EWM29643.1, cds1018 (CDS) Nannochloropsis gaditana

Overview
NameEWM29643.1
Unique Namecds1018
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:982547..983806 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29643.1
Productmbr-related protein
Orig transcript idgnl|cribi|Naga_100050g42.6866.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:982547..983806 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004307TspO_MBR
Homology
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|585112215|gb|EWM29643.1| (mbr-related protein [Nannochloropsis gaditana])

HSP 1 Score: 852.818 bits (2202), Expect = 0.000e+0
Identity = 419/419 (100.00%), Postives = 419/419 (100.00%), Query Frame = 0
Query:    1 MEEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASSTSIWGYLKRAFSSISPGKSKDNKLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTKKG 419
            MEEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASSTSIWGYLKRAFSSISPGKSKDNKLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTKKG
Sbjct:    1 MEEDEDLVGAARVSYGSDGQKGLRMDVDLDVNELTSHLGPAAKPLVAVARAIQSTIFYTAPVLALAGLLTQIAGITCSRYTKTQADKKSNKQGKASRTRDPKKSTVKEEQVRRDAKQRQDRLEKEEKRRQSKEQDQRQRREAKGKMLAKAKKPHASSTSIWGYLKRAFSSISPGKSKDNKLAFVTRTKGGALLGWNTGGPSTRKSKDGEILDWNAFTVLSLRAACQWALLVAVAAAVGRGVEAAGASRKLNPRLLISLDVFTASSAVFLSEKVGFLRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTKKG 419          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|1004148590|gb|KXZ56562.1| (hypothetical protein GPECTOR_1g504 [Gonium pectorale])

HSP 1 Score: 128.257 bits (321), Expect = 7.455e-32
Identity = 67/130 (51.54%), Postives = 86/130 (66.15%), Query Frame = 0
Query:  276 LRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVW-RLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSI 404
            L    D  WY + LKKP WTP   VFPLVW+PLKL+Q+ AL LVW +     AL  P+    +H+ LG+ WN+VFFG++++   L  MY F+AS+A +  AFY V P AAYLMVPT +WV IAT LN+ I
Sbjct:   34 LVPTFDPTWY-KALKKPKWTPPNYVFPLVWIPLKLMQSVALWLVWTKAPSARALAFPLTAMAVHMGLGNWWNVVFFGQRKLKESLPWMYTFWASIAVTAAAFYPVSPAAAYLMVPTQIWVSIATKLNWDI 162          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|159490632|ref|XP_001703277.1| (TspO/MBR-related protein [Chlamydomonas reinhardtii] >gi|158280201|gb|EDP05959.1| TspO/MBR-related protein [Chlamydomonas reinhardtii])

HSP 1 Score: 125.561 bits (314), Expect = 9.810e-31
Identity = 67/130 (51.54%), Postives = 88/130 (67.69%), Query Frame = 0
Query:  276 LRTQMDMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVW-RLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSI 404
            L   MD  WY + LKKP+WTP   VFPLVW+PLK +Q+ AL LV  +     +L +P+  F +H+ LG+ WN+VFFG +++   L  MYAF+ S+AAS  AFY + P AAYLM+PT VWV IAT LN+ I
Sbjct:   34 LVPTMDPTWY-KSLKKPSWTPPNYVFPLVWIPLKTMQSVALWLVCSKAKSVSSLALPLAAFGIHMFLGNWWNVVFFGRRQLEGSLPWMYAFWGSIAASAAAFYPISPVAAYLMLPTQVWVTIATKLNWDI 162          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|545367582|ref|XP_005648605.1| (TspO/MBR-related protein [Coccomyxa subellipsoidea C-169] >gi|384250582|gb|EIE24061.1| TspO/MBR-related protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 119.398 bits (298), Expect = 2.380e-28
Identity = 62/127 (48.82%), Postives = 87/127 (68.50%), Query Frame = 0
Query:  284 WYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLL--DRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLN 408
            WY + LKKP+W P   VFP VW+PLK+LQ+AAL LVW+    D+ ++++P+ +F +H  LG+ WN+VFFG + +   L  M AF+ S+AA+ ++FYSV P A  L+ PT +WV IA  LNY I  LN
Sbjct:   51 WYPK-LKKPSWNPPSWVFPAVWIPLKILQSAALWLVWKSAGADKASISIPLAIFGVHALLGNQWNVVFFGRRDMPGSLKWMGAFWLSVAATAFSFYSVNPLAGLLVSPTQIWVTIAAKLNYDIVKLN 176          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|926795311|ref|XP_013905960.1| (tryptophan-rich sensory protein [Monoraphidium neglectum] >gi|761977182|gb|KIZ06941.1| tryptophan-rich sensory protein [Monoraphidium neglectum])

HSP 1 Score: 115.931 bits (289), Expect = 4.935e-27
Identity = 65/129 (50.39%), Postives = 83/129 (64.34%), Query Frame = 0
Query:  281 DMGWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRD-ALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLN 408
            D  +Y  VLKKP WTP   VFP VW+PLKLLQ+ +L LV +    + AL +P++LF  HL LG+ WN VFFG++++   L VM AF+ S+A S  AF  + P A+ L  PT VWV IA  LNY I  LN
Sbjct:   44 DNTYYKEVLKKPNWTPPNWVFPAVWIPLKLLQSVSLWLVIKKAPSNQALTLPLLLFGTHLALGNYWNWVFFGQRQLKPSLKVMGAFWLSIAGSIAAFNPISPLASLLFAPTQVWVTIAAKLNYDIVKLN 172          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|544217464|ref|XP_005538876.1| (similar to carotenoid biosynthesis protein, crtK gene product [Cyanidioschyzon merolae strain 10D] >gi|449019438|dbj|BAM82840.1| similar to carotenoid biosynthesis protein, crtK gene product [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 112.079 bits (279), Expect = 2.732e-25
Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 0
Query:  285 YHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALN--VPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLN 408
            ++R L+KP + P   VFP VW+PLK LQT AL LVW   D   L       L+++H++LG LWN +FFG+ +I   L  M  FYA+LA S   +++V P AA L+ PT VW  IA +LNY  W LN
Sbjct:   82 WYRSLRKPWFHPPNWVFPAVWIPLKALQTGALYLVWTSEDVSLLKRLTATGLYVIHISLGTLWNHLFFGKHKIRKSLYAMGGFYATLAGSIGMYWTVNPTAAALLAPTQVWATIAAALNYQSWALN 207          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|545701323|ref|XP_005702996.1| (putative carotenoid biosynthesis protein, crtK-like protein [Galdieria sulphuraria] >gi|452819417|gb|EME26476.1| putative carotenoid biosynthesis protein, crtK-like protein [Galdieria sulphuraria])

HSP 1 Score: 109.383 bits (272), Expect = 3.065e-24
Identity = 55/129 (42.64%), Postives = 80/129 (62.02%), Query Frame = 0
Query:  283 GWYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTP 411
             WY  + KKP W P   +FP VW+PLK+LQ+A+L L+WR  + D   VP   F++HL+ G+LWN +FF  + +   L  M  F+ SLA++ +AF+ V   AA L+ PT +W  IA +LN+  + LN  P
Sbjct:   74 SWYQSI-KKPVWQPPNWLFPAVWIPLKVLQSASLFLLWRK-EGDFPIVPSAAFVVHLSFGNLWNYLFFARRNMFASLFAMGGFWVSLASTIFAFHKVDSYAALLLAPTQIWATIAAALNFHTYWLNRRP 200          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|552824935|ref|XP_005846707.1| (hypothetical protein CHLNCDRAFT_24614, partial [Chlorella variabilis] >gi|307106359|gb|EFN54605.1| hypothetical protein CHLNCDRAFT_24614, partial [Chlorella variabilis])

HSP 1 Score: 105.145 bits (261), Expect = 1.387e-23
Identity = 57/121 (47.11%), Postives = 73/121 (60.33%), Query Frame = 0
Query:  285 YHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWR-LLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSI 404
            ++  L KP WTP   VFP VW+PLK+LQ+ A  LVWR       L +P+ LF+ HL LG  WN+VFFG  ++   +  M AF+ S+AAS  AF  V P A  L  PT +WV IA  LN+ I
Sbjct:    1 WYEALAKPAWTPPNWVFPAVWIPLKVLQSVAAWLVWRSAPTTQQLYLPLALFVAHLFLGSWWNVVFFGRHQMQQSVKWMAAFWCSIAASIAAFSQVSPLAGLLFAPTQLWVTIAAKLNWDI 121          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|299470525|emb|CBN78516.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 104.76 bits (260), Expect = 9.232e-22
Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 0
Query:  271 EKVGFLRTQMDMG--WYHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVW-RLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSVMYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLN 401
            EK       + +G  WY   L+KP W P   VFP++W+PLK+LQ  A   +W +L  R  + +PVV++ ++ +LGD+WN VFF  +R+  G  V+  +Y +L A    F+ V  RA YL  PTA WV IAT L 
Sbjct:  158 EKSQLFNIDVPIGKDWYTN-LRKPRWNPPNWVFPIMWIPLKILQVFACYEMWDKLETRSCVALPVVVYTVYKSLGDVWNKVFFERRRLKMGTVVISLYYLTLLAGIKVFFDVSDRAGYLFAPTAAWVTIATCLQ 290          
BLAST of EWM29643.1 vs. NCBI_GenBank
Match: gi|495549492|ref|WP_008274071.1| (hypothetical protein [Cyanothece sp. CCY0110] >gi|126622217|gb|EAZ92924.1| hypothetical protein CY0110_22547 [Cyanothece sp. CCY0110])

HSP 1 Score: 100.138 bits (248), Expect = 1.410e-20
Identity = 49/135 (36.30%), Postives = 85/135 (62.96%), Query Frame = 0
Query:  285 YHRVLKKPTWTPRPIVFPLVWVPLKLLQTAALVLVWRLLDRDALNVPVVLFLLHLTLGDLWNLVFFGEKRIGFGLSV--MYAFYASLAASCYAFYSVLPRAAYLMVPTAVWVFIATSLNYSIWLLNGTPTRFPTK 417
            Y +V++ P W P P+ FP++W+ + +L+  + VLVW+ +  + L VP+++F++HL LGD WN +F  E R+G  + V  M  + +++  + + + +VL  A  L+VP+ +W+ +A  L YSIW LNG    +P K
Sbjct:  109 YQQVIR-PNWAPPPLAFPIIWMTIGVLRVISSVLVWQAVGENFLAVPLIVFVIHLALGDTWNTIFTVEGRLGVAVPVVIMGPWLSAIVVTVFYWQTVL-LAGLLLVPSVIWITVACVLVYSIWRLNGCEPWYPLK 241          
The following BLAST results are available for this feature:
BLAST of EWM29643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112215|gb|EWM29643.1|0.000e+0100.00mbr-related protein [Nannochloropsis gaditana][more]
gi|1004148590|gb|KXZ56562.1|7.455e-3251.54hypothetical protein GPECTOR_1g504 [Gonium pectora... [more]
gi|159490632|ref|XP_001703277.1|9.810e-3151.54TspO/MBR-related protein [Chlamydomonas reinhardti... [more]
gi|545367582|ref|XP_005648605.1|2.380e-2848.82TspO/MBR-related protein [Coccomyxa subellipsoidea... [more]
gi|926795311|ref|XP_013905960.1|4.935e-2750.39tryptophan-rich sensory protein [Monoraphidium neg... [more]
gi|544217464|ref|XP_005538876.1|2.732e-2546.83similar to carotenoid biosynthesis protein, crtK g... [more]
gi|545701323|ref|XP_005702996.1|3.065e-2442.64putative carotenoid biosynthesis protein, crtK-lik... [more]
gi|552824935|ref|XP_005846707.1|1.387e-2347.11hypothetical protein CHLNCDRAFT_24614, partial [Ch... [more]
gi|299470525|emb|CBN78516.1|9.232e-2241.04conserved unknown protein [Ectocarpus siliculosus][more]
gi|495549492|ref|WP_008274071.1|1.410e-2036.30hypothetical protein [Cyanothece sp. CCY0110] >gi|... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1019rna1019Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications