EWM30593.1, cds121 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|585113260|gb|EWM30593.1| (myb-like dna-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1316.98 bits (3407), Expect = 0.000e+0 Identity = 640/640 (100.00%), Postives = 640/640 (100.00%), Query Frame = 0
Query: 1 MTQSDSETRSYNTFDDQRDNLPSISTAAPSTHYNPSSSVHHASRAPRDSAPEGSWQTGREDIDSVKSDRSSTLVLSTAQKPHEKHRSSWLPFGADNLDSEGGSSHTSSLTHDGTMVQQTSEVQDYDEAEGASPVHAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAAQVQRDQMYLPRDRGPPHEIFSHQQGGCLPPSPKAVQSLQMQAQQQHGYFGLSNSAFPAQDVARSLQSLGGRDSGRTPGGLSTSESLASFSAPHSSQQHPPFPTRQYHAENKAGGIEEGFPSGHAWDPSWGQSTAAPSLDVSRSQQSHHQPIPAPGHYNLSNAQGHGGNAASFQNQAYYSSTGQGLGPMPNVLPPFPPGPQAMLNFSAASRPRGGYQGAQGHTGSEEGKVPSTSMYAMHSAGSGMGVHGGYHQGTGAITDIRCPSSGGAQRPPLPGGSNAGGEQHPSFLFQSMHSASMASPALHGCNESEGGHEIPRQWEGLRQEERMGSHVDEMQDTLYGSNRGQSISNAQAGEGPGRDPPGGTDGYTVV 640
MTQSDSETRSYNTFDDQRDNLPSISTAAPSTHYNPSSSVHHASRAPRDSAPEGSWQTGREDIDSVKSDRSSTLVLSTAQKPHEKHRSSWLPFGADNLDSEGGSSHTSSLTHDGTMVQQTSEVQDYDEAEGASPVHAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAAQVQRDQMYLPRDRGPPHEIFSHQQGGCLPPSPKAVQSLQMQAQQQHGYFGLSNSAFPAQDVARSLQSLGGRDSGRTPGGLSTSESLASFSAPHSSQQHPPFPTRQYHAENKAGGIEEGFPSGHAWDPSWGQSTAAPSLDVSRSQQSHHQPIPAPGHYNLSNAQGHGGNAASFQNQAYYSSTGQGLGPMPNVLPPFPPGPQAMLNFSAASRPRGGYQGAQGHTGSEEGKVPSTSMYAMHSAGSGMGVHGGYHQGTGAITDIRCPSSGGAQRPPLPGGSNAGGEQHPSFLFQSMHSASMASPALHGCNESEGGHEIPRQWEGLRQEERMGSHVDEMQDTLYGSNRGQSISNAQAGEGPGRDPPGGTDGYTVV
Sbjct: 1 MTQSDSETRSYNTFDDQRDNLPSISTAAPSTHYNPSSSVHHASRAPRDSAPEGSWQTGREDIDSVKSDRSSTLVLSTAQKPHEKHRSSWLPFGADNLDSEGGSSHTSSLTHDGTMVQQTSEVQDYDEAEGASPVHAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAAQVQRDQMYLPRDRGPPHEIFSHQQGGCLPPSPKAVQSLQMQAQQQHGYFGLSNSAFPAQDVARSLQSLGGRDSGRTPGGLSTSESLASFSAPHSSQQHPPFPTRQYHAENKAGGIEEGFPSGHAWDPSWGQSTAAPSLDVSRSQQSHHQPIPAPGHYNLSNAQGHGGNAASFQNQAYYSSTGQGLGPMPNVLPPFPPGPQAMLNFSAASRPRGGYQGAQGHTGSEEGKVPSTSMYAMHSAGSGMGVHGGYHQGTGAITDIRCPSSGGAQRPPLPGGSNAGGEQHPSFLFQSMHSASMASPALHGCNESEGGHEIPRQWEGLRQEERMGSHVDEMQDTLYGSNRGQSISNAQAGEGPGRDPPGGTDGYTVV 640
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|301111322|ref|XP_002904740.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262095070|gb|EEY53122.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 125.176 bits (313), Expect = 6.803e-27 Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG ++D + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMRDGKSIRVAS 225
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|301107508|ref|XP_002902836.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262097954|gb|EEY56006.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 116.316 bits (290), Expect = 1.052e-26 Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 0
Query: 135 HAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRS 259
+ +N KR W+P ED L ++ S GA DW+ IS LL R KQC ERW N+L P + ++AW EED++I N+W++IA LLPGRT N++KNRYY +RR R +K RS
Sbjct: 7 RVKTSSTSNNKLSKRQWSPEEDEALELAIQSTGANDWSAISRLLPGRCGKQCRERWVNHLSPAVNKEAWTEEEDELIFTTRDRIGNRWAEIARLLPGRTDNAIKNRYYSTMRRQGRQLRGNKSRS 131
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|568049858|gb|ETM46824.1| (hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 124.79 bits (312), Expect = 1.080e-26 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG +++ + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|568019417|gb|ETL93565.1| (hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 124.79 bits (312), Expect = 1.110e-26 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG +++ + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|570327842|gb|ETO75790.1| (hypothetical protein, variant [Phytophthora parasitica P1976]) HSP 1 Score: 124.79 bits (312), Expect = 1.152e-26 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG +++ + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|570985699|gb|ETP44917.1| (hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 124.79 bits (312), Expect = 1.163e-26 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG +++ + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|570951603|gb|ETP16860.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 124.79 bits (312), Expect = 1.174e-26 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG +++ + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|566024158|gb|ETI47069.1| (hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567961455|gb|ETK86997.1| hypothetical protein, variant [Phytophthora parasitica]) HSP 1 Score: 124.79 bits (312), Expect = 1.185e-26 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG +++ + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|675193265|ref|XP_008905517.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568094174|gb|ETN08956.1| hypothetical protein, variant [Phytophthora parasitica INRA-310]) HSP 1 Score: 124.79 bits (312), Expect = 1.229e-26 Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query: 148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
KR WT E+ L + V GAK W+ I+ L R KQC ERWHN+L P +R+DAW EED VI E H+ N+W++I+++LPGRT N++KNRYY +RR +R + KG +++ + R A+
Sbjct: 104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225 The following BLAST results are available for this feature:
BLAST of EWM30593.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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