EWM30593.1, cds121 (CDS) Nannochloropsis gaditana

Overview
NameEWM30593.1
Unique Namecds121
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:320795..320983 -
Alignment locationCM002455.1:320440..320619 -
Alignment locationCM002455.1:318584..320137 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30593.1
Productmyb-like dna-binding protein
Orig transcript idgnl|cribi|Naga_100033g47.8432.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:320795..320983 -
CM002455.1supercontigCM002455.1:320440..320619 -
CM002455.1supercontigCM002455.1:318584..320137 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|585113260|gb|EWM30593.1| (myb-like dna-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1316.98 bits (3407), Expect = 0.000e+0
Identity = 640/640 (100.00%), Postives = 640/640 (100.00%), Query Frame = 0
Query:    1 MTQSDSETRSYNTFDDQRDNLPSISTAAPSTHYNPSSSVHHASRAPRDSAPEGSWQTGREDIDSVKSDRSSTLVLSTAQKPHEKHRSSWLPFGADNLDSEGGSSHTSSLTHDGTMVQQTSEVQDYDEAEGASPVHAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAAQVQRDQMYLPRDRGPPHEIFSHQQGGCLPPSPKAVQSLQMQAQQQHGYFGLSNSAFPAQDVARSLQSLGGRDSGRTPGGLSTSESLASFSAPHSSQQHPPFPTRQYHAENKAGGIEEGFPSGHAWDPSWGQSTAAPSLDVSRSQQSHHQPIPAPGHYNLSNAQGHGGNAASFQNQAYYSSTGQGLGPMPNVLPPFPPGPQAMLNFSAASRPRGGYQGAQGHTGSEEGKVPSTSMYAMHSAGSGMGVHGGYHQGTGAITDIRCPSSGGAQRPPLPGGSNAGGEQHPSFLFQSMHSASMASPALHGCNESEGGHEIPRQWEGLRQEERMGSHVDEMQDTLYGSNRGQSISNAQAGEGPGRDPPGGTDGYTVV 640
            MTQSDSETRSYNTFDDQRDNLPSISTAAPSTHYNPSSSVHHASRAPRDSAPEGSWQTGREDIDSVKSDRSSTLVLSTAQKPHEKHRSSWLPFGADNLDSEGGSSHTSSLTHDGTMVQQTSEVQDYDEAEGASPVHAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAAQVQRDQMYLPRDRGPPHEIFSHQQGGCLPPSPKAVQSLQMQAQQQHGYFGLSNSAFPAQDVARSLQSLGGRDSGRTPGGLSTSESLASFSAPHSSQQHPPFPTRQYHAENKAGGIEEGFPSGHAWDPSWGQSTAAPSLDVSRSQQSHHQPIPAPGHYNLSNAQGHGGNAASFQNQAYYSSTGQGLGPMPNVLPPFPPGPQAMLNFSAASRPRGGYQGAQGHTGSEEGKVPSTSMYAMHSAGSGMGVHGGYHQGTGAITDIRCPSSGGAQRPPLPGGSNAGGEQHPSFLFQSMHSASMASPALHGCNESEGGHEIPRQWEGLRQEERMGSHVDEMQDTLYGSNRGQSISNAQAGEGPGRDPPGGTDGYTVV
Sbjct:    1 MTQSDSETRSYNTFDDQRDNLPSISTAAPSTHYNPSSSVHHASRAPRDSAPEGSWQTGREDIDSVKSDRSSTLVLSTAQKPHEKHRSSWLPFGADNLDSEGGSSHTSSLTHDGTMVQQTSEVQDYDEAEGASPVHAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAAQVQRDQMYLPRDRGPPHEIFSHQQGGCLPPSPKAVQSLQMQAQQQHGYFGLSNSAFPAQDVARSLQSLGGRDSGRTPGGLSTSESLASFSAPHSSQQHPPFPTRQYHAENKAGGIEEGFPSGHAWDPSWGQSTAAPSLDVSRSQQSHHQPIPAPGHYNLSNAQGHGGNAASFQNQAYYSSTGQGLGPMPNVLPPFPPGPQAMLNFSAASRPRGGYQGAQGHTGSEEGKVPSTSMYAMHSAGSGMGVHGGYHQGTGAITDIRCPSSGGAQRPPLPGGSNAGGEQHPSFLFQSMHSASMASPALHGCNESEGGHEIPRQWEGLRQEERMGSHVDEMQDTLYGSNRGQSISNAQAGEGPGRDPPGGTDGYTVV 640          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|301111322|ref|XP_002904740.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262095070|gb|EEY53122.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 125.176 bits (313), Expect = 6.803e-27
Identity = 57/123 (46.34%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  ++D +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMRDGKSIRVAS 225          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|301107508|ref|XP_002902836.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262097954|gb|EEY56006.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 116.316 bits (290), Expect = 1.052e-26
Identity = 55/125 (44.00%), Postives = 74/125 (59.20%), Query Frame = 0
Query:  135 HAGAAEAANKGFKKRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRS 259
                +  +N    KR W+P ED  L  ++ S GA DW+ IS LL  R  KQC ERW N+L P + ++AW  EED++I        N+W++IA LLPGRT N++KNRYY  +RR  R    +K RS
Sbjct:    7 RVKTSSTSNNKLSKRQWSPEEDEALELAIQSTGANDWSAISRLLPGRCGKQCRERWVNHLSPAVNKEAWTEEEDELIFTTRDRIGNRWAEIARLLPGRTDNAIKNRYYSTMRRQGRQLRGNKSRS 131          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|568049858|gb|ETM46824.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 124.79 bits (312), Expect = 1.080e-26
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  +++ +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|568019417|gb|ETL93565.1| (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 124.79 bits (312), Expect = 1.110e-26
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  +++ +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|570327842|gb|ETO75790.1| (hypothetical protein, variant [Phytophthora parasitica P1976])

HSP 1 Score: 124.79 bits (312), Expect = 1.152e-26
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  +++ +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|570985699|gb|ETP44917.1| (hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 124.79 bits (312), Expect = 1.163e-26
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  +++ +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|570951603|gb|ETP16860.1| (hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 124.79 bits (312), Expect = 1.174e-26
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  +++ +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|566024158|gb|ETI47069.1| (hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567961455|gb|ETK86997.1| hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 124.79 bits (312), Expect = 1.185e-26
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  +++ +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225          
BLAST of EWM30593.1 vs. NCBI_GenBank
Match: gi|675193265|ref|XP_008905517.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|568094174|gb|ETN08956.1| hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 124.79 bits (312), Expect = 1.229e-26
Identity = 56/123 (45.53%), Postives = 80/123 (65.04%), Query Frame = 0
Query:  148 KRAWTPSEDGILRESVSSNGAKDWNYISSLLTERSAKQCCERWHNYLKPDIRRDAWRPEEDKVILEFHRAFCNKWSKIAELLPGRTGNSVKNRYYCLLRRDKRNASVSKGRSLQDAEGDRAAA 270
            KR WT  E+  L + V   GAK W+ I+  L  R  KQC ERWHN+L P +R+DAW  EED VI E H+   N+W++I+++LPGRT N++KNRYY  +RR +R +   KG  +++ +  R A+
Sbjct:  104 KRPWTREENDKLMQLVKQYGAKRWSLIAMHLPGRVGKQCRERWHNHLNPSVRKDAWTAEEDYVIFECHKNVGNQWAEISKMLPGRTDNAIKNRYYSTMRRMQRQSIRKKG-PMREGKSIRVAS 225          
The following BLAST results are available for this feature:
BLAST of EWM30593.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113260|gb|EWM30593.1|0.000e+0100.00myb-like dna-binding protein [Nannochloropsis gadi... [more]
gi|301111322|ref|XP_002904740.1|6.803e-2746.34myb-like DNA-binding protein, putative [Phytophtho... [more]
gi|301107508|ref|XP_002902836.1|1.052e-2644.00myb-like DNA-binding protein, putative [Phytophtho... [more]
gi|568049858|gb|ETM46824.1|1.080e-2645.53hypothetical protein, variant [Phytophthora parasi... [more]
gi|568019417|gb|ETL93565.1|1.110e-2645.53hypothetical protein, variant [Phytophthora parasi... [more]
gi|570327842|gb|ETO75790.1|1.152e-2645.53hypothetical protein, variant [Phytophthora parasi... [more]
gi|570985699|gb|ETP44917.1|1.163e-2645.53hypothetical protein, variant [Phytophthora parasi... [more]
gi|570951603|gb|ETP16860.1|1.174e-2645.53hypothetical protein, variant [Phytophthora parasi... [more]
gi|566024158|gb|ETI47069.1|1.185e-2645.53hypothetical protein, variant [Phytophthora parasi... [more]
gi|675193265|ref|XP_008905517.1|1.229e-2645.53hypothetical protein, variant [Phytophthora parasi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna121rna121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications