EWM29515.1, cds1089 (CDS) Nannochloropsis gaditana

Overview
NameEWM29515.1
Unique Namecds1089
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1161995..1162543 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29515.1
Productadrenodoxin-like protein
Orig transcript idgnl|cribi|Naga_100006g77.8604.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1161995..1162543 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:00515372 iron, 2 sulfur cluster binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR0010412Fe-2S_ferredoxin-type
IPR012675Beta-grasp_dom
IPR001055Adrenodoxin
Homology
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|585112086|gb|EWM29515.1| (adrenodoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 377.096 bits (967), Expect = 2.014e-132
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MLQLVANISSTGMLQSAVRHVTVARNSIGFRKTCSLPALIQIPRILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            MLQLVANISSTGMLQSAVRHVTVARNSIGFRKTCSLPALIQIPRILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH
Sbjct:    1 MLQLVANISSTGMLQSAVRHVTVARNSIGFRKTCSLPALIQIPRILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|553183909|ref|XP_005853990.1| (hypothetical protein NGA_2031600, partial [Nannochloropsis gaditana CCMP526] >gi|422295070|gb|EKU22369.1| hypothetical protein NGA_2031600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 357.451 bits (916), Expect = 8.768e-125
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query:   11 TGMLQSAVRHVTVARNSIGFRKTCSLPALIQIPRILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            TGMLQSAVRHVTVARNSIGFRKTCSLPALIQIPRILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH
Sbjct:    1 TGMLQSAVRHVTVARNSIGFRKTCSLPALIQIPRILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 172          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|673050057|ref|XP_008878989.1| (hypothetical protein H310_13315 [Aphanomyces invadans] >gi|574465400|gb|ETV92438.1| hypothetical protein H310_13315 [Aphanomyces invadans])

HSP 1 Score: 167.162 bits (422), Expect = 8.050e-50
Identity = 79/139 (56.83%), Postives = 99/139 (71.22%), Query Frame = 0
Query:   44 RILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            R LFHAT+ + HG      N P + L +  K G     D  +G SIL+ AH+++++LEGACE   ACSTCHVI+E+ +F+ L +P EEEEDMLD AFGLT TSRLGCQV +S+DM+   I LP ATRNFY+DGHVPKPH
Sbjct:   20 RRLFHATSLLQHGGSHVAANGPTVPLKFRLKDGSIKVVDAAIGASILDVAHKYDIDLEGACESSLACSTCHVIIEDDLFDKLPEPCEEEEDMLDLAFGLTATSRLGCQVMVSKDMENSVITLPLATRNFYVDGHVPKPH 158          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|698801796|ref|XP_009833927.1| (hypothetical protein H257_09416 [Aphanomyces astaci] >gi|574110885|gb|ETV76382.1| hypothetical protein H257_09416 [Aphanomyces astaci])

HSP 1 Score: 164.851 bits (416), Expect = 7.541e-49
Identity = 80/139 (57.55%), Postives = 99/139 (71.22%), Query Frame = 0
Query:   44 RILFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            R LFHAT  + HG G    N P + L +  K G     D  +G SIL+ AH+++++LEGACE   ACSTCHVI+EE +F+ L +PSEEEEDMLD AFGLT TSRLGCQV +S +M+   + LP ATRNFY+DGHVPKPH
Sbjct:   21 RRLFHATPSLQHG-GAAAANGPTVPLKFRLKDGSIKVVDAQIGTSILDVAHKYDIDLEGACESSLACSTCHVIIEEDLFDKLPEPSEEEEDMLDLAFGLTATSRLGCQVMVSPEMENSVVTLPLATRNFYVDGHVPKPH 158          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|1000779884|gb|KXN71099.1| (ferredoxin precursor [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 162.54 bits (410), Expect = 9.423e-48
Identity = 78/137 (56.93%), Postives = 100/137 (72.99%), Query Frame = 0
Query:   46 LFHATARVAHGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            LF  T    HGSGK       I +++I  +GE  +  G VG+SIL+ AH +E++LEGACE   ACSTCHVIL + +F+SLE+P++EE DMLD AFGLT TSRLGCQVEL +DM+G+ +K+PSATRN  +DG  PKPH
Sbjct:   39 LFSTTNISLHGSGKP-PEGEGITINFITPEGETVSARGRVGQSILDVAHSNEIDLEGACEASLACSTCHVILTDEIFDSLEEPTDEENDMLDLAFGLTETSRLGCQVELREDMEGMTVKIPSATRNMAVDGFKPKPH 174          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|1210518026|dbj|GAX22957.1| (hypothetical protein FisN_15Hh148 [Fistulifera solaris])

HSP 1 Score: 161.77 bits (408), Expect = 1.054e-47
Identity = 73/128 (57.03%), Postives = 97/128 (75.78%), Query Frame = 0
Query:   55 HGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            HG  K   +AP I + ++            VGES+L+ AHR+E++LEGACEGVCACSTCH+I+ + +++ L DPSE+EEDMLD AFGLT TSRLGCQV +++DM+G + K+P+ATRNFY+DGH PKPH
Sbjct:   26 HGGPKVPNDAPTITVTFLQPDKTRKEVQARVGESLLQTAHRNEIDLEGACEGVCACSTCHLIMPQDLYDILPDPSEDEEDMLDMAFGLTDTSRLGCQVIVTKDMEGTEFKMPAATRNFYVDGHKPKPH 153          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|299115246|emb|CBN74086.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 159.073 bits (401), Expect = 4.112e-46
Identity = 75/135 (55.56%), Postives = 101/135 (74.81%), Query Frame = 0
Query:   49 ATARVAHGSGKD-LKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            +TAR  HG  ++  ++A  + + W  K G + TT    G +++  AH+H ++LEGACEGVCACSTCHVI+   VF+ L + SE+EEDMLD AFGLT TSRLGCQV ++ +MDG+ +KLP+ATRNFY+DGHVP+PH
Sbjct:   66 STARACHGDHEEGFEHAQTVQITWENKDGLKKTT-AKCGMNLMRVAHKHGIDLEGACEGVCACSTCHVIMSNEVFDQLPEASEDEEDMLDLAFGLTETSRLGCQVIVTPEMDGIVVKLPAATRNFYVDGHVPQPH 199          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|303287909|ref|XP_003063243.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226455075|gb|EEH52379.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 155.221 bits (391), Expect = 1.728e-45
Identity = 74/129 (57.36%), Postives = 98/129 (75.97%), Query Frame = 0
Query:   55 HGSGKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILE-EPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            HG GKD  NA  I++ +I K G E      +G+S+LE AH++++ELEGACEG  ACSTCHVI+E E V+++L +P ++E DMLD AFGLT TSRLGCQV  ++++DGL++ LP ATRNF +DG VPKPH
Sbjct:    2 HGHGKDDPNAETIDVTFIEKDGTETKVKAPIGQSMLEVAHKNDIELEGACEGSLACSTCHVIIEDEKVYDALPEPDDDENDMLDLAFGLTETSRLGCQVIAAKEIDGLRLSLPRATRNFAVDGFVPKPH 130          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|1072227413|gb|OEU12152.1| (ferredoxin, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 153.68 bits (387), Expect = 5.357e-45
Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 0
Query:   81 TDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEE-PVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
             D  VGES+L+ A R+++ELEGACEGVCACSTCH+I     +++SLE+PSE+EEDMLD AFGLT TSRLGCQV +   MDG+ I++P ATRNFY+DGHVPKPH
Sbjct:   17 VDAYVGESLLQVAQRNDIELEGACEGVCACSTCHIIFSSYDLYDSLEEPSEDEEDMLDMAFGLTETSRLGCQVLVDSKMDGIDIEVPKATRNFYVDGHVPKPH 119          
BLAST of EWM29515.1 vs. NCBI_GenBank
Match: gi|1134898931|gb|OMJ96076.1| (hypothetical protein SteCoe_460 [Stentor coeruleus])

HSP 1 Score: 152.91 bits (385), Expect = 1.345e-44
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 0
Query:   58 GKDLKNAPRINLHWIGKKGEEFTTDGIVGESILEAAHRHEVELEGACEGVCACSTCHVILEEPVFESLEDPSEEEEDMLDQAFGLTPTSRLGCQVELSQDMDGLKIKLPSATRNFYIDGHVPKPH 182
            G+ + ++  I+  W+   G E   +G +GES+LE AHR+ ++LEGAC+G  ACSTCHVIL E +++   +P+ +EEDMLD AFGLTPTSRLGCQ+++++DM   +I+LP A+ N Y+DGH PKPH
Sbjct:    6 GRFMSSSKTISFFWVTHDGRETKVEGKIGESLLENAHRNSIDLEGACDGSLACSTCHVILSESLYDVQPEPTADEEDMLDLAFGLTPTSRLGCQIKITEDMSNTRIQLPKASVNMYVDGHKPKPH 130          
The following BLAST results are available for this feature:
BLAST of EWM29515.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112086|gb|EWM29515.1|2.014e-132100.00adrenodoxin-like protein [Nannochloropsis gaditana... [more]
gi|553183909|ref|XP_005853990.1|8.768e-125100.00hypothetical protein NGA_2031600, partial [Nannoch... [more]
gi|673050057|ref|XP_008878989.1|8.050e-5056.83hypothetical protein H310_13315 [Aphanomyces invad... [more]
gi|698801796|ref|XP_009833927.1|7.541e-4957.55hypothetical protein H257_09416 [Aphanomyces astac... [more]
gi|1000779884|gb|KXN71099.1|9.423e-4856.93ferredoxin precursor [Conidiobolus coronatus NRRL ... [more]
gi|1210518026|dbj|GAX22957.1|1.054e-4757.03hypothetical protein FisN_15Hh148 [Fistulifera sol... [more]
gi|299115246|emb|CBN74086.1|4.112e-4655.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|303287909|ref|XP_003063243.1|1.728e-4557.36predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|1072227413|gb|OEU12152.1|5.357e-4566.99ferredoxin, partial [Fragilariopsis cylindrus CCMP... [more]
gi|1134898931|gb|OMJ96076.1|1.345e-4452.00hypothetical protein SteCoe_460 [Stentor coeruleus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1090rna1090Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications