EWM30574.1, cds115 (CDS) Nannochloropsis gaditana

Overview
NameEWM30574.1
Unique Namecds115
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:307602..308041 -
Alignment locationCM002455.1:307287..307498 -
Alignment locationCM002455.1:307167..307198 -
Alignment locationCM002455.1:306965..307070 -
Alignment locationCM002455.1:306558..306922 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30574.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100033g41.8413.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:307602..308041 -
CM002455.1supercontigCM002455.1:307287..307498 -
CM002455.1supercontigCM002455.1:307167..307198 -
CM002455.1supercontigCM002455.1:306965..307070 -
CM002455.1supercontigCM002455.1:306558..306922 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|585113241|gb|EWM30574.1| (hypothetical protein Naga_100033g41 [Nannochloropsis gaditana])

HSP 1 Score: 801.201 bits (2068), Expect = 0.000e+0
Identity = 384/384 (100.00%), Postives = 384/384 (100.00%), Query Frame = 0
Query:    1 MGHNRYSGACARIQQLTARNTALAVCIIGLMALVVRVHHQRSGKSMSIANWSSMSAGPSSLGSSASCYRDVKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLRRRDHGWARLLNQFAAKHELQVVVPPFDETWKSWMIRKPSVHCPGTTPVSAVTRRLIAVDNIRVFACSLSRQMSKRSAGRDLIDASNRYELSHFRCPPSQHVSPQLYLRVVPHVEGNESARHCIFDRGEGRRGREIFGLSSAAHAFAVFFQCRLFALYIAILSGGSDTASFCTERAT 384
            MGHNRYSGACARIQQLTARNTALAVCIIGLMALVVRVHHQRSGKSMSIANWSSMSAGPSSLGSSASCYRDVKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLRRRDHGWARLLNQFAAKHELQVVVPPFDETWKSWMIRKPSVHCPGTTPVSAVTRRLIAVDNIRVFACSLSRQMSKRSAGRDLIDASNRYELSHFRCPPSQHVSPQLYLRVVPHVEGNESARHCIFDRGEGRRGREIFGLSSAAHAFAVFFQCRLFALYIAILSGGSDTASFCTERAT
Sbjct:    1 MGHNRYSGACARIQQLTARNTALAVCIIGLMALVVRVHHQRSGKSMSIANWSSMSAGPSSLGSSASCYRDVKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLRRRDHGWARLLNQFAAKHELQVVVPPFDETWKSWMIRKPSVHCPGTTPVSAVTRRLIAVDNIRVFACSLSRQMSKRSAGRDLIDASNRYELSHFRCPPSQHVSPQLYLRVVPHVEGNESARHCIFDRGEGRRGREIFGLSSAAHAFAVFFQCRLFALYIAILSGGSDTASFCTERAT 384          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|159477315|ref|XP_001696756.1| (O-methyltransferase [Chlamydomonas reinhardtii] >gi|158275085|gb|EDP00864.1| O-methyltransferase [Chlamydomonas reinhardtii])

HSP 1 Score: 133.65 bits (335), Expect = 6.603e-33
Identity = 75/199 (37.69%), Postives = 98/199 (49.25%), Query Frame = 0
Query:   79 NRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLRR------------------RDHGWARLLN-------------QFAAKHELQVVVPPFDETWKSWMIRKP 246
             R+ +G +LE  G+ VG+ELGVQRG +   TL  W       LVD+W   PNY D AN  +  Q QL +EA G L  +  +     FL+  T DA   I N  VD++YVDARHD+CGV+EDIELYWPKL+                       WA+ +N              F  +  L V V   D  W +W++ KP
Sbjct:   82 TRNELGYMLETMGLRVGVELGVQRGHFAAHTLKTWPSATRYYLVDIWQHQPNYEDFANVDNAKQDQLFKEAQGNLAAYTGKTV---FLRNFTSDAVKRI-NEMVDYIYVDARHDYCGVLEDIELYWPKLKSGGIMAGHDYLDAPQVQAISQQNWAKCMNGTVHQGAVKGAVDDFFKRIGLPVHVTYQDAPWSTWVVLKP 276          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|873241668|emb|CEL92384.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 136.346 bits (342), Expect = 2.779e-31
Identity = 68/153 (44.44%), Postives = 90/153 (58.82%), Query Frame = 0
Query:   73 PLPFVENRDAIGRVLEEEGMAVGIELGVQRGL-----------------YTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLR 208
            PLP ++ R  +G VLE E   VG+ELGVQRG                  +  + LSRW KC+   LVD+W    NY+D AN   + Q   + EA  +L  +  +     +++MLT DAA  IP++SVDFVY+DARHD+CGV ED+ LYWPKLR
Sbjct:   15 PLPLLDTRADLGDVLERENKTVGVELGVQRGTVRLSDCTDVTPALVSGEFAAEVLSRWPKCRKYYLVDLWTHQDNYNDTANVATDAQEAYMNEAKDKLRHWQDKTV---WMRMLTSDAAREIPDNSVDFVYIDARHDYCGVSEDLSLYWPKLR 164          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|470376710|ref|XP_004333310.1| (hypothetical protein ACA1_189630 [Acanthamoeba castellanii str. Neff] >gi|440790008|gb|ELR11297.1| hypothetical protein ACA1_189630 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 125.561 bits (314), Expect = 9.266e-30
Identity = 61/136 (44.85%), Postives = 85/136 (62.50%), Query Frame = 0
Query:   73 PLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLR 208
            PL  + +R+ +G + E   +  G ELGVQ+GL++ +TLSRW  C+   LVDVW    +Y D AN  D  Q     E    L+++A      EFL+M T +AA  +P+ S+DF+YVDARHD+CGV ED+  +WPKLR
Sbjct:   85 PLIPLGSREQLGCLAELYELKTGAELGVQQGLFSNETLSRWPSCEKYILVDVWKHQESYDDGANVEDSDQEARFEETKRNLERYAH---ITEFLRMYTTEAAKLVPDDSLDFIYVDARHDYCGVREDLRTWWPKLR 217          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|219117355|ref|XP_002179472.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409363|gb|EEC49295.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 117.087 bits (292), Expect = 1.493e-26
Identity = 64/195 (32.82%), Postives = 99/195 (50.77%), Query Frame = 0
Query:   19 RNTALAVCIIGLMALVVRVHHQRSGKSMSIANWSSMSAGPSSLGSSASC-----YRDVKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLR 208
            R + + +  + L  L V V        ++   +S +      LG+   C     YR    +P + ++  +G +++  G   G E+GVQ G++ ++ L  WT C+   LVD+W    NY D AN   + Q  L +    RL  +    T   F +ML+  AA  IP+ S+DF Y+DARHD+CGV ED+  Y+PKLR
Sbjct:   16 RGSTIILFTLSLATLTVAV--------LTFLVFSEVQTQFEPLGTHTPCEIGVLYRGPAGIPALRSKADLGPLMQARGFTDGAEVGVQSGVHAQQILQAWTSCQKFHLVDLWGHQENYKDSANVVQDKQDSLFQSTQNRLQPWRHITT---FHRMLSTQAAQRIPDQSLDFFYIDARHDYCGVTEDLRAYYPKLR 199          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|397598920|gb|EJK57311.1| (hypothetical protein THAOC_22660 [Thalassiosira oceanica])

HSP 1 Score: 115.546 bits (288), Expect = 2.218e-26
Identity = 52/139 (37.41%), Postives = 84/139 (60.43%), Query Frame = 0
Query:   71 VKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLRR 209
             + +P  ++R  +G+VLE EG+ +G ELGVQ+  Y+   LS W   +   LVD+WA+L NY+D ANK    Q ++  EA   ++   +  + +   +  T +      +   DF+YVDARHDF GV++D++L+WPKL++
Sbjct:   24 TRGVPTFKSRHDLGKVLEAEGLHIGAELGVQKAHYSNSLLSDWASNREYHLVDIWAKLENYNDHANKEQSEQDRIYAEA---MENVKSWKSNIHVCRNFTTNCVRNYEDDYFDFIYVDARHDFKGVLQDLQLWWPKLKQ 159          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|219122177|ref|XP_002181428.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407414|gb|EEC47351.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 114.39 bits (285), Expect = 5.559e-25
Identity = 61/165 (36.97%), Postives = 86/165 (52.12%), Query Frame = 0
Query:   45 SMSIANWSSMSAGPSSLGSSASC-YRDVKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLR 208
            S     W+ + A  + L       YR    +P +  R  +G +++  G   G E+GVQ G + ++ L  WT C+   LVD+W    NY D AN     Q +L +     L  +      + F +ML+  AA  IP+ S+DFVYVDARHD+CGV EDI  Y+PKLR
Sbjct:   35 SQETFGWTEIPAMATFLPCETDVVYRGPAGIPALRTRADLGPLMQARGFTHGAEVGVQSGSHAKQILQAWTSCERFHLVDLWGHQENYKDVANFHQSKQDELFQATQNLLQPWR---EIVTFHRMLSTQAARQIPDQSLDFVYVDARHDYCGVTEDIRAYYPKLR 196          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|552832430|ref|XP_005848345.1| (hypothetical protein CHLNCDRAFT_145050 [Chlorella variabilis] >gi|307108002|gb|EFN56243.1| hypothetical protein CHLNCDRAFT_145050 [Chlorella variabilis])

HSP 1 Score: 115.161 bits (287), Expect = 2.879e-24
Identity = 89/292 (30.48%), Postives = 126/292 (43.15%), Query Frame = 0
Query:    2 GHNRYSGACARIQQLTARNTALAVCIIGLMALVVRVHHQRSGKSMSIANWSSMSAGPSSLGSS-------------ASCYRDVKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLRR---------------------RDHGWARLL-------------NQFAAKHELQVVVPPFDETWKSWMIRKP 246
            G++RYS +   +      N+A    + GL A +      R G     A  +   AG S L +              +S     K L  ++ R  IG VLE EG+  G ELGVQ G + ++TL  W  C    L        NY+D AN     Q +  +    RL  ++ R     F++  T  AA  IP++S+D+VYVDARHD+CGV ED+  YWPKLR                      R   W+  +             N+FA +H L ++V   +  + SWM RKP
Sbjct:  382 GYHRYSASWTSLG-----NSAGIFNMQGLQAAMCAAPRARPGWQQPAAQQAGTDAGASQLPAGKLSAATPSSSSSSSSSSSMAKVLLPIKARADIGAVLEREGLQTGAELGVQAGFFADQTLKVWKSCTKYYLE-------NYNDVANVDAAEQEKKYQATRQRLAPYSDRTV---FIRNYTTHAATQIPDNSLDYVYVDARHDYCGVHEDLAAYWPKLRSGGILAGHDYLDAPEVAAKPSPRKQDWSLCMDGSRHQGAVKGAVNEFAQQHGLTLLVTYNEPNFPSWMARKP 658          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|219122175|ref|XP_002181427.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407413|gb|EEC47350.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 105.916 bits (263), Expect = 2.432e-22
Identity = 56/141 (39.72%), Postives = 77/141 (54.61%), Query Frame = 0
Query:   68 YRDVKPLPFVENRDAIGRVLEEEGMAVGIELGVQRGLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAARGTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLR 208
            YR    +P +  R  +G +++  G   G E+GVQ G + ++ L  W  C+   LVD+W    N    AN     Q  L + A   L  +  R  T  F +ML+  AA  IP+ S+DFVYVDARHD+CG  EDI+ Y+PKLR
Sbjct:   70 YRGPAGIPALRTRADLGALMQARGFTHGAEVGVQSGSHAKQILQAWISCERFHLVDLWGHQENCKGSANFDQTKQDALFQGAQDLLQPW--RNIT-TFHRMLSTQAAQQIPDQSLDFVYVDARHDYCGATEDIQAYYPKLR 207          
BLAST of EWM30574.1 vs. NCBI_GenBank
Match: gi|569343254|gb|ETO03776.1| (hypothetical protein RFI_33626, partial [Reticulomyxa filosa])

HSP 1 Score: 93.9745 bits (232), Expect = 3.057e-19
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 0
Query:  103 GLYTEKTLSRWTKCKHMTLVDVWAQLPNYSDQANKPDEVQAQLLREAHGRLDKFAAR---GTTLEFLQMLTKDAAPTIPNSSVDFVYVDARHDFCGVMEDIELYWPKLR 208
            G ++ + L RWT C+   L+D W    N+SD AN     Q          L  FA+R      L F +  +KDAAP I + SVDF+Y+DARHD+  ++ED+ LYWPKL+
Sbjct:    8 GGFSNEILKRWTNCEKYILIDPWIYQSNWSDWANVNQRSQDHNFESTKTLLKPFASRFPVPVELIFYREFSKDAAPLIADESVDFIYLDARHDYSSIVEDLHLYWPKLK 116          
The following BLAST results are available for this feature:
BLAST of EWM30574.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113241|gb|EWM30574.1|0.000e+0100.00hypothetical protein Naga_100033g41 [Nannochlorops... [more]
gi|159477315|ref|XP_001696756.1|6.603e-3337.69O-methyltransferase [Chlamydomonas reinhardtii] >g... [more]
gi|873241668|emb|CEL92384.1|2.779e-3144.44unnamed protein product [Vitrella brassicaformis C... [more]
gi|470376710|ref|XP_004333310.1|9.266e-3044.85hypothetical protein ACA1_189630 [Acanthamoeba cas... [more]
gi|219117355|ref|XP_002179472.1|1.493e-2632.82predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397598920|gb|EJK57311.1|2.218e-2637.41hypothetical protein THAOC_22660 [Thalassiosira oc... [more]
gi|219122177|ref|XP_002181428.1|5.559e-2536.97predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|552832430|ref|XP_005848345.1|2.879e-2430.48hypothetical protein CHLNCDRAFT_145050 [Chlorella ... [more]
gi|219122175|ref|XP_002181427.1|2.432e-2239.72predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|569343254|gb|ETO03776.1|3.057e-1941.28hypothetical protein RFI_33626, partial [Reticulom... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna115rna115Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications