLAAHQKNEGIHSLCDKLLRPRCPPTLKKALEHALGSPETFVFLHARFVNLPLPLVPVLHSSSEEDRAWAQSNDATFPAIKN------LITLSPCSVDL-GRGNNKNG--SSLPYAPNEAIYDRFEDELLVQAAEMNYCF 306
V V F SDP E ++ LL +L P + +V+ LA+ IV + G+++ E DV+ F T L+L I + + + +CP L+ L + + L+ R VNLP LVP LHS+ ED WA N+ T ++N + L+ C+ + G +K G S Y + FEDE L Q AE+++ F
Sbjct: 75 VSVDFLFSDPREAHFHSVKQFLLAYLPPTQPFDVSGLANAIVGQVTAGTMVCVEGEDDVYGFITALNLKGFANETSIQQILQYVTK-KCPSAELPKLQQILNTKNVGLVLNERMVNLPYQLVPALHSALHEDIEWAIQNEDT-EELRNSFKMDYFLILATCTEEKSGSSGSKQGKKSKTAYEQTAKFFHNFEDEFLEQEAELSFSF 278 The following BLAST results are available for this feature:
BLAST of EWM29400.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|