EWM29598.1, cds1121 (CDS) Nannochloropsis gaditana

Overview
NameEWM29598.1
Unique Namecds1121
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1243703..1243963 +
Alignment locationCM002456.1:1244121..1244180 +

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Properties
Property NameValue
Protein idEWM29598.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g45.8687.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1243703..1243963 +
CM002456.1supercontigCM002456.1:1244121..1244180 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29598.1 vs. NCBI_GenBank
Match: gi|585112169|gb|EWM29598.1| (hypothetical protein Naga_100006g45 [Nannochloropsis gaditana])

HSP 1 Score: 218.394 bits (555), Expect = 4.433e-72
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query:    1 MASRNKYFKDEATGESKESKSGGVAEKNPAKYFRAYRHETKVENALYRTSQSVIGARPPTIATIVTETHKFPQPFSKSLGSLSYRNQSLNTTKSRSKIHRSLDPQF 106
            MASRNKYFKDEATGESKESKSGGVAEKNPAKYFRAYRHETKVENALYRTSQSVIGARPPTIATIVTETHKFPQPFSKSLGSLSYRNQSLNTTKSRSKIHRSLDPQF
Sbjct:    1 MASRNKYFKDEATGESKESKSGGVAEKNPAKYFRAYRHETKVENALYRTSQSVIGARPPTIATIVTETHKFPQPFSKSLGSLSYRNQSLNTTKSRSKIHRSLDPQF 106          
BLAST of EWM29598.1 vs. NCBI_GenBank
Match: gi|299470455|emb|CBN78447.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 62.003 bits (149), Expect = 6.934e-10
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0
Query:   31 KYFRAYRHETKVENALYRTSQSVIGARPPTIATIVTETHKFPQPFSKSLGSLSYRNQSLNTTKSRSKIHRSLDPQF 106
            +  + ++H +K EN LY T+ + IG + PT AT   E     Q FS S   L +R+  LNT  +RS IH  L+PQF
Sbjct:   69 ELLKNFKHTSKKENPLYSTTNNDIGIKRPTGATFTFERRARQQGFSNSFNGLKFRDMGLNTNVTRSNIHDDLNPQF 144          
BLAST of EWM29598.1 vs. NCBI_GenBank
Match: gi|514698898|ref|XP_004997018.1| (hypothetical protein PTSG_02528 [Salpingoeca rosetta] >gi|326436244|gb|EGD81814.1| hypothetical protein PTSG_02528 [Salpingoeca rosetta])

HSP 1 Score: 57.3806 bits (137), Expect = 3.042e-8
Identity = 33/78 (42.31%), Postives = 42/78 (53.85%), Query Frame = 0
Query:   28 NPAKYFRAYRHETKVENALYRTSQSVIGARPPTIATIVTETHKFPQPFSKSLGSLSY-RNQSLNTTKSRSKIHRSLDP 104
            NP + F+ Y      EN +Y+TS S  G  PP + T  T  H   Q FS  LG     RN  LNT K +SK+H++LDP
Sbjct:   56 NPGE-FKGYGKGKGGENPMYQTSSSSYGLLPPNVHTTPTAFHGLNQKFSSHLGQAGMSRNTGLNTAKDKSKVHKALDP 132          
The following BLAST results are available for this feature:
BLAST of EWM29598.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112169|gb|EWM29598.1|4.433e-72100.00hypothetical protein Naga_100006g45 [Nannochlorops... [more]
gi|299470455|emb|CBN78447.1|6.934e-1040.79conserved unknown protein [Ectocarpus siliculosus][more]
gi|514698898|ref|XP_004997018.1|3.042e-842.31hypothetical protein PTSG_02528 [Salpingoeca roset... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1122rna1122Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications