EWM20487.1, cds10187 (CDS) Nannochloropsis gaditana

Overview
NameEWM20487.1
Unique Namecds10187
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:42149..42224 -
Alignment locationKK037266.1:41902..41970 -
Alignment locationKK037266.1:41586..41659 -
Alignment locationKK037266.1:41109..41276 -
Alignment locationKK037266.1:40794..40882 -
Alignment locationKK037266.1:40392..40567 -
Alignment locationKK037266.1:40134..40180 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20487.1
Productwd repeat-containing protein 92
Orig transcript idgnl|cribi|Naga_100452g1.10233.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:42149..42224 -
KK037266.1supercontigKK037266.1:41902..41970 -
KK037266.1supercontigKK037266.1:41586..41659 -
KK037266.1supercontigKK037266.1:41109..41276 -
KK037266.1supercontigKK037266.1:40794..40882 -
KK037266.1supercontigKK037266.1:40392..40567 -
KK037266.1supercontigKK037266.1:40134..40180 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR015943WD40/YVTN_repeat-like_dom
Homology
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|585100149|gb|EWM20487.1| (wd repeat-containing protein 92 [Nannochloropsis gaditana])

HSP 1 Score: 475.707 bits (1223), Expect = 7.868e-170
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0
Query:    1 MLPPFPPPSFSPSCLPPLFLSPFSPCNASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232
            MLPPFPPPSFSPSCLPPLFLSPFSPCNASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL
Sbjct:    1 MLPPFPPPSFSPSCLPPLFLSPFSPCNASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|553177429|ref|XP_005852467.1| (wd domain-containing, partial [Nannochloropsis gaditana CCMP526] >gi|422296066|gb|EKU23365.1| wd domain-containing, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 260.381 bits (664), Expect = 2.732e-86
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0
Query:  103 MEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 229
            MEGRVAGTEDKPEGGVV SIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL
Sbjct:    1 MEGRVAGTEDKPEGGVVSSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 127          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|298711225|emb|CBJ32445.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 185.267 bits (469), Expect = 1.194e-53
Identity = 96/206 (46.60%), Postives = 129/206 (62.62%), Query Frame = 0
Query:   27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232
            NA  D +R + AGYDNGDVKLFDLRT ++R E NV NGVT L+FDR DI MNKLV+T LES F  + +R +                PE G  F+   +  H +TVW ARHLPQNRD+F+T GG GG  L++YHY + S + +     P    G     + LLN+R++S QP+V+FDW  ++ GLC ++ LDQ +RV++VT+L   
Sbjct:  173 NAYTDEDRCLTAGYDNGDVKLFDLRTQTMRWETNVKNGVTGLDFDRNDIEMNKLVVTTLESKFRTYDMRTQ---------------HPEAG--FAHLSEKAHKSTVWLARHLPQNRDLFMTGGGNGGFNLYKYHYPS-SRTKNDKENIPMGVVGK----VELLNSRVISSQPIVSFDWSPDREGLCCLSCLDQTVRVYIVTKLGKF 356          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|676384461|ref|XP_009035509.1| (hypothetical protein AURANDRAFT_58891 [Aureococcus anophagefferens] >gi|323453570|gb|EGB09441.1| hypothetical protein AURANDRAFT_58891 [Aureococcus anophagefferens])

HSP 1 Score: 184.496 bits (467), Expect = 2.884e-53
Identity = 104/221 (47.06%), Postives = 134/221 (60.63%), Query Frame = 0
Query:   15 LPPLFLSPFSPC------NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 229
            L P+   P   C      N+  D ERVVAAGYDNGDVKLFDLRT+++R E N  NGVT +EFDR DI MNKLV+T LES F ++ LR              T+   +G   F+   +  H ATVW ARHLPQNRDVF+T GG GG  L+ YHY    +++      P       PG + LLN+R++S QP+V+FDW  +K GL  ++ LDQ LRV++ T+L
Sbjct:  156 LEPVEGQPVRDCWCAAFGNSVGD-ERVVAAGYDNGDVKLFDLRTNAMRWETNASNGVTCVEFDRKDIEMNKLVVTTLESRFRVFDLR--------------TQHADDG---FAHCTEKAHKATVWLARHLPQNRDVFMTGGGNGGFNLYAYHYPKKRTATHKD-NAPVGV----PGTVELLNSRVISTQPIVSFDWSPDKEGLAVLSCLDQTLRVYICTKL 353          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|223993191|ref|XP_002286279.1| (hypothetical protein THAPSDRAFT_261002, partial [Thalassiosira pseudonana CCMP1335] >gi|220977594|gb|EED95920.1| hypothetical protein THAPSDRAFT_261002, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 182.956 bits (463), Expect = 9.145e-53
Identity = 93/203 (45.81%), Postives = 129/203 (63.55%), Query Frame = 0
Query:   27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 229
            N+ N  ER + AG+DNGDVKLFDLRT+++R E N  NGVTS++FDR DI MNK+V+T LES F  +  R + S               E G+ F  ++   H +TVW+A+HLPQNRD+F+T GG GG  +++YHY            TP        G++ LLN+R++S QP+V+FDW  ++ GLC +++LDQ LRV +VTRL
Sbjct:  175 NSYNYDERSILAGFDNGDVKLFDLRTNTMRWETNCKNGVTSVQFDRQDIEMNKIVVTTLESKFRCYDARTQHS---------------EDGLAFLSERA--HRSTVWTAKHLPQNRDIFMTGGGNGGFNIYKYHYPQNRIGKHAKDGTPVGV----IGSVELLNSRVISTQPIVSFDWSPDREGLCCMSALDQSLRVFIVTRL 356          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|115898439|ref|XP_786049.2| (PREDICTED: WD repeat-containing protein 92 [Strongylocentrotus purpuratus])

HSP 1 Score: 182.956 bits (463), Expect = 9.848e-53
Identity = 96/209 (45.93%), Postives = 126/209 (60.29%), Query Frame = 0
Query:   27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGAL---SLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232
            +A N+ +R VAAGYDNGD+KLFDLR  SLR E N+ NGV  LEFDR DI MNKLV + LE+ + L+ +R +      E                S+ +K  H +TVW ARHLPQNRDVF+TCGG G L LW+Y Y        P++     ++G   G +   S+L +  +S QP+  FDW  +K GLC  +S DQC+RV +VT+L TL
Sbjct:  171 HAHNNEDRCVAAGYDNGDIKLFDLRNMSLRWETNIKNGVCGLEFDRKDINMNKLVASTLEAKYHLFDMRTQHPKSGYE----------------SLSEKA-HKSTVWCARHLPQNRDVFMTCGGSGTLNLWKYEY--------PTSRVEEDSNGVQKGVMGSVSMLQSVGISTQPIAGFDWSPDKAGLCVCSSFDQCIRVLIVTKLGTL 354          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|813142468|ref|XP_012199301.1| (WD repeat-containing protein 92 [Saprolegnia parasitica CBS 223.65] >gi|641536226|gb|KDO30122.1| WD repeat-containing protein 92 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 181.8 bits (460), Expect = 2.785e-52
Identity = 94/202 (46.53%), Postives = 125/202 (61.88%), Query Frame = 0
Query:   27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTR 228
            N+ ND ER + AGYDNGDVK+FDLRT+S+R E NV NGV  ++FDR DI MNKL++T LES F ++ LR                  P  G  FS   +  H +TVW  R LPQNRD+F+T GG GG  L++YHY      SS +TT P        G + LLN+R+LS QP+V+ DW  ++ GLC +  LDQ +RV++V++
Sbjct:  173 NSYNDDERCIVAGYDNGDVKMFDLRTNSMRWETNVQNGVVGVQFDRKDIEMNKLLVTTLESKFRIYDLR---------------TFHPTKG--FSYMSEKAHKSTVWQGRFLPQNRDLFMTGGGNGGFNLYKYHYP-----SSRTTTDPDGILMGVGGTVELLNSRVLSTQPIVSMDWSPDREGLCVLTCLDQTVRVYIVSK 352          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|301128219|ref|XP_002999335.1| (WD domain-containing protein, putative [Phytophthora infestans T30-4] >gi|262110852|gb|EEY68904.1| WD domain-containing protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 179.104 bits (453), Expect = 3.012e-52
Identity = 92/205 (44.88%), Postives = 126/205 (61.46%), Query Frame = 0
Query:   27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSG---PDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTR 228
            N+ ND ER V  GYDNGD+K+FDLRT++LR E N  NGV +++FDR DI MNKL++T LES F ++ LR                  PE G  F+   +  H +T+W  R LPQNRD+F+T GG GG  L++YHY        P + T   + G      G + LLN+R+LS QP+V+ DW R++ GLC +A LDQ +RV++VT+
Sbjct:   82 NSYNDVERCVVGGYDNGDIKMFDLRTNTLRWETNCQNGVVNVQFDRKDIEMNKLLVTTLESKFRVYDLR---------------TFHPEQG--FACMTEKAHKSTIWQGRFLPQNRDLFMTGGGNGGFNLYKYHY--------PLSRTAKDSDGRLYGVCGTVELLNSRVLSTQPIVSMDWSRDREGLCTLACLDQTVRVYIVTK 261          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|669150096|ref|XP_008610610.1| (WD repeat-containing protein 92 [Saprolegnia diclina VS20] >gi|530737606|gb|EQC35848.1| WD repeat-containing protein 92 [Saprolegnia diclina VS20])

HSP 1 Score: 181.415 bits (459), Expect = 3.272e-52
Identity = 94/202 (46.53%), Postives = 125/202 (61.88%), Query Frame = 0
Query:   27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTR 228
            N+ ND ER + AGYDNGDVK+FDLRT+S+R E NV NGV  ++FDR DI MNKL++T LES F ++ LR                  P  G  FS   +  H +TVW  R LPQNRD+F+T GG GG  L++YHY      SS +TT P        G + LLN+R+LS QP+V+ DW  ++ GLC +  LDQ +RV++V++
Sbjct:  173 NSYNDDERCIVAGYDNGDVKMFDLRTNSMRWETNVQNGVVGVQFDRKDIEMNKLLVTTLESKFRIYDLR---------------TFHPTKG--FSYMSEKAHKSTVWQGRFLPQNRDLFMTGGGNGGFNLYKYHYP-----SSRTTTDPDGILMGVGGTVELLNSRVLSTQPIVSMDWSPDREGLCVLTCLDQTVRVYIVSK 352          
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|260830383|ref|XP_002610140.1| (hypothetical protein BRAFLDRAFT_216906 [Branchiostoma floridae] >gi|229295504|gb|EEN66150.1| hypothetical protein BRAFLDRAFT_216906 [Branchiostoma floridae])

HSP 1 Score: 181.415 bits (459), Expect = 4.084e-52
Identity = 100/209 (47.85%), Postives = 121/209 (57.89%), Query Frame = 0
Query:   27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPD---PGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232
            NA + +ER V AGYDNGD+KLFDLR  +LR E NV NGV S+EFDR DI MNK+V T LES F ++ +R +                P  G  F+   +  H +TVW ARHLPQNRDVF+TCGG G L LWQY Y        P     +   G D    G +SLL    LS QP+  FDW  +K GLC   + DQCLRV +VT+L  L
Sbjct:  172 NAYSPTERCVCAGYDNGDIKLFDLRNMALRWETNVKNGVCSVEFDRKDIDMNKMVATTLESKFHVFDMRTQ---------------HPTKG--FASLSEKAHKSTVWLARHLPQNRDVFMTCGGSGTLNLWQYSY--------PDKRVKADDKGVDMGVAGTVSLLQNVTLSTQPIAGFDWSPDKVGLCVCTAFDQCLRVLIVTKLNRL 355          
The following BLAST results are available for this feature:
BLAST of EWM20487.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100149|gb|EWM20487.1|7.868e-170100.00wd repeat-containing protein 92 [Nannochloropsis g... [more]
gi|553177429|ref|XP_005852467.1|2.732e-8699.21wd domain-containing, partial [Nannochloropsis gad... [more]
gi|298711225|emb|CBJ32445.1|1.194e-5346.60conserved unknown protein [Ectocarpus siliculosus][more]
gi|676384461|ref|XP_009035509.1|2.884e-5347.06hypothetical protein AURANDRAFT_58891 [Aureococcus... [more]
gi|223993191|ref|XP_002286279.1|9.145e-5345.81hypothetical protein THAPSDRAFT_261002, partial [T... [more]
gi|115898439|ref|XP_786049.2|9.848e-5345.93PREDICTED: WD repeat-containing protein 92 [Strong... [more]
gi|813142468|ref|XP_012199301.1|2.785e-5246.53WD repeat-containing protein 92 [Saprolegnia paras... [more]
gi|301128219|ref|XP_002999335.1|3.012e-5244.88WD domain-containing protein, putative [Phytophtho... [more]
gi|669150096|ref|XP_008610610.1|3.272e-5246.53WD repeat-containing protein 92 [Saprolegnia dicli... [more]
gi|260830383|ref|XP_002610140.1|4.084e-5247.85hypothetical protein BRAFLDRAFT_216906 [Branchiost... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10218rna10218Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications