EWM29435.1, cds1238 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|585111968|gb|EWM29435.1| (histidyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 162.925 bits (411), Expect = 6.789e-51 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEISRQGELGSSEEGDDRGER 79
MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEISRQGELGSSEEGDDRGER
Sbjct: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEISRQGELGSSEEGDDRGER 79
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|501754701|emb|CCG81927.1| (Histidyl-tRNA synthetase [Taphrina deformans PYCC 5710]) HSP 1 Score: 98.2117 bits (243), Expect = 3.601e-22 Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEI 61
M +GR REFYQCDFD+AG Y +MVPDAEVL + VEIL AL I F IKLNHRKILD +FEI
Sbjct: 163 MTKGRMREFYQCDFDVAGQYDSMVPDAEVLRILVEILNALEIKDFTIKLNHRKILDGIFEI 223
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|298714010|emb|CBJ27242.1| (Histidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase [Ectocarpus siliculosus]) HSP 1 Score: 98.2117 bits (243), Expect = 4.046e-22 Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 0
Query: 4 GRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEI 61
GRFREFYQCDFDIAG Y MVPDAEVL+VA EIL +LPIG F IKLNHR++LD++ +I
Sbjct: 613 GRFREFYQCDFDIAGNYGLMVPDAEVLSVACEILSSLPIGNFQIKLNHRRLLDAILDI 670
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|1183339864|gb|ORX68834.1| (histidyl-tRNA synthetase [Linderina pennispora]) HSP 1 Score: 97.8265 bits (242), Expect = 4.163e-22 Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEIS 62
M +GR REFYQCD+DIAG Y M+PDAE + VAVE+L +L +G F IK+NHRKILD++FE+S
Sbjct: 171 MTKGRMREFYQCDYDIAGQYDAMIPDAECVRVAVEVLTSLDVGSFVIKINHRKILDAIFEVS 232
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|397596695|gb|EJK56825.1| (hypothetical protein THAOC_23204, partial [Thalassiosira oceanica]) HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-22 Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEI 61
M++GR+REFYQCDFDIAG Y MVPD+E L VA EIL ALPIG F IKLNHR++LD++ +I
Sbjct: 480 MSKGRYREFYQCDFDIAGHYGRMVPDSECLAVACEILDALPIGDFGIKLNHRRLLDAILDI 540
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|673030942|ref|XP_008869432.1| (histidine-tRNA ligase [Aphanomyces invadans] >gi|574474583|gb|ETW01584.1| histidine-tRNA ligase [Aphanomyces invadans]) HSP 1 Score: 97.8265 bits (242), Expect = 4.970e-22 Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALP-IGPFAIKLNHRKILDSVFEI 61
+ARGRFREFYQCDFDIAG YPTM+ DAEV+++ +E+L+ P +GPF IKL+HRK+LD++ EI
Sbjct: 591 IARGRFREFYQCDFDIAGVYPTMLADAEVISIGIEVLQQFPELGPFKIKLSHRKLLDAILEI 652
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|1173957409|gb|OQS03938.1| (histidyl-tRNA synthetase, partial [Thraustotheca clavata]) HSP 1 Score: 97.4413 bits (241), Expect = 6.367e-22 Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALP-IGPFAIKLNHRKILDSVFEI 61
MARGRFREFYQCDFDIAGTYP M+ DAEV+++ +E+L+ P +G F IKL+HRK+LD+V +I
Sbjct: 592 MARGRFREFYQCDFDIAGTYPLMLADAEVISIGIEVLKEFPELGSFKIKLSHRKLLDAVLDI 653
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|552818699|ref|XP_005845244.1| (hypothetical protein CHLNCDRAFT_36479 [Chlorella variabilis] >gi|307104891|gb|EFN53142.1| hypothetical protein CHLNCDRAFT_36479 [Chlorella variabilis]) HSP 1 Score: 97.0561 bits (240), Expect = 6.549e-22 Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEIS 62
MARGRFREF+QCDFDIAG+YP+MVPDAEVL V VEIL L +G + IKLNHR +LDS+ +I+
Sbjct: 99 MARGRFREFFQCDFDIAGSYPSMVPDAEVLKVLVEILDDLQLGEYEIKLNHRLLLDSMLDIA 160
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|1071045894|ref|XP_018278309.1| (histidyl-tRNA synthetase [Cutaneotrichosporon oleaginosus] >gi|831332252|gb|KLT41818.1| histidyl-tRNA synthetase [Cutaneotrichosporon oleaginosus]) HSP 1 Score: 97.0561 bits (240), Expect = 7.223e-22 Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEIS 62
M++GR REFYQCDFDIAGTY MVPDAE+L + E L AL IG + IKLNHRKILD +FE++
Sbjct: 158 MSKGRMREFYQCDFDIAGTYDPMVPDAEILYILCEALNALEIGEYTIKLNHRKILDGIFELA 219
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|698820391|ref|XP_009843224.1| (histidine-tRNA ligase [Aphanomyces astaci] >gi|574101675|gb|ETV67236.1| histidine-tRNA ligase [Aphanomyces astaci]) HSP 1 Score: 97.4413 bits (241), Expect = 7.625e-22 Identity = 40/62 (64.52%), Postives = 54/62 (87.10%), Query Frame = 0
Query: 1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALP-IGPFAIKLNHRKILDSVFEI 61
+ARGRFREFYQCDFDIAG YPTM+ DAEV+++ +E+L+ P +GPF IKL+HRK+LD++ E+
Sbjct: 591 IARGRFREFYQCDFDIAGVYPTMLADAEVISIGIEVLQQFPELGPFKIKLSHRKLLDAILEL 652 The following BLAST results are available for this feature:
BLAST of EWM29435.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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