EWM30575.1, cds114 (CDS) Nannochloropsis gaditana

Overview
NameEWM30575.1
Unique Namecds114
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:305070..305150 +
Alignment locationCM002455.1:305264..305395 +
Alignment locationCM002455.1:305490..306488 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30575.1
Productgalactosyl transferase gma12 mnn10 family protein
Orig transcript idgnl|cribi|Naga_100033g40.8414.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:305070..305150 +
CM002455.1supercontigCM002455.1:305264..305395 +
CM002455.1supercontigCM002455.1:305490..306488 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016757transferase activity, transferring glycosyl groups
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005794Golgi apparatus
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR008630Glyco_trans_34
IPR029044Nucleotide-diphossugar_trans
Homology
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|585113242|gb|EWM30575.1| (galactosyl transferase gma12 mnn10 family protein [Nannochloropsis gaditana])

HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0
Identity = 403/403 (100.00%), Postives = 403/403 (100.00%), Query Frame = 0
Query:    1 MCMFVLSHGILPSILFLSPFFPARLGNHSMNSPYPFRWLSALIKMRRRLCVKYGSVVLITAITMGLLWNYHATLAYRTMSFSAADGRNYRSWNGTFQFLRPQWQTFAGFIDRCAEFDGSEHDPNEKVRVKRIYSIFASPGPSFDAATTALNDYAHVAEENREQPPNRRATFSCLPWIHADAPVLMHGPPRIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKTSTKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITNEKMSNIWWEQAAIMRLLQSEGIRNHVKYSPQMHFNSYVTSQGHVKMDENGGRGPFIVHFAGLGPAKWDMLLDVYAQRRNVENQDMTKE 403
            MCMFVLSHGILPSILFLSPFFPARLGNHSMNSPYPFRWLSALIKMRRRLCVKYGSVVLITAITMGLLWNYHATLAYRTMSFSAADGRNYRSWNGTFQFLRPQWQTFAGFIDRCAEFDGSEHDPNEKVRVKRIYSIFASPGPSFDAATTALNDYAHVAEENREQPPNRRATFSCLPWIHADAPVLMHGPPRIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKTSTKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITNEKMSNIWWEQAAIMRLLQSEGIRNHVKYSPQMHFNSYVTSQGHVKMDENGGRGPFIVHFAGLGPAKWDMLLDVYAQRRNVENQDMTKE
Sbjct:    1 MCMFVLSHGILPSILFLSPFFPARLGNHSMNSPYPFRWLSALIKMRRRLCVKYGSVVLITAITMGLLWNYHATLAYRTMSFSAADGRNYRSWNGTFQFLRPQWQTFAGFIDRCAEFDGSEHDPNEKVRVKRIYSIFASPGPSFDAATTALNDYAHVAEENREQPPNRRATFSCLPWIHADAPVLMHGPPRIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKTSTKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITNEKMSNIWWEQAAIMRLLQSEGIRNHVKYSPQMHFNSYVTSQGHVKMDENGGRGPFIVHFAGLGPAKWDMLLDVYAQRRNVENQDMTKE 403          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|545354271|ref|XP_005642970.1| (hypothetical protein COCSUDRAFT_54970 [Coccomyxa subellipsoidea C-169] >gi|384244929|gb|EIE18426.1| hypothetical protein COCSUDRAFT_54970 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 108.612 bits (270), Expect = 1.447e-23
Identity = 66/195 (33.85%), Postives = 103/195 (52.82%), Query Frame = 0
Query:  190 RIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKTSTKRAAAWSKLPGILSLLD--QYDWVVSLDADTVIYDHSIRLEEFL--DPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWT---ITNEKMSNIWWEQAAIMRLLQ-SEGIRNHVKYSPQMHFNSYVTSQGHVKMDENGGRGPFIVHFAG 376
            R AI ++ T   V  +  + ++ ++  Y   H Y L I      +R  AWSK+  + S +   QYDW++ +DAD +I +  I L+EF+      D++V  D NG+N+GVF LR+S  +  LL EA+    ++N  + ++WWEQ + +++   SE +R      PQ  FNSY T         +   G FIVHF G
Sbjct:   31 RFAIVSVITGP-VPKAYYAQAVTNRALYATRHSYTLRIFPTIDERRPTAWSKVLAMKSTIRSAQYDWILWMDADALITNFEISLDEFVPYGDEIDMLVATDCNGLNTGVFLLRSSPSALELLEEAYNGVHVSNNTIDHVWWEQMSFVQMYAASEDVRKRTYVLPQKSFNSYPTQHDCSGKSHSWSEGDFIVHFPG 224          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|612389881|ref|XP_007510461.1| (predicted protein [Bathycoccus prasinos] >gi|412990622|emb|CCO17994.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 102.064 bits (253), Expect = 9.901e-20
Identity = 72/228 (31.58%), Postives = 106/228 (46.49%), Query Frame = 0
Query:  192 AIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKT-STKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITNEKMSN--IWWEQAAIMRLLQS-----------------EGIRNHVKYSPQMHFNS----YVTSQGHVKMDENGGRGPFIVHFAGL-GPAKWDMLLDVYAQRRN 394
              A L   D       + S+ +K+ Y   H YDL  + +T  T R  AWSK+  +   L +Y W++ LD DT+I +  IRLE+  D ++D ++G D NG+NSGV+F++N+ W +  LTE W   +    N    +EQ A   L Q+                 E +R   K   Q  FNS    YV              G F+VHFAG+ G A+  +    Y + +N
Sbjct:  465 GFAILCICDAHTADICAASVANKRAYAKIHEYDLIFVTETLDTTRPMAWSKILAVQRYLPRYKWLLFLDIDTLIMNPDIRLEDIADDNYDQVIGADHNGINSGVWFVKNTRWMRWFLTELWAQEDLVRGNYVFHYEQRAFHHLFQTEVWSNNVGTSKKPYEGAEDVRKRSKVVNQCVFNSLLPWYVN-------------GDFVVHFAGMKGVAQCYLFWQYYEKAKN 679          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|1150749675|ref|XP_020248963.1| (probable alpha-1,6-mannosyltransferase MNN10 isoform X1 [Asparagus officinalis] >gi|1141975704|gb|ONK56930.1| uncharacterized protein A4U43_C10F14810 [Asparagus officinalis])

HSP 1 Score: 95.1301 bits (235), Expect = 3.778e-19
Identity = 72/192 (37.50%), Postives = 100/192 (52.08%), Query Frame = 0
Query:  213 DKKKYCDHHGYDLHIIRKTSTK-RAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFL-------DPH--HDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITN--EKMSNIWWEQAAIMRL---LQSEGIRNHVKYSP-QMHFNSYV---TSQGHVKMDENG--------GRGPFIVHFAGL 377
            +K+ Y +  GYD    R    + R   WSK+  +   LD+YDWV   DADT++ + +I LE  L       D H  HDL+V  D NG+NSGVFF+R S WSK  L + W  T+  +  S    + AA+  L   L SE +R+HV+ SP Q  FNSYV   T +   ++  +          +G F+VH AG 
Sbjct:    7 NKRSYAERMGYDFLDARSLVDRSRPPNWSKILAVRHYLDRYDWVFWNDADTLVTNSNISLESILKAAIGHLDLHASHDLVVTEDTNGINSGVFFIRRSNWSKDFLDKWWNQTSFIQFGSTKSGDNAAMKHLVDGLTSEELRDHVRISPMQCLFNSYVWNLTWKSAYRLITSPQTIWKGAYSKGDFLVHLAGF 198          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|303274943|ref|XP_003056782.1| (hypothetical protein MICPUCDRAFT_56194 [Micromonas pusilla CCMP1545] >gi|226461134|gb|EEH58427.1| hypothetical protein MICPUCDRAFT_56194 [Micromonas pusilla CCMP1545])

HSP 1 Score: 97.0561 bits (240), Expect = 2.330e-18
Identity = 73/252 (28.97%), Postives = 112/252 (44.44%), Query Frame = 0
Query:  182 PVLMHGPPRIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKTS-TKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITNEKMSN--IWWEQAAIMRLLQS------------------EGIRNHVKYSPQMHFNS----YVTSQGHVKMDENGGRGPFIVHFAGLGPAKWDMLL-----DVYAQRRNVENQDMTKE 403
            P  +H  P    A L+  D         S  +K++Y   HGYDL ++ + +   R AAWSK+  +   L +Y+WV+ +D DT+I + +++LE+  D   D ++  D NG+NSGV+ ++NS W    L E W  T+         +EQ A   L Q+                    +R H K   Q  FNS    YVT             G F+VH AGL    W+ L+     D+  +   +   D ++E
Sbjct:  200 PEDLHHTPGAKYAILTLCDSNTGYICVASAANKRRYAAKHGYDLIVVTEVADASRPAAWSKILEVRKHLPKYEWVLFIDVDTLIMNPNVKLEDIADDSVDQVIAADHNGINSGVWLVKNSRWMMWFLDELWAQTDLVTGPYLFHYEQRAFHHLFQTVPWTKQKSVKGKLPYPKAAEVRAHSKIVNQCVFNSLLPWYVT-------------GDFVVHLAGLK-GVWECLIFWHYFDISQENSGMRITDWSRE 437          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|303282617|ref|XP_003060600.1| (hypothetical protein MICPUCDRAFT_59967 [Micromonas pusilla CCMP1545] >gi|226458071|gb|EEH55369.1| hypothetical protein MICPUCDRAFT_59967 [Micromonas pusilla CCMP1545])

HSP 1 Score: 95.5153 bits (236), Expect = 5.159e-18
Identity = 71/216 (32.87%), Postives = 106/216 (49.07%), Query Frame = 0
Query:  187 GPPRIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRK-TSTKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWT----ITNEKMSNIWWEQAAIMRLLQSEGIRNHVKYSPQMHFNS------YVTSQGHVKMDENGGRGPFIVHFAGL-GPAKWDMLLDVYA 390
            G P++ I +L   D+  ++  S S+ +K+ Y DHHGYD+ +        R  +WSKL  +   L  YD++  +D DTVI +  ++LE+ +D  +D I+  D NG+N GV+ +RN+ WS   L E W     ++        +EQ A+  L QS   R  VK       N+       V S     +     +G F+VH AGL G AK  M    YA
Sbjct:  157 GKPKVGIVSL--CDHNVDAICSASVANKQAYADHHGYDVIVDGDLIDESRPTSWSKLLVMRKYLPYYDFLFYVDVDTVITNVDVKLEDVVDYGYDQILAADKNGLNCGVWLIRNTPWSLWFLDEMWAQEQLVSPRTFVLFKFEQRAMHFLYQSRIWRTSVKGDAYKGANTIRARTKVVNSCVFNSLPAWYVKGDFLVHLAGLKGVAKCMMFRHYYA 370          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|563780368|ref|WP_023792378.1| (galactosyl transferase GMA12/MNN10 family [Candidatus Babela massiliensis] >gi|563405722|emb|CDK30750.1| galactosyl transferase GMA12/MNN10 family [Candidatus Babela massiliensis])

HSP 1 Score: 91.6633 bits (226), Expect = 1.035e-17
Identity = 56/193 (29.02%), Postives = 97/193 (50.26%), Query Frame = 0
Query:  191 IAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIR-KTSTKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDG-NGVNSGVFFLRNSTWSKVLLTEAWTITNEKMSNI--WWEQAAIMRLLQSE-GIRNHVKYSPQMHFNSYVTSQGHVKMDENGGRGPFIVHFAGLG 378
            + IA +   D         + I+K+ Y + HGYD  +   +  T RAA W K+  +   L  YDW+  LD+D +I + SI+LE  +D  +D I   D    +NSG F ++N+ WS+  L + W     + + +   ++  A++++ Q    ++ H+K  PQ   +SY+   G   +D     G F++HFA + 
Sbjct:   25 LKIALIGVHDERYEHIGKYAHINKRAYAEKHGYDYFLYNYRLDTGRAAYWDKVVALQRHLSDYDWLFWLDSDALIMNDSIKLESIIDEDYDFITTRDCLRSMNSGQFLIKNTQWSRNFL-KLWYSPKYEHTQVAPGFDNGALIQIYQEHPKVKEHIKIVPQRLLSSYLQCPGWFNIDGEYQPGDFVIHFAAVN 216          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|743776706|ref|XP_010918766.1| (PREDICTED: probable alpha-1,6-mannosyltransferase MNN10 [Elaeis guineensis])

HSP 1 Score: 93.2041 bits (230), Expect = 1.075e-17
Identity = 80/238 (33.61%), Postives = 107/238 (44.96%), Query Frame = 0
Query:  189 PRIAIATLSTADYVN----------NSAVSLSLIDKKKYCDHHGYDLHIIRK-TSTKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLD---------PHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITN--EKMSNIWWEQAAIMRLLQS---EGIRNHVKYSP-QMHFNSY-----------VTSQGHVKMDENGGRGPFIVHFAGLG-PAKW-DMLLD 387
            PRIAI + S  + V              +     +K+ Y +  GYD    R+     R  +WSK+  + SLL  YDWV   DADT+I +  I LE  L+            DL+V  D NGVN+GVFF R S WS+  L   W  T+     S I  +  A+  L+ S   + ++NHV+ SP Q  FNSY           + S            G F+VH AGL    KW D +LD
Sbjct:   70 PRIAIVSFSEEERVAAGGGVGRRSFRGVMEAVRGNKRAYAERMGYDFFDARRLVDPSRPPSWSKILAVRSLLPYYDWVFWNDADTIITNPDISLENILNAAIGHSDFQASPDLVVTEDFNGVNAGVFFFRRSKWSEKFLDTWWNQTSFVRFGSTISGDNTALKHLISSLPPKELKNHVRTSPMQCLFNSYPWLPTWKNAYRLLSSPLKTWKGAYSNGDFMVHLAGLDEKKKWADRILD 307          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|612399109|ref|XP_007515074.1| (Subunit of Golgi mannosyltransferase complex (ISS) [Bathycoccus prasinos] >gi|412986888|emb|CCO15314.1| Subunit of Golgi mannosyltransferase complex (ISS) [Bathycoccus prasinos])

HSP 1 Score: 93.2041 bits (230), Expect = 4.564e-17
Identity = 61/210 (29.05%), Postives = 103/210 (49.05%), Query Frame = 0
Query:  189 PRIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRK-TSTKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWTITN-------------EK-------MSNIWWEQAAIMRLLQSEGIRNHVKYSPQMHFNSYVTSQGHVKMDENGGRGPFIVHFAGL 377
            P++ I  +   +   +S  + S+ +K+ Y D HGYD+    K   + R A+WSKL  +   L +YD+++ LD DTVI +  ++LE+ +D  +D I+  D NG+N GV+ +RN+ WS   L E W+ +              E+        +NIW ++    +  ++  +R   K      FNS       +   E+G    F++H AGL
Sbjct:  218 PKVGIIVICDGNV--HSICASSVANKQAYADRHGYDMIYDEKIVDSSRPASWSKLLAMRKYLPKYDFLLYLDVDTVIVNFDVQLEDIVDYEYDQILAADRNGLNCGVWMIRNTEWSLWFLDEMWSQSQLVGAAPWQMLFHFEQRAFHYLYQTNIWRQKVGGEQFEKANTVRARTKVVNACVFNS------QLAFYEDGD---FLIHLAGL 416          
BLAST of EWM30575.1 vs. NCBI_GenBank
Match: gi|255085164|ref|XP_002505013.1| (hypothetical protein MICPUN_62693 [Micromonas commoda] >gi|226520282|gb|ACO66271.1| hypothetical protein MICPUN_62693 [Micromonas commoda])

HSP 1 Score: 92.0485 bits (227), Expect = 9.867e-17
Identity = 62/200 (31.00%), Postives = 99/200 (49.50%), Query Frame = 0
Query:  189 PRIAIATLSTADYVNNSAVSLSLIDKKKYCDHHGYDLHIIRKT-STKRAAAWSKLPGILSLLDQYDWVVSLDADTVIYDHSIRLEEFLDPHHDLIVGLDGNGVNSGVFFLRNSTWSKVLLTEAWT----ITNEKMSNIWWEQAAIMRLLQSEGIRNHVKYSPQMHFNS------YVTSQGHVKMDENGGRGPFIVHFAGL 377
            P++ I +L   D+  ++  + S+ +K+ Y D HGYD+ +  +     R  +WSKL  +   L  YD++  +D DT+I +  ++LE+ +D  +D I+  D NG+N GV+ +RN+ WS   L E W     +         +EQ A+  L QS   R  VK  P    N+       V S     +     +G F+VH AGL
Sbjct:  196 PKVGIVSL--CDHNVDAICAASVANKQAYADRHGYDVIVDSEIIDESRPTSWSKLLAMRKYLPYYDYLFYVDVDTIIANVDVKLEDIVDYGYDQILAADRNGLNCGVWLIRNTPWSLWFLDEMWAQEQLVAPSTRVLFHYEQRAMHYLYQSRVWRRAVKGEPYKGANTIRARTKVVNSCVFNSLPAWYVKGDFVVHLAGL 393          
The following BLAST results are available for this feature:
BLAST of EWM30575.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113242|gb|EWM30575.1|0.000e+0100.00galactosyl transferase gma12 mnn10 family protein ... [more]
gi|545354271|ref|XP_005642970.1|1.447e-2333.85hypothetical protein COCSUDRAFT_54970 [Coccomyxa s... [more]
gi|612389881|ref|XP_007510461.1|9.901e-2031.58predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|1150749675|ref|XP_020248963.1|3.778e-1937.50probable alpha-1,6-mannosyltransferase MNN10 isofo... [more]
gi|303274943|ref|XP_003056782.1|2.330e-1828.97hypothetical protein MICPUCDRAFT_56194 [Micromonas... [more]
gi|303282617|ref|XP_003060600.1|5.159e-1832.87hypothetical protein MICPUCDRAFT_59967 [Micromonas... [more]
gi|563780368|ref|WP_023792378.1|1.035e-1729.02galactosyl transferase GMA12/MNN10 family [Candida... [more]
gi|743776706|ref|XP_010918766.1|1.075e-1733.61PREDICTED: probable alpha-1,6-mannosyltransferase ... [more]
gi|612399109|ref|XP_007515074.1|4.564e-1729.05Subunit of Golgi mannosyltransferase complex (ISS)... [more]
gi|255085164|ref|XP_002505013.1|9.867e-1731.00hypothetical protein MICPUN_62693 [Micromonas comm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna114rna114Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications