EWM29435.1, cds1238 (CDS) Nannochloropsis gaditana

Overview
NameEWM29435.1
Unique Namecds1238
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:122005..122056 -
Alignment locationCM002457.1:121683..121800 -
Alignment locationCM002457.1:121478..121491 -
Alignment locationCM002457.1:121372..121427 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29435.1
Producthistidyl-trna synthetase
Orig transcript idgnl|cribi|Naga_102318g1.4409.mrna
GeneHAL
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:122005..122056 -
CM002457.1supercontigCM002457.1:121683..121800 -
CM002457.1supercontigCM002457.1:121478..121491 -
CM002457.1supercontigCM002457.1:121372..121427 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR004516HisRS/HisZ
Homology
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|585111968|gb|EWM29435.1| (histidyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 162.925 bits (411), Expect = 6.789e-51
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEISRQGELGSSEEGDDRGER 79
            MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEISRQGELGSSEEGDDRGER
Sbjct:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEISRQGELGSSEEGDDRGER 79          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|501754701|emb|CCG81927.1| (Histidyl-tRNA synthetase [Taphrina deformans PYCC 5710])

HSP 1 Score: 98.2117 bits (243), Expect = 3.601e-22
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEI 61
            M +GR REFYQCDFD+AG Y +MVPDAEVL + VEIL AL I  F IKLNHRKILD +FEI
Sbjct:  163 MTKGRMREFYQCDFDVAGQYDSMVPDAEVLRILVEILNALEIKDFTIKLNHRKILDGIFEI 223          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|298714010|emb|CBJ27242.1| (Histidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase [Ectocarpus siliculosus])

HSP 1 Score: 98.2117 bits (243), Expect = 4.046e-22
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    4 GRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEI 61
            GRFREFYQCDFDIAG Y  MVPDAEVL+VA EIL +LPIG F IKLNHR++LD++ +I
Sbjct:  613 GRFREFYQCDFDIAGNYGLMVPDAEVLSVACEILSSLPIGNFQIKLNHRRLLDAILDI 670          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|1183339864|gb|ORX68834.1| (histidyl-tRNA synthetase [Linderina pennispora])

HSP 1 Score: 97.8265 bits (242), Expect = 4.163e-22
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEIS 62
            M +GR REFYQCD+DIAG Y  M+PDAE + VAVE+L +L +G F IK+NHRKILD++FE+S
Sbjct:  171 MTKGRMREFYQCDYDIAGQYDAMIPDAECVRVAVEVLTSLDVGSFVIKINHRKILDAIFEVS 232          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|397596695|gb|EJK56825.1| (hypothetical protein THAOC_23204, partial [Thalassiosira oceanica])

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-22
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEI 61
            M++GR+REFYQCDFDIAG Y  MVPD+E L VA EIL ALPIG F IKLNHR++LD++ +I
Sbjct:  480 MSKGRYREFYQCDFDIAGHYGRMVPDSECLAVACEILDALPIGDFGIKLNHRRLLDAILDI 540          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|673030942|ref|XP_008869432.1| (histidine-tRNA ligase [Aphanomyces invadans] >gi|574474583|gb|ETW01584.1| histidine-tRNA ligase [Aphanomyces invadans])

HSP 1 Score: 97.8265 bits (242), Expect = 4.970e-22
Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALP-IGPFAIKLNHRKILDSVFEI 61
            +ARGRFREFYQCDFDIAG YPTM+ DAEV+++ +E+L+  P +GPF IKL+HRK+LD++ EI
Sbjct:  591 IARGRFREFYQCDFDIAGVYPTMLADAEVISIGIEVLQQFPELGPFKIKLSHRKLLDAILEI 652          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|1173957409|gb|OQS03938.1| (histidyl-tRNA synthetase, partial [Thraustotheca clavata])

HSP 1 Score: 97.4413 bits (241), Expect = 6.367e-22
Identity = 41/62 (66.13%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALP-IGPFAIKLNHRKILDSVFEI 61
            MARGRFREFYQCDFDIAGTYP M+ DAEV+++ +E+L+  P +G F IKL+HRK+LD+V +I
Sbjct:  592 MARGRFREFYQCDFDIAGTYPLMLADAEVISIGIEVLKEFPELGSFKIKLSHRKLLDAVLDI 653          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|552818699|ref|XP_005845244.1| (hypothetical protein CHLNCDRAFT_36479 [Chlorella variabilis] >gi|307104891|gb|EFN53142.1| hypothetical protein CHLNCDRAFT_36479 [Chlorella variabilis])

HSP 1 Score: 97.0561 bits (240), Expect = 6.549e-22
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEIS 62
            MARGRFREF+QCDFDIAG+YP+MVPDAEVL V VEIL  L +G + IKLNHR +LDS+ +I+
Sbjct:   99 MARGRFREFFQCDFDIAGSYPSMVPDAEVLKVLVEILDDLQLGEYEIKLNHRLLLDSMLDIA 160          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|1071045894|ref|XP_018278309.1| (histidyl-tRNA synthetase [Cutaneotrichosporon oleaginosus] >gi|831332252|gb|KLT41818.1| histidyl-tRNA synthetase [Cutaneotrichosporon oleaginosus])

HSP 1 Score: 97.0561 bits (240), Expect = 7.223e-22
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALPIGPFAIKLNHRKILDSVFEIS 62
            M++GR REFYQCDFDIAGTY  MVPDAE+L +  E L AL IG + IKLNHRKILD +FE++
Sbjct:  158 MSKGRMREFYQCDFDIAGTYDPMVPDAEILYILCEALNALEIGEYTIKLNHRKILDGIFELA 219          
BLAST of EWM29435.1 vs. NCBI_GenBank
Match: gi|698820391|ref|XP_009843224.1| (histidine-tRNA ligase [Aphanomyces astaci] >gi|574101675|gb|ETV67236.1| histidine-tRNA ligase [Aphanomyces astaci])

HSP 1 Score: 97.4413 bits (241), Expect = 7.625e-22
Identity = 40/62 (64.52%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 MARGRFREFYQCDFDIAGTYPTMVPDAEVLTVAVEILRALP-IGPFAIKLNHRKILDSVFEI 61
            +ARGRFREFYQCDFDIAG YPTM+ DAEV+++ +E+L+  P +GPF IKL+HRK+LD++ E+
Sbjct:  591 IARGRFREFYQCDFDIAGVYPTMLADAEVISIGIEVLQQFPELGPFKIKLSHRKLLDAILEL 652          
The following BLAST results are available for this feature:
BLAST of EWM29435.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111968|gb|EWM29435.1|6.789e-51100.00histidyl-trna synthetase [Nannochloropsis gaditana... [more]
gi|501754701|emb|CCG81927.1|3.601e-2272.13Histidyl-tRNA synthetase [Taphrina deformans PYCC ... [more]
gi|298714010|emb|CBJ27242.1|4.046e-2274.14Histidyl-tRNA Synthetase Similar to Histidine Ammo... [more]
gi|1183339864|gb|ORX68834.1|4.163e-2264.52histidyl-tRNA synthetase [Linderina pennispora][more]
gi|397596695|gb|EJK56825.1|4.493e-2268.85hypothetical protein THAOC_23204, partial [Thalass... [more]
gi|673030942|ref|XP_008869432.1|4.970e-2266.13histidine-tRNA ligase [Aphanomyces invadans] >gi|5... [more]
gi|1173957409|gb|OQS03938.1|6.367e-2266.13histidyl-tRNA synthetase, partial [Thraustotheca c... [more]
gi|552818699|ref|XP_005845244.1|6.549e-2270.97hypothetical protein CHLNCDRAFT_36479 [Chlorella v... [more]
gi|1071045894|ref|XP_018278309.1|7.223e-2267.74histidyl-tRNA synthetase [Cutaneotrichosporon olea... [more]
gi|698820391|ref|XP_009843224.1|7.625e-2264.52histidine-tRNA ligase [Aphanomyces astaci] >gi|574... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1239rna1239Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications