EWM29534.1, cds1080 (CDS) Nannochloropsis gaditana

Overview
NameEWM29534.1
Unique Namecds1080
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1143978..1144796 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29534.1
Productunc-50 family protein
Orig transcript idgnl|cribi|Naga_100006g85.8623.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1143978..1144796 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007881UNC-50
Homology
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|585112105|gb|EWM29534.1| (unc-50 family protein [Nannochloropsis gaditana])

HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272
            MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR
Sbjct:    1 MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|553191235|ref|XP_005855343.1| (unc-50 family protein [Nannochloropsis gaditana CCMP526] >gi|422293718|gb|EKU21018.1| unc-50 family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 548.895 bits (1413), Expect = 0.000e+0
Identity = 271/272 (99.63%), Postives = 271/272 (99.63%), Query Frame = 0
Query:    1 MRSYQVGGLSTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272
            MRSYQVGGL TPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR
Sbjct:    1 MRSYQVGGLGTPHYTGSGHYRRHSSSGGGGGGSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYYR 272          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1072231581|gb|OEU16313.1| (UNC-50 protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 222.631 bits (566), Expect = 4.003e-69
Identity = 118/244 (48.36%), Postives = 163/244 (66.80%), Query Frame = 0
Query:   32 GSSGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPV-HYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRI--QATRTMARLYY 271
             S+   +Y+ R+ D  QMD  +A + +  + S+ P  +YK A YRK TKNHWARDDPA A ++  FL VS  AYA++F V   PV   +   L ++LF+WL +G ++ATV R +ANR+L + +S S V Q VEW YAFDIHCNAF P F+L   + +FLLPL+L  SL +L+VSN ++ A FA Y+Y+THLGYRALPFL +TEVFL+P     L+F    VL ++G P+ +   A+R MA +Y+
Sbjct:    3 SSASTAQYIARLTDFRQMDIQSALDQMKTILSTRPHVVYKTAYYRKQTKNHWARDDPAFAALEFIFLTVSCIAYAISFRV---PVTEGIAFWLYSVLFNWLGLGFIIATVGREMANRHLTDHKSTSHVRQSVEWLYAFDIHCNAFFPVFVLLYGVQFFLLPLVLGKSLFSLVVSNTLYAAGFAWYWYITHLGYRALPFLSQTEVFLFPVAAIALVF----VLNLVGYPFGLGWNASRIMAHIYF 239          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|223998268|ref|XP_002288807.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975915|gb|EED94243.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 212.231 bits (539), Expect = 2.421e-65
Identity = 107/214 (50.00%), Postives = 153/214 (71.50%), Query Frame = 0
Query:   36 LLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLL-ELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFL 247
            L +Y  R+ D  QMD  +A + +  LC+ +PQR+ KMA YRK TKNHWARDDPA + +QI  L++SS AY LAF +        F+ L+++L +WL  G+V+A+V R +AN++L+ E RS S V+Q VEW YAFD+HCN+F+P F++   + +FLLP++L  SL++L V+N ++  AF  YFY+THLGYRALPFL  TEVFL+P I A+L+ ++
Sbjct:    1 LQQYFSRMTDLQQMDLQSAIDQMRTLCTFYPQRVSKMAYYRKQTKNHWARDDPAFSFLQIVMLVISSIAYGLAFRLSSFSAILSFV-LKSVLINWLGFGVVMASVGRVIANQHLMIEGRSASHVKQSVEWLYAFDVHCNSFVPLFVILYGVQFFLLPVVLGTSLLSLGVANTLYAIAFGWYFYITHLGYRALPFLSNTEVFLFP-IAAILVLYV 212          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1210530188|dbj|GAX11104.1| (hypothetical protein FisN_9Hh195 [Fistulifera solaris])

HSP 1 Score: 207.994 bits (528), Expect = 6.280e-63
Identity = 111/237 (46.84%), Postives = 162/237 (68.35%), Query Frame = 0
Query:   37 LEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVR-GGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYY 271
            L+Y +R+ D  QMD  +A + +  L S+ PQ +YK + YRK TKNHWARDDPA   +Q  FL+V+  AY++AF +   G + +L   L  +L++WL +GL++AT+CR +ANR L+  +S S V Q+VEW YAFDIHCN+F P F+L  V+ +FLLP++L+  L++L+++N+I+  A + Y+Y+THLGYRALPFL  TEVFL+P +  V+ +   LV   LG  +     R MAR Y+
Sbjct:   36 LQYFQRLTDVRQMDIQSALDQMKTLISTRPQVVYKTSYYRKQTKNHWARDDPAFVAMQAVFLVVAGIAYSVAFRISLQGAISFL---LYTVLWNWLGLGLLIATICREIANRQLVVQQSTSHVRQQVEWLYAFDIHCNSFFPVFVLLYVVQFFLLPVILQEGLLSLVIANSIYAGALSWYWYITHLGYRALPFLSHTEVFLFPIVAVVICYCAILVGYPLG--FGWNWARIMARFYF 267          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1210514117|dbj|GAX26899.1| (hypothetical protein FisN_9Lh195 [Fistulifera solaris])

HSP 1 Score: 207.223 bits (526), Expect = 1.068e-62
Identity = 111/237 (46.84%), Postives = 162/237 (68.35%), Query Frame = 0
Query:   37 LEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVR-GGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYY 271
            L+Y +R+ D  QMD  +A + +  L S+ PQ +YK + YRK TKNHWARDDPA   +Q  FL+V+  AY++AF +   G + +L   L  +L++WL +GL++AT+CR +ANR L+  +S S V Q+VEW YAFDIHCN+F P F+L  V+ +FLLP++L+  L++L+++N+I+  A + Y+Y+THLGYRALPFL  TEVFL+P +  V+ +   LV   LG  +     R MAR Y+
Sbjct:   36 LQYFQRLTDVRQMDIQSALDQMKTLISTRPQLVYKTSYYRKQTKNHWARDDPAFVAMQAVFLVVAGIAYSVAFRISLQGAISFL---LYTVLWNWLGLGLLIATICREIANRQLVVQQSTSHVRQQVEWLYAFDIHCNSFFPVFVLLYVVQFFLLPVILQEGLLSLVIANSIYAGALSWYWYITHLGYRALPFLSHTEVFLFPIVAVVVCYCAILVGYPLG--FGWNWARIMARFYF 267          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|299472382|emb|CBN77570.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 204.912 bits (520), Expect = 2.039e-62
Identity = 116/223 (52.02%), Postives = 157/223 (70.40%), Query Frame = 0
Query:   49 MDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYY 271
            MD +A  + ++ L S +PQR+YK A YRK TKNHWARDDP  AV+Q  FL+V++ A+ +AF  RG    Y+ L L ++   WLL G+V++++CR +AN  LL+ RSHSVEQEVEW YA DIH N+F P F+   V+   LLPLL+  S+ +LI++N ++  AF+VYFYVTHLGYR+LPFLH TEVFLYP +  ++L  L ++L   G   RI AT  MA+LY+
Sbjct:    1 MDMEATADQMVTLLSVNPQRVYKTAYYRKQTKNHWARDDPGFAVLQTFFLVVATFAFGVAFGARGVWT-YVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVEQEVEWMYALDIHSNSFFPLFVCLYVVQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFG--IRINATLAMAKLYF 220          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|1214697386|gb|OWZ10674.1| (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 204.142 bits (518), Expect = 2.868e-61
Identity = 114/243 (46.91%), Postives = 149/243 (61.32%), Query Frame = 0
Query:   16 GSGHYRRHSSSGGGGGGS-SGLLEYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS------VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVL 251
            GS H ++   SG     S S   EY  R++D  QMD DA F  ++ LC   P ++YK A YRK TKN WARDDPA AVIQ  FLLV++ A+A+AF V      Y  L   A++ +WL  GLV++T+C  +AN +L + R+HS      VEQ VEW++AFDIHCN+F   FL   VL +FL P+L   S + L+V N ++   +  Y Y+T LGY ALPFLHRTE  L P I+ + LF   LVL
Sbjct:   19 GSRHKKKSKRSGADVFRSCSAFPEYFARVLDYRQMDLDATFYQMVTLCV-QPAKVYKSAYYRKQTKNRWARDDPAFAVIQFVFLLVATVAWAIAFRV-DSFAKYASLLFHAVVVEWLGFGLVISTLCWWIANHHLRQ-RNHSMGDALYVEQRVEWQFAFDIHCNSFFIMFLFLYVLQFFLAPILASDSFLMLLVGNLLYSLGWGFYTYITFLGYMALPFLHRTEQLLLPLIIVLALFISTLVL 258          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|219119214|ref|XP_002180372.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407845|gb|EEC47780.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 199.904 bits (507), Expect = 1.293e-60
Identity = 101/215 (46.98%), Postives = 145/215 (67.44%), Query Frame = 0
Query:   38 EYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVR-GGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLV 250
            +YL R+ D  QMD  +A + +  L S+ PQ +YK A YRK TKNHWARDDPA   +Q  FLL++  AYA++F +     + +L   L   L++WL +G ++A++CR +ANR+L   +S+S V Q+VE  YAFDIHCNAF P F++   + +FLLP +L   L AL+++N ++ AA + Y+Y+THLGYR LPFL  TEVFL+P    VLL+ + +V
Sbjct:    1 QYLSRLTDVQQMDIQSALDQMKSLLSTRPQLVYKTAYYRKQTKNHWARDDPAFVALQAVFLLIACIAYAVSFRISVTDTISFL---LYNALWNWLGMGFILASLCREIANRHLTLHQSNSHVRQQVELLYAFDIHCNAFFPVFVVLYGIQFFLLPFVLAEGLFALLLANTLYAAALSWYWYITHLGYRTLPFLSNTEVFLFPIAAIVLLYTVMIV 212          
BLAST of EWM29534.1 vs. NCBI_GenBank
Match: gi|397616508|gb|EJK64009.1| (hypothetical protein THAOC_15303 [Thalassiosira oceanica])

HSP 1 Score: 202.986 bits (515), Expect = 1.395e-60
Identity = 111/262 (42.37%), Postives = 163/262 (62.21%), Query Frame = 0
Query:   38 EYLRRIVDPNQMDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHS-VEQEVEWRYAFDIHCNAFLPFFLL-------------------TSVLH-----YFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRI--QATRTMARLYYR 272
            +YL+R+ D  QMD  +A + +  L + +PQ++YKMA YRK TKNHWARDDPA   +Q+  ++ SS+AY  AF V        F+  +++L  WL  G+V+A+V R VAN++L   RS S V+Q VEW YAFD+HCNAF+P F+L                   +++LH     +FLLPL+L  SL++L +SN ++  AF  YFY+ HLG+RALPFL  TEVFL+P  + ++L+    V   +G P+ +   A+R +A +Y+ 
Sbjct:   40 QYLQRVTDLQQMDLQSAVDQMRTLLTLYPQKVYKMAYYRKQTKNHWARDDPAFCFLQVIMVIASSTAYGFAFRVSSLSSIIGFVT-KSVLLHWLGFGVVMASVGRVVANQHLQAERSSSHVKQSVEWLYAFDVHCNAFVPLFVLLCKWRRILVVRTLLTTDVSSNLLHVDGIQFFLLPLVLGTSLLSLGISNTLYAIAFGWYFYIFHLGFRALPFLSNTEVFLFPMAIILVLY----VFNFVGYPFGLGFNASRIVAYVYFE 296          
The following BLAST results are available for this feature:
BLAST of EWM29534.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112105|gb|EWM29534.1|0.000e+0100.00unc-50 family protein [Nannochloropsis gaditana][more]
gi|553191235|ref|XP_005855343.1|0.000e+099.63unc-50 family protein [Nannochloropsis gaditana CC... [more]
gi|1072231581|gb|OEU16313.1|4.003e-6948.36UNC-50 protein [Fragilariopsis cylindrus CCMP1102][more]
gi|223998268|ref|XP_002288807.1|2.421e-6550.00predicted protein, partial [Thalassiosira pseudona... [more]
gi|1210530188|dbj|GAX11104.1|6.280e-6346.84hypothetical protein FisN_9Hh195 [Fistulifera sola... [more]
gi|1210514117|dbj|GAX26899.1|1.068e-6246.84hypothetical protein FisN_9Lh195 [Fistulifera sola... [more]
gi|299472382|emb|CBN77570.1|2.039e-6252.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214697386|gb|OWZ10674.1|2.868e-6146.91Transmembrane protein [Phytophthora megakarya][more]
gi|219119214|ref|XP_002180372.1|1.293e-6046.98predicted protein, partial [Phaeodactylum tricornu... [more]
gi|397616508|gb|EJK64009.1|1.395e-6042.37hypothetical protein THAOC_15303 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1081rna1081Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications