EWM29533.1, cds1125 (CDS) Nannochloropsis gaditana

Overview
NameEWM29533.1
Unique Namecds1125
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1248268..1248963 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29533.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g41.8622.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1248268..1248963 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027973DUF4602
Homology
BLAST of EWM29533.1 vs. NCBI_GenBank
Match: gi|585112104|gb|EWM29533.1| (hypothetical protein Naga_100006g41 [Nannochloropsis gaditana])

HSP 1 Score: 456.833 bits (1174), Expect = 2.408e-162
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 MAGKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGALSNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMGKRGGRGGDKRGGRGRGEAVGSGRAAGRGRTAGKQRKG 231
            MAGKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGALSNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMGKRGGRGGDKRGGRGRGEAVGSGRAAGRGRTAGKQRKG
Sbjct:    1 MAGKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGALSNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMGKRGGRGGDKRGGRGRGEAVGSGRAAGRGRTAGKQRKG 231          
BLAST of EWM29533.1 vs. NCBI_GenBank
Match: gi|553195975|ref|XP_005856241.1| (hypothetical protein NGA_2008000, partial [Nannochloropsis gaditana CCMP526] >gi|422292814|gb|EKU20116.1| hypothetical protein NGA_2008000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 422.55 bits (1085), Expect = 6.219e-149
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0
Query:    1 MAGKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGALSNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMGKRGGRGGDKRGGRGRGEA 212
            MAGKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGALSNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATM KRGGRGGDKRGGRGRGEA
Sbjct:    7 MAGKRPRPPVQVVVAPSIPSPYEYKLQLQREQGERQDEAANGSYKRARSGGALSNGNNAAERAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAALANQILDDGGRRKHDSSGKIGETPYPVLGKMKGGTLFLNRGTIQRATMAKRGGRGGDKRGGRGRGEA 218          
BLAST of EWM29533.1 vs. NCBI_GenBank
Match: gi|298713800|emb|CBJ27172.1| (hypothetical protein Esi_0058_0057 [Ectocarpus siliculosus])

HSP 1 Score: 69.3218 bits (168), Expect = 8.048e-11
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 0
Query:   64 EFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVV 136
            +++++WK+V DLG+ Q TG EKKAY+AR+IVE GG+AP   + P+ +L G R KAKQR+ RR+    E+GVV 
Sbjct:   68 DYQQIWKAVTDLGSEQFTGKEKKAYEARKIVERGGRAPKDPRMPYVMLQGLRKKAKQREERREAMEAEAGVVT 140          
BLAST of EWM29533.1 vs. NCBI_GenBank
Match: gi|813181594|ref|XP_012206150.1| (hypothetical protein SPRG_10007 [Saprolegnia parasitica CBS 223.65] >gi|641529001|gb|KDO23199.1| hypothetical protein SPRG_10007 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 66.6254 bits (161), Expect = 2.912e-10
Identity = 40/99 (40.40%), Postives = 56/99 (56.57%), Query Frame = 0
Query:   46 RARSGGALSNGNNAAERA-EFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSA 143
            R R  GA    + A E A +F++   SV   GA   TG E+K  +  RIV LGGKAP   K P+N LM  R  AK+R+ + +  ++ SG+V  KK+ +A
Sbjct:   34 RPRKAGANEPLSRAEEVAKQFRETLDSVKSFGATHATGKERKKLEIERIVALGGKAPKEQKRPYNQLMAMRKAAKKREEKHEELVKASGIVTGKKKTTA 132          
BLAST of EWM29533.1 vs. NCBI_GenBank
Match: gi|470491390|ref|XP_004345887.1| (hypothetical protein ACA1_182660 [Acanthamoeba castellanii str. Neff] >gi|440800304|gb|ELR21343.1| hypothetical protein ACA1_182660 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 64.3142 bits (155), Expect = 7.720e-9
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = 0
Query:   64 EFKKMWKSVMDLGAMQLT-GYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQ 141
            E + + + V+DLGA Q     +K+AY+ R+I+ LGG+A    K P+NILMG + K K+R+ +R    +E G+ VAKK++
Sbjct:   92 ELQAITREVLDLGATQFKRKKQKRAYEERKIISLGGQASKPDKVPYNILMGMKKKQKERELKRTELDKERGMFVAKKKK 170          
BLAST of EWM29533.1 vs. NCBI_GenBank
Match: gi|669141610|ref|XP_008606367.1| (hypothetical protein SDRG_02550 [Saprolegnia diclina VS20] >gi|530741651|gb|EQC39893.1| hypothetical protein SDRG_02550 [Saprolegnia diclina VS20])

HSP 1 Score: 62.3882 bits (150), Expect = 1.410e-8
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 0
Query:   46 RARSGGALSNGNNAAERA-EFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSA 143
            R R  GA    + A E A +F++   SV   G    TG E+K  +  RIV LGGKAP   K P++ LM  R  AK+R+ +    ++ SG+V  KK+ +A
Sbjct:   34 RPRKAGANEPLSRAEEVAKQFRETLDSVKSFGVTHATGKERKKLEIERIVTLGGKAPKQQKRPYDQLMAMRKAAKKREEKHAELVKASGIVTGKKKTTA 132          
BLAST of EWM29533.1 vs. NCBI_GenBank
Match: gi|675205381|ref|XP_008911575.1| (hypothetical protein PPTG_16046 [Phytophthora parasitica INRA-310] >gi|566014811|gb|ETI37722.1| hypothetical protein F443_16429 [Phytophthora parasitica P1569] >gi|567952165|gb|ETK77846.1| hypothetical protein L915_15969 [Phytophthora parasitica] >gi|567980829|gb|ETL31279.1| hypothetical protein L916_15865 [Phytophthora parasitica] >gi|568010452|gb|ETL84640.1| hypothetical protein L917_15663 [Phytophthora parasitica] >gi|568040320|gb|ETM37780.1| hypothetical protein L914_15797 [Phytophthora parasitica] >gi|568088169|gb|ETN03031.1| hypothetical protein PPTG_16046 [Phytophthora parasitica INRA-310] >gi|570318568|gb|ETO66516.1| hypothetical protein F444_16398 [Phytophthora parasitica P1976] >gi|570942373|gb|ETP07630.1| hypothetical protein F441_16258 [Phytophthora parasitica CJ01A1] >gi|570972881|gb|ETP35659.1| hypothetical protein F442_16273 [Phytophthora parasitica P10297])

HSP 1 Score: 58.5362 bits (140), Expect = 2.748e-7
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   62 RAEFKKMWKSVMDLGAMQLTGYEKKAYDARRIVELGGKAPAAIKTPFNILMGKRAKAKQRDARRDNDIRESGVVVAKKRQSAAA 145
            R EF   + SV++     L G EKK ++A++I  LGGKA      P+ IL+G + K   R  RR+  ++ES VV  K++ S+ +
Sbjct:   51 RKEFDDTFDSVLEFATSNLKGKEKKIHEAKKIEALGGKAAKNRSVPYKILIGLKTKGAARKQRREELLKESDVVTGKRKSSSKS 134          
The following BLAST results are available for this feature:
BLAST of EWM29533.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585112104|gb|EWM29533.1|2.408e-162100.00hypothetical protein Naga_100006g41 [Nannochlorops... [more]
gi|553195975|ref|XP_005856241.1|6.219e-14999.53hypothetical protein NGA_2008000, partial [Nannoch... [more]
gi|298713800|emb|CBJ27172.1|8.048e-1152.05hypothetical protein Esi_0058_0057 [Ectocarpus sil... [more]
gi|813181594|ref|XP_012206150.1|2.912e-1040.40hypothetical protein SPRG_10007 [Saprolegnia paras... [more]
gi|470491390|ref|XP_004345887.1|7.720e-941.77hypothetical protein ACA1_182660 [Acanthamoeba cas... [more]
gi|669141610|ref|XP_008606367.1|1.410e-838.38hypothetical protein SDRG_02550 [Saprolegnia dicli... [more]
gi|675205381|ref|XP_008911575.1|2.748e-736.90hypothetical protein PPTG_16046 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1126rna1126Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications