EWM29430.1, cds1240 (CDS) Nannochloropsis gaditana

Overview
NameEWM29430.1
Unique Namecds1240
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:126295..126310 -
Alignment locationCM002457.1:125871..125970 -
Alignment locationCM002457.1:125687..125762 -
Alignment locationCM002457.1:125498..125564 -
Alignment locationCM002457.1:125164..125245 -
Alignment locationCM002457.1:124983..125109 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29430.1
Productcell division topological specificity factor
Orig transcript idgnl|cribi|Naga_100305g2.5916.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:126295..126310 -
CM002457.1supercontigCM002457.1:125871..125970 -
CM002457.1supercontigCM002457.1:125687..125762 -
CM002457.1supercontigCM002457.1:125498..125564 -
CM002457.1supercontigCM002457.1:125164..125245 -
CM002457.1supercontigCM002457.1:124983..125109 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0032955regulation of division septum assembly
GO:0051301cell division
Vocabulary: INTERPRO
TermDefinition
IPR005527MinE
Homology
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|585111961|gb|EWM29430.1| (cell division topological specificity factor [Nannochloropsis gaditana])

HSP 1 Score: 314.309 bits (804), Expect = 2.136e-108
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query:    1 MHAAPRNSKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQLDEKRTDRFLFTGRRSLASCSLSSMLSRTEPGLSRSPGLTL 155
            MHAAPRNSKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQLDEKRTDRFLFTGRRSLASCSLSSMLSRTEPGLSRSPGLTL
Sbjct:    1 MHAAPRNSKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQLDEKRTDRFLFTGRRSLASCSLSSMLSRTEPGLSRSPGLTL 155          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|298715509|emb|CBJ28079.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 82.0333 bits (201), Expect = 6.228e-17
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 0
Query:   29 FGLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAAN 108
             G+ST+  S R VA+ERLSIILAHQR    L  ++++ LQA+V  CV+KY+ V   + + + VKQDG +DVFEMQ+ LAG ++ 
Sbjct:   61 VGVSTNATS-RGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVKKYISVDASKPIQLSVKQDGAVDVFEMQVHLAGESSQ 143          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|698802876|ref|XP_009834467.1| (cell division topological specificity factor MinE [Aphanomyces astaci] >gi|574110844|gb|ETV76342.1| cell division topological specificity factor MinE [Aphanomyces astaci])

HSP 1 Score: 76.2554 bits (186), Expect = 4.254e-15
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 0
Query:   40 NVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQI 100
            N+AKERL IILAHQR    LS VN+  LQA++LACVQ+++ V   E V+I VK +G +D+FEMQ+
Sbjct:   29 NIAKERLQIILAHQRGSVALSGVNLNALQAELLACVQRHIAVADGEKVNIAVKHEGNLDIFEMQV 93          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|673049129|ref|XP_008878525.1| (cell division topological specificity factor MinE [Aphanomyces invadans] >gi|574465720|gb|ETV92755.1| cell division topological specificity factor MinE [Aphanomyces invadans])

HSP 1 Score: 75.0998 bits (183), Expect = 8.604e-15
Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 0
Query:   39 RNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIAL 102
            +N+AKERL IILAHQR    LS V++  LQA++LACVQ+++ V   E V+I VK +G +D+FEMQ+ +
Sbjct:   29 KNIAKERLQIILAHQRGSQALSGVDLNALQAELLACVQRHIAVADGERVNIAVKHEGSLDIFEMQVPV 96          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|1173953000|gb|OQS00572.1| (hypothetical protein ACHHYP_03420 [Achlya hypogyna])

HSP 1 Score: 74.3294 bits (181), Expect = 1.463e-14
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 0
Query:   30 GLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGA 105
            G + +  S + +AKERL IILAHQR    L+ V++  LQ ++LACVQ+++ V   E V+I VKQ+G +D+FEMQ+ ++ A
Sbjct:   12 GATVAPSSTKTIAKERLQIILAHQRGSQALAGVDLGALQEELLACVQRHIAVAQGEKVNIAVKQEGSMDIFEMQVPVSAA 91          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|1173958851|gb|OQS05154.1| (hypothetical protein THRCLA_20704 [Thraustotheca clavata])

HSP 1 Score: 73.1738 bits (178), Expect = 4.061e-14
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 0
Query:   37 SPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQI 100
            S + +AKERL IILAHQR    L+ V++ +LQ ++LACVQ+++ V   E V+I VKQ+G +D+FEMQ+
Sbjct:   18 SAKTIAKERLQIILAHQRGSQALAGVDLAKLQEELLACVQRHIAVAKGEKVNIAVKQEGSMDIFEMQV 85          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|813164920|ref|XP_012203520.1| (hypothetical protein SPRG_09009 [Saprolegnia parasitica CBS 223.65] >gi|641531650|gb|KDO25710.1| hypothetical protein SPRG_09009 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.7886 bits (177), Expect = 7.221e-14
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query:   33 TSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALA 103
            +S  S + +AKERL IILAHQR    L+ V++  LQ ++LACVQ+++ V   E V+I VKQ+G +D+FEMQ+ ++
Sbjct:   18 SSAASTKTIAKERLQIILAHQRGSQALAGVDLGALQEELLACVQRHIAVAQGEKVNIAVKQEGSMDIFEMQVPVS 92          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|325187576|emb|CCA22113.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325188866|emb|CCA23395.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 73.1738 bits (178), Expect = 9.660e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 0
Query:   31 LSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAG 104
            LS+S     ++AKERL IILAHQR    L+ V++  LQ D+L CVQ+Y+ V  +  ++I VKQ+G  D+FEMQ+ + G
Sbjct:   54 LSSSKPMSASIAKERLQIILAHQRGSQILAGVDLAALQKDLLECVQRYIGVTHDANINIAVKQEGSFDIFEMQVPVDG 131          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|675209427|ref|XP_008913598.1| (cell division topological specificity factor MinE [Phytophthora parasitica INRA-310] >gi|567948356|gb|ETK74105.1| cell division topological specificity factor MinE [Phytophthora parasitica] >gi|567977019|gb|ETL27530.1| cell division topological specificity factor MinE [Phytophthora parasitica] >gi|568086150|gb|ETN01043.1| cell division topological specificity factor MinE [Phytophthora parasitica INRA-310] >gi|570314588|gb|ETO62536.1| cell division topological specificity factor MinE [Phytophthora parasitica P1976] >gi|570938353|gb|ETP03610.1| cell division topological specificity factor MinE [Phytophthora parasitica CJ01A1] >gi|570968655|gb|ETP31774.1| cell division topological specificity factor MinE [Phytophthora parasitica P10297] >gi|970663644|gb|KUG00764.1| Cell division topological specificity factor [Phytophthora nicotianae])

HSP 1 Score: 72.0182 bits (175), Expect = 1.512e-13
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   29 FGLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAG 104
            FG +    S ++VAKERL IILAHQR    L+ V++  LQ ++L CVQ+++KV     ++I VK +G +D+FEMQ+ + G
Sbjct:   21 FGEAEQASSSKSVAKERLQIILAHQRGSQVLAGVDLAALQKELLECVQRHIKVANGANINIAVKNEGHLDIFEMQVPVDG 100          
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|566010832|gb|ETI33743.1| (cell division topological specificity factor MinE [Phytophthora parasitica P1569] >gi|568036360|gb|ETM33972.1| cell division topological specificity factor MinE [Phytophthora parasitica])

HSP 1 Score: 72.0182 bits (175), Expect = 1.613e-13
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query:   29 FGLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAG 104
            FG +    S ++VAKERL IILAHQR    L+ V++  LQ ++L CVQ+++KV     ++I VK +G +D+FEMQ+ + G
Sbjct:   21 FGEAEQASSSKSVAKERLQIILAHQRGSQVLAGVDLAALQNELLECVQRHIKVANGANINIAVKNEGHLDIFEMQVPVDG 100          
The following BLAST results are available for this feature:
BLAST of EWM29430.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111961|gb|EWM29430.1|2.136e-108100.00cell division topological specificity factor [Nann... [more]
gi|298715509|emb|CBJ28079.1|6.228e-1750.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|698802876|ref|XP_009834467.1|4.254e-1556.92cell division topological specificity factor MinE ... [more]
gi|673049129|ref|XP_008878525.1|8.604e-1552.94cell division topological specificity factor MinE ... [more]
gi|1173953000|gb|OQS00572.1|1.463e-1446.25hypothetical protein ACHHYP_03420 [Achlya hypogyna... [more]
gi|1173958851|gb|OQS05154.1|4.061e-1451.47hypothetical protein THRCLA_20704 [Thraustotheca c... [more]
gi|813164920|ref|XP_012203520.1|7.221e-1448.00hypothetical protein SPRG_09009 [Saprolegnia paras... [more]
gi|325187576|emb|CCA22113.1|9.660e-1447.44conserved hypothetical protein [Albugo laibachii N... [more]
gi|675209427|ref|XP_008913598.1|1.512e-1345.00cell division topological specificity factor MinE ... [more]
gi|566010832|gb|ETI33743.1|1.613e-1345.00cell division topological specificity factor MinE ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1241rna1241Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications