EWM29558.1, cds1133 (CDS) Nannochloropsis gaditana

Overview
NameEWM29558.1
Unique Namecds1133
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1272669..1272843 +
Alignment locationCM002456.1:1273076..1273341 +
Alignment locationCM002456.1:1273550..1274047 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29558.1
Productperoxisomal -trans-enoyl- isomerase
Orig transcript idgnl|cribi|Naga_100006g32.8647.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1272669..1272843 +
CM002456.1supercontigCM002456.1:1273076..1273341 +
CM002456.1supercontigCM002456.1:1273550..1274047 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001753Crotonase_core_superfam
IPR029045ClpP/crotonase-like_dom
Homology
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|585112129|gb|EWM29558.1| (peroxisomal -trans-enoyl- isomerase [Nannochloropsis gaditana])

HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
Query:    1 MLAHITRCLASTSTSTSFCLQFLVLVRQFLLTNVQACVIACARRRMADLIIHRKDDNQEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGADLTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQLLQSRL 312
            MLAHITRCLASTSTSTSFCLQFLVLVRQFLLTNVQACVIACARRRMADLIIHRKDDNQEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGADLTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQLLQSRL
Sbjct:    1 MLAHITRCLASTSTSTSFCLQFLVLVRQFLLTNVQACVIACARRRMADLIIHRKDDNQEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGADLTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQLLQSRL 312          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|971520590|dbj|GAQ77577.1| (enoyl-CoA isomerase [Klebsormidium nitens])

HSP 1 Score: 221.09 bits (562), Expect = 1.182e-67
Identity = 109/242 (45.04%), Postives = 158/242 (65.29%), Query Frame = 0
Query:   70 GILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGADLTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQLLQSR 311
            G+  +++ RPR+KNA+   +Y+DL  A D    D  +  ++LTG+GDYFSSGAD++  S   +P+   E++P   FM  L  FPK+VVAAVNGPA+GI VTLL H D+AYA+  ATFWTP LR+A VPE+ S+  FP  MG S A+E+L + ++ +A EAQ + LISE+ P +  + EV  R+  MLA+PL  +S+  FK +++  RL E++ V + E      R A+GD+  AI  L ++R
Sbjct:   15 GLAAIVISRPRRKNAMNDQVYMDLCAAFDHVQSDPHIHAVILTGEGDYFSSGADVSAAS---EPKVDAESAPVGQFMLTLLRFPKVVVAAVNGPAVGIGVTLLPHCDIAYASERATFWTPSLRVAWVPEFCSTVTFPQIMGPSLANEMLLMSRQLSAKEAQQARLISEVFPAETFMAEVQSRVRHMLAQPLAGQSLPLFKKMIRRPRLAELERVFREEMAELGKRSAQGDITQAIQALWEAR 253          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|301113578|ref|XP_002998559.1| (enoyl-CoA hydratase/isomerase family, putative [Phytophthora infestans T30-4] >gi|262111860|gb|EEY69912.1| enoyl-CoA hydratase/isomerase family, putative [Phytophthora infestans T30-4])

HSP 1 Score: 182.57 bits (462), Expect = 1.486e-52
Identity = 99/236 (41.95%), Postives = 138/236 (58.47%), Query Frame = 0
Query:   71 ILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGAD-------LTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGD 299
            + V+ + RPR KNA   A+Y  L  A+D    DES+   VLTG GDYF+SGAD       L D S  P  +     SP+  FM  +    KL++AAVNGPAIGI VTLL H DL YAA  ATFWTPFLR+ +VPE+ASS  FP  +G   A+ L+   K +TA EA +++++ E+ PT   L +VL  L  ++     + S+  +K L++ +R  ++ + +  EF   D R A G+
Sbjct:   20 VFVVEMSRPRAKNAFNDALYEQLTAALDAFEADESLHAFVLTGHGDYFTSGADVKETAAILGDGSVRPPSQ-----SPSHTFMHKMLDCNKLLIAAVNGPAIGIGVTLLMHCDLVYAADSATFWTPFLRIGVVPEFASSYTFPHLLGPIVANNLVIRSKVYTAQEALSTNIVGEVFPTTGFLEKVLAELTPLVNNRFNKTSLPVYKTLLRRERAPKIREALFYEFEQLDRRAASGE 250          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|566019312|gb|ETI42223.1| (hypothetical protein F443_12621 [Phytophthora parasitica P1569])

HSP 1 Score: 182.57 bits (462), Expect = 1.883e-52
Identity = 103/257 (40.08%), Postives = 144/257 (56.03%), Query Frame = 0
Query:   58 QEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGAD-------LTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQL 307
            QEK  +       I V+ + RPR KNA   A+Y  L  A+D    D+S+   VLTG GDYF+SGAD       L D S  P  +     SP+  FM  +    KL++AAVNGPAIGI VTLL H DL YAA  ATFWTPFLR+ +VPE+ASS  FP  +G + A+ L+   K +TA EA  + ++ EI PT+  L  V   L  ++     + S+  +K+L++ +R  ++ + +  EF   D R A G+    + +L
Sbjct:    7 QEKVVRTHAREGCIFVVEMCRPRAKNAFNDALYEQLTAALDEFEADDSLHVFVLTGHGDYFTSGADVKETAAILGDGSVRPPSQ-----SPSHTFMHKMLDCKKLLIAAVNGPAIGIGVTLLMHCDLVYAADSATFWTPFLRIGVVPEFASSYTFPHLLGPTVANNLVIRSKVYTAQEALNASIVGEIFPTNGFLEAVFAELTPLVNNRFNKTSLPVYKSLLRRERAPKIREALFYEFEQLDRRAASGEFLATVTEL 258          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|570979007|gb|ETP40076.1| (hypothetical protein F442_12538 [Phytophthora parasitica P10297])

HSP 1 Score: 182.185 bits (461), Expect = 2.052e-52
Identity = 103/257 (40.08%), Postives = 144/257 (56.03%), Query Frame = 0
Query:   58 QEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGAD-------LTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQL 307
            QEK  +       I V+ + RPR KNA   A+Y  L  A+D    D+S+   VLTG GDYF+SGAD       L D S  P  +     SP+  FM  +    KL++AAVNGPAIGI VTLL H DL YAA  ATFWTPFLR+ +VPE+ASS  FP  +G + A+ L+   K +TA EA  + ++ EI PT+  L  V   L  ++     + S+  +K+L++ +R  ++ + +  EF   D R A G+    + +L
Sbjct:    7 QEKVVRTHAREGCIFVVEMCRPRAKNAFNDALYEQLTAALDEFEADDSLHAFVLTGHGDYFTSGADVKETAAILGDGSVRPPSQ-----SPSHTFMHKMLDCKKLLIAAVNGPAIGIGVTLLMHCDLVYAADSATFWTPFLRIGVVPEFASSYTFPHLLGPTVANNLVIRSKVYTAQEALNASIVGEIFPTNGFLEAVFAELTPLVNNRFNKTSLPVYKSLLRRERAPKIREALFYEFEQLDRRAASGEFLATVTEL 258          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|567956620|gb|ETK82240.1| (hypothetical protein L915_12351 [Phytophthora parasitica] >gi|568014694|gb|ETL88871.1| hypothetical protein L917_12107 [Phytophthora parasitica] >gi|568044941|gb|ETM42112.1| hypothetical protein L914_12191 [Phytophthora parasitica] >gi|570946701|gb|ETP11958.1| hypothetical protein F441_12590 [Phytophthora parasitica CJ01A1] >gi|970631893|gb|KUF78340.1| Enoyl-CoA delta isomerase 2 [Phytophthora nicotianae] >gi|970633911|gb|KUF79368.1| Enoyl-CoA delta isomerase 2 [Phytophthora nicotianae])

HSP 1 Score: 182.185 bits (461), Expect = 2.386e-52
Identity = 103/257 (40.08%), Postives = 144/257 (56.03%), Query Frame = 0
Query:   58 QEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGAD-------LTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQL 307
            QEK  +       I V+ + RPR KNA   A+Y  L  A+D    D+S+   VLTG GDYF+SGAD       L D S  P  +     SP+  FM  +    KL++AAVNGPAIGI VTLL H DL YAA  ATFWTPFLR+ +VPE+ASS  FP  +G + A+ L+   K +TA EA  + ++ EI PT+  L  V   L  ++     + S+  +K+L++ +R  ++ + +  EF   D R A G+    + +L
Sbjct:    7 QEKVVRTHVREGCIFVVEMCRPRAKNAFNDALYEQLTAALDEFEADDSLHVFVLTGHGDYFTSGADVKETAAILGDGSVRPPSQ-----SPSHTFMHKMLDCKKLLIAAVNGPAIGIGVTLLMHCDLVYAADSATFWTPFLRIGVVPEFASSYTFPHLLGPTVANNLVIRSKVYTAQEALNASIVGEIFPTNGFLEAVFAELTPLVNNRFNKTSLPVYKSLLRRERAPKIREALFYEFEQLDRRAASGEFLATVTEL 258          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|567985288|gb|ETL35633.1| (hypothetical protein L916_12267 [Phytophthora parasitica])

HSP 1 Score: 182.185 bits (461), Expect = 2.464e-52
Identity = 103/257 (40.08%), Postives = 144/257 (56.03%), Query Frame = 0
Query:   58 QEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGAD-------LTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQL 307
            QEK  +       I V+ + RPR KNA   A+Y  L  A+D    D+S+   VLTG GDYF+SGAD       L D S  P  +     SP+  FM  +    KL++AAVNGPAIGI VTLL H DL YAA  ATFWTPFLR+ +VPE+ASS  FP  +G + A+ L+   K +TA EA  + ++ EI PT+  L  V   L  ++     + S+  +K+L++ +R  ++ + +  EF   D R A G+    + +L
Sbjct:    7 QEKVVRTHVREGCIFVVEMCRPRAKNAFNDALYEQLTAALDEFEADDSLHAFVLTGHGDYFTSGADVKETAAILGDGSVRPPSQ-----SPSHTFMHKMLDCKKLLIAAVNGPAIGIGVTLLMHCDLVYAADSATFWTPFLRIGVVPEFASSYTFPHLLGPTVANNLVIRSKVYTAQEALNASIVGEIFPTNGFLEAVFAELTPLVNNRFNKTSLPVYKSLLRRERAPKIREALFYEFEQLDRRAASGEFLATVTEL 258          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|675200177|ref|XP_008908973.1| (hypothetical protein PPTG_13262 [Phytophthora parasitica INRA-310] >gi|568091083|gb|ETN05909.1| hypothetical protein PPTG_13262 [Phytophthora parasitica INRA-310])

HSP 1 Score: 182.185 bits (461), Expect = 2.545e-52
Identity = 103/257 (40.08%), Postives = 144/257 (56.03%), Query Frame = 0
Query:   58 QEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGAD-------LTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQL 307
            QEK  +       I V+ + RPR KNA   A+Y  L  A+D    D+S+   VLTG GDYF+SGAD       L D S  P  +     SP+  FM  +    KL++AAVNGPAIGI VTLL H DL YAA  ATFWTPFLR+ +VPE+ASS  FP  +G + A+ L+   K +TA EA  + ++ EI PT+  L  V   L  ++     + S+  +K+L++ +R  ++ + +  EF   D R A G+    + +L
Sbjct:    7 QEKVVRTHVREGCIFVVEMCRPRAKNAFNDALYEQLTAALDEFEADDSLHAFVLTGHGDYFTSGADVKETAAILGDGSVRPPSQ-----SPSHTFMHKMLDCKKLLIAAVNGPAIGIGVTLLMHCDLVYAADSATFWTPFLRIGVVPEFASSYTFPHLLGPTVANNLVIRSKVYTAQEALNASIVGEIFPTNGFLEAVFAELTPLVNNRFNKTSLPVYKSLLRRERAPKIREALFYEFEQLDRRAASGEFLATVTEL 258          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|570322878|gb|ETO70826.1| (hypothetical protein F444_12738 [Phytophthora parasitica P1976] >gi|570322898|gb|ETO70846.1| hypothetical protein F444_12726 [Phytophthora parasitica P1976])

HSP 1 Score: 178.718 bits (452), Expect = 2.658e-51
Identity = 98/237 (41.35%), Postives = 136/237 (57.38%), Query Frame = 0
Query:   78 RPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGAD-------LTDESWTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGDVAFAIGQL 307
            RPR KNA   A+Y  L  A+D    D+S+   VLTG GDYF+SGAD       L D S  P  +     SP+  FM  +    KL++AAVNGPAIGI VTLL H DL YAA  ATFWTPFLR+ +VPE+ASS  FP  +G + A+ L+   K +TA EA  + ++ EI PT+  L  V   L  ++     + S+  +K+L++ +R  ++ + +  EF   D R A G+    + +L
Sbjct:    3 RPRAKNAFNDALYEQLTAALDEFEADDSLHVFVLTGHGDYFTSGADVKETAAILGDGSVRPPSQ-----SPSHTFMHKMLDCKKLLIAAVNGPAIGIGVTLLMHCDLVYAADSATFWTPFLRIGVVPEFASSYTFPHLLGPTVANNLVIRSKVYTAQEALNASIVGEIFPTNGFLEAVFAELTPLVNNRFNKTSLPVYKSLLRRERAPKIREALFYEFEQLDRRAASGEFLATVTEL 234          
BLAST of EWM29558.1 vs. NCBI_GenBank
Match: gi|695447324|ref|XP_009534708.1| (hypothetical protein PHYSODRAFT_361865 [Phytophthora sojae] >gi|348670025|gb|EGZ09847.1| hypothetical protein PHYSODRAFT_361865 [Phytophthora sojae])

HSP 1 Score: 179.104 bits (453), Expect = 3.501e-51
Identity = 101/248 (40.73%), Postives = 141/248 (56.85%), Query Frame = 0
Query:   57 NQEKYFQEERPSPGILVLLLDRPRKKNAITGAMYLDLADAMDRAAMDESVTCLVLTGKGDYFSSGADLTDES-----WTPDPEHKMETSPAAIFMKALSHFPKLVVAAVNGPAIGIAVTLLCHVDLAYAAPHATFWTPFLRMAIVPEYASSALFPLTMGRSKASELLFLGKKFTATEAQASHLISEIIPTDRLLTEVLLRLEDMLAKPLVQKSVVAFKALMKSQRLREVDDVIKAEFRAFDDRIAEGD 299
             QEK  +    S  I V  + RPR KNA   A+Y  L  A+D    D+S+   VLTG GDYF+SGAD+ + +      T  P  K   SP+  FM  +    KL+VAAVNGPAIGI VTLL H DL YAA  AT WTPFLR+ +VPE+ASS  FP  +G + A+ L+   K + A EA  + ++ E+ PT+  L  VL  L  ++     + S+  +K+L++ +R  ++ + +  EF   D R A G+
Sbjct:    6 QQEKVVRSYVHSGCIYVAEMRRPRAKNAFNDALYQQLTAALDEFEADDSLQAFVLTGHGDYFTSGADVKETAAILGDGTIRPPSK---SPSHAFMHKMLDCKKLLVAAVNGPAIGIGVTLLMHCDLVYAADSATLWTPFLRIGVVPEFASSYTFPHLLGPTVANNLVIRSKVYKAQEALDAKIVGEVFPTNGFLETVLAELTPLVTNRFNRTSLPVYKSLLRRERAPKIREALFYEFEQLDRRAASGE 250          
The following BLAST results are available for this feature:
BLAST of EWM29558.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112129|gb|EWM29558.1|0.000e+0100.00peroxisomal -trans-enoyl- isomerase [Nannochlorops... [more]
gi|971520590|dbj|GAQ77577.1|1.182e-6745.04enoyl-CoA isomerase [Klebsormidium nitens][more]
gi|301113578|ref|XP_002998559.1|1.486e-5241.95enoyl-CoA hydratase/isomerase family, putative [Ph... [more]
gi|566019312|gb|ETI42223.1|1.883e-5240.08hypothetical protein F443_12621 [Phytophthora para... [more]
gi|570979007|gb|ETP40076.1|2.052e-5240.08hypothetical protein F442_12538 [Phytophthora para... [more]
gi|567956620|gb|ETK82240.1|2.386e-5240.08hypothetical protein L915_12351 [Phytophthora para... [more]
gi|567985288|gb|ETL35633.1|2.464e-5240.08hypothetical protein L916_12267 [Phytophthora para... [more]
gi|675200177|ref|XP_008908973.1|2.545e-5240.08hypothetical protein PPTG_13262 [Phytophthora para... [more]
gi|570322878|gb|ETO70826.1|2.658e-5141.35hypothetical protein F444_12738 [Phytophthora para... [more]
gi|695447324|ref|XP_009534708.1|3.501e-5140.73hypothetical protein PHYSODRAFT_361865 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1134rna1134Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications