EWM29643.1, cds1018 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|585112215|gb|EWM29643.1| (mbr-related protein [Nannochloropsis gaditana]) HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0 Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0
Query: 1 MEEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASSTSIWGYLKRAFSSISPGKSKDNKLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTKKG 419
MEEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASSTSIWGYLKRAFSSISPGKSKDNKLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTKKG
Sbjct: 1 MEEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASSTSIWGYLKRAFSSISPGKSKDNKLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTKKG 419
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|1004148590|gb|KXZ56562.1| (hypothetical protein GPECTOR_1g504 [Gonium pectorale]) HSP 1 Score: 128.257 bits (321), Expect = 7.455e-32 Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 0
Query: 276 LRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVW-RLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSI 404
L D WY + LKKP WTP VFPLVW+PLKL+Q+ AL LVW + AL P+ +H+ LG+ WN+VFFG++++ L MY F+AS+A + AFY V P AAYLMVPT +WV IAT LN+ I
Sbjct: 34 LVPTFDPTWY-KALKKPKWTPPNYVFPLVWIPLKLMQSVALWLVWTKAPSARALAFPLTAMAVHMGLGNWWNVVFFGQRKLKESLPWMYTFWASIAVTAAAFYPVSPAAAYLMVPTQIWVSIATKLNWDI 162
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|159490632|ref|XP_001703277.1| (TspO/MBR-related protein [Chlamydomonas reinhardtii] >gi|158280201|gb|EDP05959.1| TspO/MBR-related protein [Chlamydomonas reinhardtii]) HSP 1 Score: 125.561 bits (314), Expect = 9.810e-31 Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = 0
Query: 276 LRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVW-RLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSI 404
L MD WY + LKKP+WTP VFPLVW+PLK +Q+ AL LV + +L +P+ F +H+ LG+ WN+VFFG +++ L MYAF+ S+AAS AFY + P AAYLM+PT VWV IAT LN+ I
Sbjct: 34 LVPTMDPTWY-KSLKKPSWTPPNYVFPLVWIPLKTMQSVALWLVCSKAKSVSSLALPLAAFGIHMFLGNWWNVVFFGRRQLEGSLPWMYAFWGSIAASAAAFYPISPVAAYLMLPTQVWVTIATKLNWDI 162
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|545367582|ref|XP_005648605.1| (TspO/MBR-related protein [Coccomyxa subellipsoidea C-169] >gi|384250582|gb|EIE24061.1| TspO/MBR-related protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 119.398 bits (298), Expect = 2.380e-28 Identity = 62/127 (48.82%), Postives = 87/127 (68.50%), Query Frame = 0
Query: 284 WYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLL--DRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLN 408
WY + LKKP+W P VFP VW+PLK+LQ+AAL LVW+ D+ ++++P+ +F +H LG+ WN+VFFG + + L M AF+ S+AA+ ++FYSV P A L+ PT +WV IA LNY I LN
Sbjct: 51 WYPK-LKKPSWNPPSWVFPAVWIPLKILQSAALWLVWKSAGADKASISIPLAIFGVHALLGNQWNVVFFGRRDMPGSLKWMGAFWLSVAATAFSFYSVNPLAGLLVSPTQIWVTIAAKLNYDIVKLN 176
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|926795311|ref|XP_013905960.1| (tryptophan-rich sensory protein [Monoraphidium neglectum] >gi|761977182|gb|KIZ06941.1| tryptophan-rich sensory protein [Monoraphidium neglectum]) HSP 1 Score: 115.931 bits (289), Expect = 4.935e-27 Identity = 65/129 (50.39%), Postives = 83/129 (64.34%), Query Frame = 0
Query: 281 DMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRD-ALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLN 408
D +Y VLKKP WTP VFP VW+PLKLLQ+ +L LV + + AL +P++LF HL LG+ WN VFFG++++ L VM AF+ S+A S AF + P A+ L PT VWV IA LNY I LN
Sbjct: 44 DNTYYKEVLKKPNWTPPNWVFPAVWIPLKLLQSVSLWLVIKKAPSNQALTLPLLLFGTHLALGNYWNWVFFGQRQLKPSLKVMGAFWLSIAGSIAAFNPISPLASLLFAPTQVWVTIAAKLNYDIVKLN 172
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|544217464|ref|XP_005538876.1| (similar to carotenoid biosynthesis protein, crtK gene product [Cyanidioschyzon merolae strain 10D] >gi|449019438|dbj|BAM82840.1| similar to carotenoid biosynthesis protein, crtK gene product [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 112.079 bits (279), Expect = 2.732e-25 Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 0
Query: 285 YHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALN--VPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLN 408
++R L+KP + P VFP VW+PLK LQT AL LVW D L L+++H++LG LWN +FFG+ +I L M FYA+LA S +++V P AA L+ PT VW IA +LNY W LN
Sbjct: 82 WYRSLRKPWFHPPNWVFPAVWIPLKALQTGALYLVWTSEDVSLLKRLTATGLYVIHISLGTLWNHLFFGKHKIRKSLYAMGGFYATLAGSIGMYWTVNPTAAALLAPTQVWATIAAALNYQSWALN 207
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|545701323|ref|XP_005702996.1| (putative carotenoid biosynthesis protein, crtK-like protein [Galdieria sulphuraria] >gi|452819417|gb|EME26476.1| putative carotenoid biosynthesis protein, crtK-like protein [Galdieria sulphuraria]) HSP 1 Score: 109.383 bits (272), Expect = 3.065e-24 Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = 0
Query: 283 GWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTP 411
WY + KKP W P +FP VW+PLK+LQ+A+L L+WR + D VP F++HL+ G+LWN +FF + + L M F+ SLA++ +AF+ V AA L+ PT +W IA +LN+ + LN P
Sbjct: 74 SWYQSI-KKPVWQPPNWLFPAVWIPLKVLQSASLFLLWRK-EGDFPIVPSAAFVVHLSFGNLWNYLFFARRNMFASLFAMGGFWVSLASTIFAFHKVDSYAALLLAPTQIWATIAAALNFHTYWLNRRP 200
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|552824935|ref|XP_005846707.1| (hypothetical protein CHLNCDRAFT_24614, partial [Chlorella variabilis] >gi|307106359|gb|EFN54605.1| hypothetical protein CHLNCDRAFT_24614, partial [Chlorella variabilis]) HSP 1 Score: 105.145 bits (261), Expect = 1.387e-23 Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 0
Query: 285 YHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWR-LLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSI 404
++ L KP WTP VFP VW+PLK+LQ+ A LVWR L +P+ LF+ HL LG WN+VFFG ++ + M AF+ S+AAS AF V P A L PT +WV IA LN+ I
Sbjct: 1 WYEALAKPAWTPPNWVFPAVWIPLKVLQSVAAWLVWRSAPTTQQLYLPLALFVAHLFLGSWWNVVFFGRHQMQQSVKWMAAFWCSIAASIAAFSQVSPLAGLLFAPTQLWVTIAAKLNWDI 121
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|299470525|emb|CBN78516.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 104.76 bits (260), Expect = 9.232e-22 Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 0
Query: 271 EKVGFLRTQMDMG--WYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVW-RLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLN 401
EK + +G WY L+KP W P VFP++W+PLK+LQ A +W +L R + +PVV++ ++ +LGD+WN VFF +R+ G V+ +Y +L A F+ V RA YL PTA WV IAT L
Sbjct: 158 EKSQLFNIDVPIGKDWYTN-LRKPRWNPPNWVFPIMWIPLKILQVFACYEMWDKLETRSCVALPVVVYTVYKSLGDVWNKVFFERRRLKMGTVVISLYYLTLLAGIKVFFDVSDRAGYLFAPTAAWVTIATCLQ 290
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|495549492|ref|WP_008274071.1| (hypothetical protein [Cyanothece sp. CCY0110] >gi|126622217|gb|EAZ92924.1| hypothetical protein CY0110_22547 [Cyanothece sp. CCY0110]) HSP 1 Score: 100.138 bits (248), Expect = 1.410e-20 Identity = 49/135 (36.30%), Postives = 85/135 (62.96%), Query Frame = 0
Query: 285 YHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSV--MYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTK 417
Y +V++ P W P P+ FP++W+ + +L+ + VLVW+ + + L VP+++F++HL LGD WN +F E R+G + V M + +++ + + + +VL A L+VP+ +W+ +A L YSIW LNG +P K
Sbjct: 109 YQQVIR-PNWAPPPLAFPIIWMTIGVLRVISSVLVWQAVGENFLAVPLIVFVIHLALGDTWNTIFTVEGRLGVAVPVVIMGPWLSAIVVTVFYWQTVL-LAGLLLVPSVIWITVACVLVYSIWRLNGCEPWYPLK 241 The following BLAST results are available for this feature:
BLAST of EWM29643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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