EWM29495.1, cds1178 (CDS) Nannochloropsis gaditana

Overview
NameEWM29495.1
Unique Namecds1178
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1408448..1409194 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29495.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100287g4.6251.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1408448..1409194 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of EWM29495.1 vs. NCBI_GenBank
Match: gi|585112049|gb|EWM29495.1| (hypothetical protein Naga_100287g4 [Nannochloropsis gaditana])

HSP 1 Score: 501.901 bits (1291), Expect = 1.173e-179
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 
Query:    1 MHFAAERAHGLAMPASNSGTFRMSMASPPGANAAGAHTGPLANTSGYTHTNWQPSPGLGMPGAGPGDSWAPLHPACNDIRFPQMGTNGAGAMWQVPYPNYPPAQYFQAAPPQDEMPVPREVRMQSMPPGPDRLGALAAVSAEMGGNGQAKGPVGGQSTDAGDVDRGAKGEEGDRVKEGQGAGENGSRRVSIEGNLASSRKRPLHEEGEDIDEGGRHRESTQLCDDGSKGVGKMGRRDEASRKGHEKGE 248
            MHFAAERAHGLAMPASNSGTFRMSMASPPGANAAGAHTGPLANTSGYTHTNWQPSPGLGMPGAGPGDSWAPLHPACNDIRFPQMGTNGAGAMWQVPYPNYPPAQYFQAAPPQDEMPVPREVRMQSMPPGPDRLGALAAVSAEMGGNGQAKGPVGGQSTDAGDVDRGAKGEEGDRVKEGQGAGENGSRRVSIEGNLASSRKRPLHEEGEDIDEGGRHRESTQLCDDGSKGVGKMGRRDEASRKGHEKGE
Sbjct:    1 MHFAAERAHGLAMPASNSGTFRMSMASPPGANAAGAHTGPLANTSGYTHTNWQPSPGLGMPGAGPGDSWAPLHPACNDIRFPQMGTNGAGAMWQVPYPNYPPAQYFQAAPPQDEMPVPREVRMQSMPPGPDRLGALAAVSAEMGGNGQAKGPVGGQSTDAGDVDRGAKGEEGDRVKEGQGAGENGSRRVSIEGNLASSRKRPLHEEGEDIDEGGRHRESTQLCDDGSKGVGKMGRRDEASRKGHEKGE 248
[Close]
BLAST of EWM29495.1 vs. NCBI_GenBank
Match: gi|553190871|ref|XP_005855282.1| (fungal specific transcription factor domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293783|gb|EKU21083.1| fungal specific transcription factor domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 505.753 bits (1301), Expect = 3.968e-176
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 
Query:    1 MHFAAERAHGLAMPASNSGTFRMSMASPPGANAAGAHTGPLANTSGYTHTNWQPSPGLGMPGAGPGDSWAPLHPACNDIRFPQMGTNGAGAMWQVPYPNYPPAQYFQAAPPQDEMPVPREVRMQSMPPGPDRLGALAAVSAEMGGNGQAKGPVGGQSTDAGDVDRGAKGEEGDRVKEGQGAGENGSRRVSIEGNLASSRKRPLHEEGEDIDEGGRHRESTQLCDDGSKGVGKMGRRDEASRKGHEKGE 248
            MHFAAERAHGLAMPASNSGTFRMSMASPPGANAAGAHTGPLANTSGYTHTNWQPSPGLGMPGAGPGDSWAPLHPACNDIRFPQMGTNGAGAMWQVPYPNYPPAQYFQAAPPQDEMPVPREVRMQSMPPGPDRLGALAAVSAEMGGNGQAKGPVGGQSTDAGDVDRGAKGEEGDRVKEGQGAGENGSRRVSIEGNLASSRKRPLHEEGEDIDEGGRHRESTQLCDDGSKGVGKMGRRDEASRKGHEKGE
Sbjct:  334 MHFAAERAHGLAMPASNSGTFRMSMASPPGANAAGAHTGPLANTSGYTHTNWQPSPGLGMPGAGPGDSWAPLHPACNDIRFPQMGTNGAGAMWQVPYPNYPPAQYFQAAPPQDEMPVPREVRMQSMPPGPDRLGALAAVSAEMGGNGQAKGPVGGQSTDAGDVDRGAKGEEGDRVKEGQGAGENGSRRVSIEGNLASSRKRPLHEEGEDIDEGGRHRESTQLCDDGSKGVGKMGRRDEASRKGHEKGE 581
The following BLAST results are available for this feature:
BLAST of EWM29495.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112049|gb|EWM29495.1|1.173e-179100.00hypothetical protein Naga_100287g4 [Nannochloropsi... [more]
gi|553190871|ref|XP_005855282.1|3.968e-176100.00fungal specific transcription factor domain-contai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1179rna1179Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications