EWM29622.1, cds1050 (CDS) Nannochloropsis gaditana

Overview
NameEWM29622.1
Unique Namecds1050
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1050029..1050078 +
Alignment locationCM002456.1:1050279..1050327 +
Alignment locationCM002456.1:1050478..1050621 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29622.1
Product40s ribosomal protein s21
Orig transcript idgnl|cribi|Naga_100050g5.6845.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1050029..1050078 +
CM002456.1supercontigCM002456.1:1050279..1050327 +
CM002456.1supercontigCM002456.1:1050478..1050621 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001931Ribosomal_S21e
Homology
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|585112194|gb|EWM29622.1| (40s ribosomal protein s21 [Nannochloropsis gaditana])

HSP 1 Score: 166.392 bits (420), Expect = 2.674e-52
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSEQ 80
            MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSEQ
Sbjct:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSEQ 80          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|698807990|ref|XP_009837024.1| (hypothetical protein H257_11716 [Aphanomyces astaci] >gi|574108089|gb|ETV73598.1| hypothetical protein H257_11716 [Aphanomyces astaci])

HSP 1 Score: 111.694 bits (278), Expect = 1.153e-30
Identity = 50/79 (63.29%), Postives = 67/79 (84.81%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQN+AGQN+D+YIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY  G     A++GYIRAKGE DAA+T++V+KA+ +
Sbjct:    1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVDANGVYT-GQNDVYALSGYIRAKGEGDAALTDLVRKAEEK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|673044917|ref|XP_008876419.1| (hypothetical protein H310_11494 [Aphanomyces invadans] >gi|574467807|gb|ETV94828.1| hypothetical protein H310_11494 [Aphanomyces invadans])

HSP 1 Score: 109.383 bits (272), Expect = 1.023e-29
Identity = 49/79 (62.03%), Postives = 66/79 (83.54%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQN+AGQN+D+YIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY  G     A++GYIRAKGE D A+T++V+KA+ +
Sbjct:    1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVDANGVYT-GQNDVYALSGYIRAKGEGDHALTDLVRKAEEK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|1214655961|gb|OWY90307.1| (40S ribosomal protein S21 [Phytophthora megakarya])

HSP 1 Score: 108.997 bits (271), Expect = 1.536e-29
Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV  V+A+GV+  G+  T A+AGYIR  GE D A+TE+ ++AD++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDQAITELARQADAK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|301108027|ref|XP_002903095.1| (40S ribosomal protein S21 [Phytophthora infestans T30-4] >gi|675204677|ref|XP_008911223.1| hypothetical protein PPTG_15683 [Phytophthora parasitica INRA-310] >gi|262097467|gb|EEY55519.1| 40S ribosomal protein S21 [Phytophthora infestans T30-4] >gi|566015123|gb|ETI38034.1| hypothetical protein F443_16131 [Phytophthora parasitica P1569] >gi|567952576|gb|ETK78248.1| hypothetical protein L915_15677 [Phytophthora parasitica] >gi|567981240|gb|ETL31683.1| hypothetical protein L916_15572 [Phytophthora parasitica] >gi|568010730|gb|ETL84913.1| hypothetical protein L917_15395 [Phytophthora parasitica] >gi|568040610|gb|ETM38058.1| hypothetical protein L914_15529 [Phytophthora parasitica] >gi|568040648|gb|ETM38096.1| hypothetical protein L914_15527 [Phytophthora parasitica] >gi|568088593|gb|ETN03450.1| hypothetical protein PPTG_15683 [Phytophthora parasitica INRA-310] >gi|570318855|gb|ETO66803.1| hypothetical protein F444_16116 [Phytophthora parasitica P1976] >gi|570942667|gb|ETP07924.1| hypothetical protein F441_15960 [Phytophthora parasitica CJ01A1] >gi|570973287|gb|ETP35954.1| hypothetical protein F442_15984 [Phytophthora parasitica P10297] >gi|970629529|gb|KUF76764.1| 40S ribosomal protein S21 [Phytophthora nicotianae] >gi|970657947|gb|KUF95771.1| Voltage-gated potassium channel subunit beta-3 [Phytophthora nicotianae])

HSP 1 Score: 108.612 bits (270), Expect = 1.830e-29
Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV  V+A+GV+  G+  T A+AGYIR  GE D A+TE+ ++AD++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDMAITELARQADAK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|953501432|emb|CEG37433.1| (40s ribosomal protein s21 [Plasmopara halstedii])

HSP 1 Score: 108.227 bits (269), Expect = 2.461e-29
Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV  V+A+GV+  G+  T A+AGYIR  GE D A+TE+ ++AD++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTFALAGYIRHHGEGDIAITELSRQADAK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|1173960936|gb|OQS07017.1| (40S ribosomal protein S21 [Thraustotheca clavata])

HSP 1 Score: 108.227 bits (269), Expect = 3.420e-29
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQN AGQN+DLYIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY  G     A+AGYIR KGE D A+TE+ ++A+ +
Sbjct:    1 MQNSAGQNIDLYIPRKCSWTNRLLSAKDHASVQIAVAQVDANGVY-TGQNDVYALAGYIRNKGEGDMALTELTRRAEEK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|1173926618|gb|OQR80798.1| (40S ribosomal protein S21 [Achlya hypogyna])

HSP 1 Score: 107.071 bits (266), Expect = 7.788e-29
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQN  GQN+DLYIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY  G     A+AGYIR KGEAD A+TE+ ++A+ +
Sbjct:    1 MQNAQGQNIDLYIPRKCSWTNRILAAKDHASVQIAVAQVDANGVYT-GQNDVYALAGYIRNKGEADMALTELTRRAEEK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|669165148|ref|XP_008618136.1| (30S ribosomal protein S21e [Saprolegnia diclina VS20] >gi|813198600|ref|XP_012208883.1| 30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65] >gi|530730246|gb|EQC28488.1| 30S ribosomal protein S21e [Saprolegnia diclina VS20] >gi|641526027|gb|KDO20427.1| 30S ribosomal protein S21e [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 107.071 bits (266), Expect = 8.787e-29
Identity = 49/79 (62.03%), Postives = 63/79 (79.75%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQN AGQN+DLYIPRKCSWTNR++ +KDHA+VQ+ VA VDA+GVY  G     A+AGYIR KGE D A+TE+ ++A+ +
Sbjct:    1 MQNSAGQNIDLYIPRKCSWTNRILAAKDHASVQIAVAQVDANGVYT-GHNDVYALAGYIRNKGEGDHALTELARRAEEK 78          
BLAST of EWM29622.1 vs. NCBI_GenBank
Match: gi|695432058|ref|XP_009530842.1| (hypothetical protein PHYSODRAFT_286615 [Phytophthora sojae] >gi|348673594|gb|EGZ13413.1| hypothetical protein PHYSODRAFT_286615 [Phytophthora sojae])

HSP 1 Score: 106.301 bits (264), Expect = 1.537e-28
Identity = 46/79 (58.23%), Postives = 65/79 (82.28%), Query Frame = 0
Query:    1 MQNEAGQNVDLYIPRKCSWTNRVIHSKDHAAVQVNVANVDASGVYLQGDLKTIAMAGYIRAKGEADAAMTEMVKKADSE 79
            MQNEAGQ++D+YIPRKCSWTNR++ +KDHA+VQ+NV  V+A+GV+  G+  T A+AGYIR  GE D A+TE+ ++ D++
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNANGVFT-GESDTYALAGYIRHHGEGDQAITELARQTDAK 78          
The following BLAST results are available for this feature:
BLAST of EWM29622.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112194|gb|EWM29622.1|2.674e-52100.0040s ribosomal protein s21 [Nannochloropsis gaditan... [more]
gi|698807990|ref|XP_009837024.1|1.153e-3063.29hypothetical protein H257_11716 [Aphanomyces astac... [more]
gi|673044917|ref|XP_008876419.1|1.023e-2962.03hypothetical protein H310_11494 [Aphanomyces invad... [more]
gi|1214655961|gb|OWY90307.1|1.536e-2959.4940S ribosomal protein S21 [Phytophthora megakarya][more]
gi|301108027|ref|XP_002903095.1|1.830e-2959.4940S ribosomal protein S21 [Phytophthora infestans ... [more]
gi|953501432|emb|CEG37433.1|2.461e-2959.4940s ribosomal protein s21 [Plasmopara halstedii][more]
gi|1173960936|gb|OQS07017.1|3.420e-2962.0340S ribosomal protein S21 [Thraustotheca clavata][more]
gi|1173926618|gb|OQR80798.1|7.788e-2962.0340S ribosomal protein S21 [Achlya hypogyna][more]
gi|669165148|ref|XP_008618136.1|8.787e-2962.0330S ribosomal protein S21e [Saprolegnia diclina VS... [more]
gi|695432058|ref|XP_009530842.1|1.537e-2858.23hypothetical protein PHYSODRAFT_286615 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1051rna1051Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications