EWM29622.1, cds1050 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|585112194|gb|EWM29622.1| (40s ribosomal protein s21 [Nannochloropsis gaditana]) HSP 1 Score: 166.392 bits (420), Expect = 2.674e-52 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSEQ 80
MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSEQ
Sbjct: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSEQ 80
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|698807990|ref|XP_009837024.1| (hypothetical protein H257_11716 [Aphanomyces astaci] >gi|574108089|gb|ETV73598.1| hypothetical protein H257_11716 [Aphanomyces astaci]) HSP 1 Score: 111.694 bits (278), Expect = 1.153e-30 Identity = 50/79 (63.29%), Postives = 67/79 (84.81%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQN+AGQN+D+YIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY G A++GYIRAKGE DAA+T++V+KA+ +
Sbjct: 1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVDANGVYT-GQNDVYALSGYIRAKGEGDAALTDLVRKAEEK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|673044917|ref|XP_008876419.1| (hypothetical protein H310_11494 [Aphanomyces invadans] >gi|574467807|gb|ETV94828.1| hypothetical protein H310_11494 [Aphanomyces invadans]) HSP 1 Score: 109.383 bits (272), Expect = 1.023e-29 Identity = 49/79 (62.03%), Postives = 66/79 (83.54%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQN+AGQN+D+YIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY G A++GYIRAKGE D A+T++V+KA+ +
Sbjct: 1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVDANGVYT-GQNDVYALSGYIRAKGEGDHALTDLVRKAEEK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|1214655961|gb|OWY90307.1| (40S ribosomal protein S21 [Phytophthora megakarya]) HSP 1 Score: 108.997 bits (271), Expect = 1.536e-29 Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV V+A+GV+ G+ T A+AGYIR GE D A+TE+ ++AD++
Sbjct: 1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDQAITELARQADAK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|301108027|ref|XP_002903095.1| (40S ribosomal protein S21 [Phytophthora infestans T30-4] >gi|675204677|ref|XP_008911223.1| hypothetical protein PPTG_15683 [Phytophthora parasitica INRA-310] >gi|262097467|gb|EEY55519.1| 40S ribosomal protein S21 [Phytophthora infestans T30-4] >gi|566015123|gb|ETI38034.1| hypothetical protein F443_16131 [Phytophthora parasitica P1569] >gi|567952576|gb|ETK78248.1| hypothetical protein L915_15677 [Phytophthora parasitica] >gi|567981240|gb|ETL31683.1| hypothetical protein L916_15572 [Phytophthora parasitica] >gi|568010730|gb|ETL84913.1| hypothetical protein L917_15395 [Phytophthora parasitica] >gi|568040610|gb|ETM38058.1| hypothetical protein L914_15529 [Phytophthora parasitica] >gi|568040648|gb|ETM38096.1| hypothetical protein L914_15527 [Phytophthora parasitica] >gi|568088593|gb|ETN03450.1| hypothetical protein PPTG_15683 [Phytophthora parasitica INRA-310] >gi|570318855|gb|ETO66803.1| hypothetical protein F444_16116 [Phytophthora parasitica P1976] >gi|570942667|gb|ETP07924.1| hypothetical protein F441_15960 [Phytophthora parasitica CJ01A1] >gi|570973287|gb|ETP35954.1| hypothetical protein F442_15984 [Phytophthora parasitica P10297] >gi|970629529|gb|KUF76764.1| 40S ribosomal protein S21 [Phytophthora nicotianae] >gi|970657947|gb|KUF95771.1| Voltage-gated potassium channel subunit beta-3 [Phytophthora nicotianae]) HSP 1 Score: 108.612 bits (270), Expect = 1.830e-29 Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV V+A+GV+ G+ T A+AGYIR GE D A+TE+ ++AD++
Sbjct: 1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDMAITELARQADAK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|953501432|emb|CEG37433.1| (40s ribosomal protein s21 [Plasmopara halstedii]) HSP 1 Score: 108.227 bits (269), Expect = 2.461e-29 Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV V+A+GV+ G+ T A+AGYIR GE D A+TE+ ++AD++
Sbjct: 1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDIAITELSRQADAK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|1173960936|gb|OQS07017.1| (40S ribosomal protein S21 [Thraustotheca clavata]) HSP 1 Score: 108.227 bits (269), Expect = 3.420e-29 Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQN AGQN+DLYIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY G A+AGYIR KGE D A+TE+ ++A+ +
Sbjct: 1 MQNSAGQNIDLYIPRKCSWTNRLLSAKDHASVQIAVAQVDANGVY-TGQNDVYALAGYIRNKGEGDMALTELTRRAEEK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|1173926618|gb|OQR80798.1| (40S ribosomal protein S21 [Achlya hypogyna]) HSP 1 Score: 107.071 bits (266), Expect = 7.788e-29 Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQN GQN+DLYIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY G A+AGYIR KGEAD A+TE+ ++A+ +
Sbjct: 1 MQNAQGQNIDLYIPRKCSWTNRILAAKDHASVQIAVAQVDANGVYT-GQNDVYALAGYIRNKGEADMALTELTRRAEEK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|669165148|ref|XP_008618136.1| (30S ribosomal protein S21e [Saprolegnia diclina VS20] >gi|813198600|ref|XP_012208883.1| 30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65] >gi|530730246|gb|EQC28488.1| 30S ribosomal protein S21e [Saprolegnia diclina VS20] >gi|641526027|gb|KDO20427.1| 30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 107.071 bits (266), Expect = 8.787e-29 Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQN AGQN+DLYIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY G A+AGYIR KGE D A+TE+ ++A+ +
Sbjct: 1 MQNSAGQNIDLYIPRKCSWTNRILAAKDHASVQIAVAQVDANGVYT-GHNDVYALAGYIRNKGEGDHALTELARRAEEK 78
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|695432058|ref|XP_009530842.1| (hypothetical protein PHYSODRAFT_286615 [Phytophthora sojae] >gi|348673594|gb|EGZ13413.1| hypothetical protein PHYSODRAFT_286615 [Phytophthora sojae]) HSP 1 Score: 106.301 bits (264), Expect = 1.537e-28 Identity = 46/79 (58.23%), Postives = 65/79 (82.28%), Query Frame = 0
Query: 1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV V+A+GV+ G+ T A+AGYIR GE D A+TE+ ++ D++
Sbjct: 1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTYALAGYIRHHGEGDQAITELARQTDAK 78 The following BLAST results are available for this feature:
BLAST of EWM29622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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