EWM29430.1, cds1240 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|585111961|gb|EWM29430.1| (cell division topological specificity factor [Nannochloropsis gaditana]) HSP 1 Score: 314.309 bits (804), Expect = 2.136e-108 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
Query: 1 MHAAPRNSKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQLDEKRTDRFLFTGRRSLASCSLSSMLSRTEPGLSRSPGLTL 155
MHAAPRNSKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQLDEKRTDRFLFTGRRSLASCSLSSMLSRTEPGLSRSPGLTL
Sbjct: 1 MHAAPRNSKEQIEAMRDLALRFARAFEGFGLSTSLQSPRNVAKERLSIILAHQRLSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAANLSAGKQLDEKRTDRFLFTGRRSLASCSLSSMLSRTEPGLSRSPGLTL 155
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|298715509|emb|CBJ28079.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 82.0333 bits (201), Expect = 6.228e-17 Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 0
Query: 29 FGLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGAAAN 108
G+ST+ S R VA+ERLSIILAHQR L ++++ LQA+V CV+KY+ V + + + VKQDG +DVFEMQ+ LAG ++
Sbjct: 61 VGVSTNATS-RGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVKKYISVDASKPIQLSVKQDGAVDVFEMQVHLAGESSQ 143
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|698802876|ref|XP_009834467.1| (cell division topological specificity factor MinE [Aphanomyces astaci] >gi|574110844|gb|ETV76342.1| cell division topological specificity factor MinE [Aphanomyces astaci]) HSP 1 Score: 76.2554 bits (186), Expect = 4.254e-15 Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 0
Query: 40 NVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQI 100
N+AKERL IILAHQR LS VN+ LQA++LACVQ+++ V E V+I VK +G +D+FEMQ+
Sbjct: 29 NIAKERLQIILAHQRGSVALSGVNLNALQAELLACVQRHIAVADGEKVNIAVKHEGNLDIFEMQV 93
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|673049129|ref|XP_008878525.1| (cell division topological specificity factor MinE [Aphanomyces invadans] >gi|574465720|gb|ETV92755.1| cell division topological specificity factor MinE [Aphanomyces invadans]) HSP 1 Score: 75.0998 bits (183), Expect = 8.604e-15 Identity = 36/68 (52.94%), Postives = 51/68 (75.00%), Query Frame = 0
Query: 39 RNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIAL 102
+N+AKERL IILAHQR LS V++ LQA++LACVQ+++ V E V+I VK +G +D+FEMQ+ +
Sbjct: 29 KNIAKERLQIILAHQRGSQALSGVDLNALQAELLACVQRHIAVADGERVNIAVKHEGSLDIFEMQVPV 96
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|1173953000|gb|OQS00572.1| (hypothetical protein ACHHYP_03420 [Achlya hypogyna]) HSP 1 Score: 74.3294 bits (181), Expect = 1.463e-14 Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 30 GLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAGA 105
G + + S + +AKERL IILAHQR L+ V++ LQ ++LACVQ+++ V E V+I VKQ+G +D+FEMQ+ ++ A
Sbjct: 12 GATVAPSSTKTIAKERLQIILAHQRGSQALAGVDLGALQEELLACVQRHIAVAQGEKVNIAVKQEGSMDIFEMQVPVSAA 91
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|1173958851|gb|OQS05154.1| (hypothetical protein THRCLA_20704 [Thraustotheca clavata]) HSP 1 Score: 73.1738 bits (178), Expect = 4.061e-14 Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 0
Query: 37 SPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQI 100
S + +AKERL IILAHQR L+ V++ +LQ ++LACVQ+++ V E V+I VKQ+G +D+FEMQ+
Sbjct: 18 SAKTIAKERLQIILAHQRGSQALAGVDLAKLQEELLACVQRHIAVAKGEKVNIAVKQEGSMDIFEMQV 85
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|813164920|ref|XP_012203520.1| (hypothetical protein SPRG_09009 [Saprolegnia parasitica CBS 223.65] >gi|641531650|gb|KDO25710.1| hypothetical protein SPRG_09009 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 72.7886 bits (177), Expect = 7.221e-14 Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query: 33 TSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALA 103
+S S + +AKERL IILAHQR L+ V++ LQ ++LACVQ+++ V E V+I VKQ+G +D+FEMQ+ ++
Sbjct: 18 SSAASTKTIAKERLQIILAHQRGSQALAGVDLGALQEELLACVQRHIAVAQGEKVNIAVKQEGSMDIFEMQVPVS 92
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|325187576|emb|CCA22113.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325188866|emb|CCA23395.1| conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 73.1738 bits (178), Expect = 9.660e-14 Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 0
Query: 31 LSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAG 104
LS+S ++AKERL IILAHQR L+ V++ LQ D+L CVQ+Y+ V + ++I VKQ+G D+FEMQ+ + G
Sbjct: 54 LSSSKPMSASIAKERLQIILAHQRGSQILAGVDLAALQKDLLECVQRYIGVTHDANINIAVKQEGSFDIFEMQVPVDG 131
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|675209427|ref|XP_008913598.1| (cell division topological specificity factor MinE [Phytophthora parasitica INRA-310] >gi|567948356|gb|ETK74105.1| cell division topological specificity factor MinE [Phytophthora parasitica] >gi|567977019|gb|ETL27530.1| cell division topological specificity factor MinE [Phytophthora parasitica] >gi|568086150|gb|ETN01043.1| cell division topological specificity factor MinE [Phytophthora parasitica INRA-310] >gi|570314588|gb|ETO62536.1| cell division topological specificity factor MinE [Phytophthora parasitica P1976] >gi|570938353|gb|ETP03610.1| cell division topological specificity factor MinE [Phytophthora parasitica CJ01A1] >gi|570968655|gb|ETP31774.1| cell division topological specificity factor MinE [Phytophthora parasitica P10297] >gi|970663644|gb|KUG00764.1| Cell division topological specificity factor [Phytophthora nicotianae]) HSP 1 Score: 72.0182 bits (175), Expect = 1.512e-13 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 29 FGLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAG 104
FG + S ++VAKERL IILAHQR L+ V++ LQ ++L CVQ+++KV ++I VK +G +D+FEMQ+ + G
Sbjct: 21 FGEAEQASSSKSVAKERLQIILAHQRGSQVLAGVDLAALQKELLECVQRHIKVANGANINIAVKNEGHLDIFEMQVPVDG 100
BLAST of EWM29430.1 vs. NCBI_GenBank
Match: gi|566010832|gb|ETI33743.1| (cell division topological specificity factor MinE [Phytophthora parasitica P1569] >gi|568036360|gb|ETM33972.1| cell division topological specificity factor MinE [Phytophthora parasitica]) HSP 1 Score: 72.0182 bits (175), Expect = 1.613e-13 Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0
Query: 29 FGLSTSLQSPRNVAKERLSIILAHQR----LSDVNIQQLQADVLACVQKYVKVRPEEAVSIKVKQDGGIDVFEMQIALAG 104
FG + S ++VAKERL IILAHQR L+ V++ LQ ++L CVQ+++KV ++I VK +G +D+FEMQ+ + G
Sbjct: 21 FGEAEQASSSKSVAKERLQIILAHQRGSQVLAGVDLAALQNELLECVQRHIKVANGANINIAVKNEGHLDIFEMQVPVDG 100 The following BLAST results are available for this feature:
BLAST of EWM29430.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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