EWM20442.1, cds10233 (CDS) Nannochloropsis gaditana

Overview
NameEWM20442.1
Unique Namecds10233
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037268.1:23562..23642 -
Alignment locationKK037268.1:23133..23313 -
Alignment locationKK037268.1:22726..22979 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20442.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101072g1.10028.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:23562..23642 -
KK037268.1supercontigKK037268.1:23133..23313 -
KK037268.1supercontigKK037268.1:22726..22979 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20442.1 vs. NCBI_GenBank
Match: gi|585100063|gb|EWM20442.1| (hypothetical protein Naga_101072g1 [Nannochloropsis gaditana])

HSP 1 Score: 332.413 bits (851), Expect = 4.003e-115
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0 
Query:    1 MEAVSSSDDQAAASDEGYETEEEEAPEPGGESPWKRRNNDAGEVAGLGEGKGLEGENVEAKKRKREGCGGSTGERRARGVLDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLGGRNGEGEVGGVREKESVLGAASGERRGGEGKVERNKQERDKKTIARIKKLIKYRR 171
            MEAVSSSDDQAAASDEGYETEEEEAPEPGGESPWKRRNNDAGEVAGLGEGKGLEGENVEAKKRKREGCGGSTGERRARGVLDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLGGRNGEGEVGGVREKESVLGAASGERRGGEGKVERNKQERDKKTIARIKKLIKYRR
Sbjct:    1 MEAVSSSDDQAAASDEGYETEEEEAPEPGGESPWKRRNNDAGEVAGLGEGKGLEGENVEAKKRKREGCGGSTGERRARGVLDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLGGRNGEGEVGGVREKESVLGAASGERRGGEGKVERNKQERDKKTIARIKKLIKYRR 171
[Close]
BLAST of EWM20442.1 vs. NCBI_GenBank
Match: gi|553178336|ref|XP_005852542.1| (hypothetical protein NGA_0706000, partial [Nannochloropsis gaditana CCMP526] >gi|422295991|gb|EKU23290.1| hypothetical protein NGA_0706000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.485 bits (711), Expect = 3.614e-94
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:   28 PGGESPWKRRNNDAGEVAGLGEGKGLEGENVEAKKRKREGCGGSTGERRARGVLDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLGGRNGEGEVGGVREKESVLGAASGERRGGEGKVERNKQERDKKTIARIKKLIKYRR 171
            PGGESPWKRRNNDAGEVAGLGEGKGLEGENVEAK+RKREGCGGSTGERRARGVLDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLGGRNGEGEVGGVREKESVLGAASGERRGGEGKVERNKQERDKKTIARIKKLIKYRR
Sbjct:    1 PGGESPWKRRNNDAGEVAGLGEGKGLEGENVEAKRRKREGCGGSTGERRARGVLDVVRRQMTGELPSSHPASRNKAFALSTLPMEKLLGGRNGEGEVGGVREKESVLGAASGERRGGEGKVERNKQERDKKTIARIKKLIKYRR 144
The following BLAST results are available for this feature:
BLAST of EWM20442.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100063|gb|EWM20442.1|4.003e-115100.00hypothetical protein Naga_101072g1 [Nannochloropsi... [more]
gi|553178336|ref|XP_005852542.1|3.614e-9499.31hypothetical protein NGA_0706000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10264rna10264Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications