EWM20559.1, cds10115 (CDS) Nannochloropsis gaditana

Overview
NameEWM20559.1
Unique Namecds10115
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037263.1:62604..62637 -
Alignment locationKK037263.1:62428..62504 -
Alignment locationKK037263.1:62149..62202 -
Alignment locationKK037263.1:62021..62107 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20559.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100728g1.1134.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:62604..62637 -
KK037263.1supercontigKK037263.1:62428..62504 -
KK037263.1supercontigKK037263.1:62149..62202 -
KK037263.1supercontigKK037263.1:62021..62107 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20559.1 vs. NCBI_GenBank
Match: gi|585100266|gb|EWM20559.1| (hypothetical protein Naga_100728g1 [Nannochloropsis gaditana])

HSP 1 Score: 170.629 bits (431), Expect = 8.012e-54
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MLLPASLFPFLHISQTSSKLVNDSKKYKWGAKKLSMMALYHQYAPFLLMGGIALLCLAVICVRSHPAYFAKTSELYESANLRM 83
            MLLPASLFPFLHISQTSSKLVNDSKKYKWGAKKLSMMALYHQYAPFLLMGGIALLCLAVICVRSHPAYFAKTSELYESANLRM
Sbjct:    1 MLLPASLFPFLHISQTSSKLVNDSKKYKWGAKKLSMMALYHQYAPFLLMGGIALLCLAVICVRSHPAYFAKTSELYESANLRM 83          
BLAST of EWM20559.1 vs. NCBI_GenBank
Match: gi|855308681|ref|XP_012896597.1| (uncharacterized protein [Blastocystis hominis] >gi|300121975|emb|CBK22549.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 54.6842 bits (130), Expect = 2.861e-8
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 0
Query:   12 HISQTSSKLVNDSKKYKWGAKKLSMMALYHQYAPFLLMGGIALLCL 57
            H++ TS +L++DSKKYKWGAKKL+ M +  +YAP   + G  L+ +
Sbjct:   17 HVTATSEQLMDDSKKYKWGAKKLNYMTMLRKYAPLAFIVGFVLIVV 62          
BLAST of EWM20559.1 vs. NCBI_GenBank
Match: gi|855307234|ref|XP_012896014.1| (uncharacterized protein [Blastocystis hominis] >gi|300121447|emb|CBK21966.2| unnamed protein product [Blastocystis hominis])

HSP 1 Score: 55.4546 bits (132), Expect = 2.311e-7
Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 0
Query:   12 HISQTSSKLVNDSKKYKWGAKKLSMMALYHQYAPFLLMGGIALLCL 57
            H++ TS +L++DSKKYKWGAKKL+ M +  +YAP   + G  L+ +
Sbjct:  174 HVTATSEQLMDDSKKYKWGAKKLNYMTMLRKYAPLAFIVGFVLIVV 219          
The following BLAST results are available for this feature:
BLAST of EWM20559.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100266|gb|EWM20559.1|8.012e-54100.00hypothetical protein Naga_100728g1 [Nannochloropsi... [more]
gi|855308681|ref|XP_012896597.1|2.861e-847.83uncharacterized protein [Blastocystis hominis] >gi... [more]
gi|855307234|ref|XP_012896014.1|2.311e-747.83uncharacterized protein [Blastocystis hominis] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10146rna10146Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications