EWM20566.1, cds10107 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|585100280|gb|EWM20566.1| (Cobalamin biosynthesis CobW [Nannochloropsis gaditana]) HSP 1 Score: 398.667 bits (1023), Expect = 2.111e-140 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 198 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD Sbjct: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 198
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|553193518|ref|XP_005855792.1| (cobalamin synthesis protein p47k [Nannochloropsis gaditana CCMP526] >gi|422293268|gb|EKU20568.1| cobalamin synthesis protein p47k [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 406.757 bits (1044), Expect = 5.947e-136 Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 198 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDV REGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEP+WGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD Sbjct: 548 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVGREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPVWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 745
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|654563086|ref|WP_028030418.1| (GTP-binding protein [Gemmobacter nectariphilus]) HSP 1 Score: 121.709 bits (304), Expect = 2.323e-29 Identity = 74/178 (41.57%), Postives = 97/178 (54.49%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAE-LRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREG 177 +PET+E+G++SF YR RRPF PARLH +L GPL +IR KG+ WLAT + +SLAG++ S T W AAI WP+ + +RA WE WGDRRQE+VFIG M++A + +LDACL+ +R TP WA + DPF R G Sbjct: 252 VPETEEYGISSFVYRARRPFDPARLHGVL--------------------------NGPLPGVIRAKGHFWLATRPNWVAEFSLAGAISSVT--PLGGWWAAIPQDRWPQDPAMLDKMRAQWENPWGDRRQELVFIGAGMDRAAITASLDACLV---PASRFTPEAWAHL-ADPFPRWG 397
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|749813227|ref|WP_040292060.1| (GTP-binding protein [Acetobacteraceae bacterium AT-5844]) HSP 1 Score: 119.398 bits (298), Expect = 1.664e-28 Identity = 71/174 (40.80%), Postives = 96/174 (55.17%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWP-ETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173 +PE++E+G+TSF +R RRP HPAR HA + GE L ++R KG+ WLA+ M W LAGS+ A W AA DP WP + AE+R +W+ +GDRRQE+VFIG+ M++A + LDACLLT+EE+ R WA + DPF Sbjct: 252 LPESEEYGITSFVWRARRPLHPARFHAFINGE--------------------------LSGVVRAKGFFWLASRMPWAGSWQLAGSIGRSEAAGH--WWAATDPSRWPADPQWRAEVRRNWQEPFGDRRQEVVFIGIGMDEAALRRELDACLLTDEEL-RKGQRAWARL-PDPF 395
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|363713012|gb|EHL96671.1| (CobW/P47K family protein [Acetobacteraceae bacterium AT-5844]) HSP 1 Score: 119.013 bits (297), Expect = 2.012e-28 Identity = 71/174 (40.80%), Postives = 96/174 (55.17%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWP-ETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173 +PE++E+G+TSF +R RRP HPAR HA + GE L ++R KG+ WLA+ M W LAGS+ A W AA DP WP + AE+R +W+ +GDRRQE+VFIG+ M++A + LDACLLT+EE+ R WA + DPF Sbjct: 256 LPESEEYGITSFVWRARRPLHPARFHAFINGE--------------------------LSGVVRAKGFFWLASRMPWAGSWQLAGSIGRSEAAGH--WWAATDPSRWPADPQWRAEVRRNWQEPFGDRRQEVVFIGIGMDEAALRRELDACLLTDEEL-RKGQRAWARL-PDPF 399
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1105009970|ref|WP_071798950.1| (GTP-binding protein [Natronohydrobacter thiooxidans]) HSP 1 Score: 117.087 bits (292), Expect = 1.023e-27 Identity = 74/178 (41.57%), Postives = 97/178 (54.49%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTA-AELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREG 177 +PET+E+GV+SF YR RRPFHPA++H LL GPL +IR KG+ WLAT + +SLAG++ S W AAI WP+ A A++R +W WGDRRQE+VFIG M++ + ALDACL+T + TP WA + DPF R G Sbjct: 253 VPETEEYGVSSFVYRARRPFHPAKVHDLL--------------------------NGPLPGVIRAKGHFWLATRPNWVAEFSLAGAISSVA--PLGGWWAAIPQERWPDHPEAQAKMRENWVEPWGDRRQELVFIGAGMDRDALTAALDACLITADS---FTPEAWAGL-ADPFPRWG 398
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1184649743|ref|WP_085210192.1| (4-hydroxytetrahydrobiopterin dehydratase [Methylocaldum sp. 175]) HSP 1 Score: 117.087 bits (292), Expect = 1.127e-27 Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSV--HSFTANEEEKWLAAIDPVEWPETL-TAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMT 158 +PET E+G+ SF YR RRPFHP R HA L EGG + GT L+R KG+ WLA+ H WS AG V H+ +W A++ P +WP+ T A +RA W +GDRRQE+VFIG ++++A++ LDACLLT+ E+ Sbjct: 254 VPETQEYGIASFAYRARRPFHPRRFHAFL---------HEGGWDNGT--------------LLRSKGFFWLASRPDHAGGWSQAGGVMRHALAG----RWWASVPPEDWPDDPETLAAIRAEWAEPYGDRRQELVFIGQNLDEARLRAELDACLLTDAELA 387
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1182709603|emb|SMF93530.1| (GTPase, G3E family [Methylocaldum sp. 175]) HSP 1 Score: 117.087 bits (292), Expect = 1.234e-27 Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSV--HSFTANEEEKWLAAIDPVEWPETL-TAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMT 158 +PET E+G+ SF YR RRPFHP R HA L EGG + GT L+R KG+ WLA+ H WS AG V H+ +W A++ P +WP+ T A +RA W +GDRRQE+VFIG ++++A++ LDACLLT+ E+ Sbjct: 257 VPETQEYGIASFAYRARRPFHPRRFHAFL---------HEGGWDNGT--------------LLRSKGFFWLASRPDHAGGWSQAGGVMRHALAG----RWWASVPPEDWPDDPETLAAIRAEWAEPYGDRRQELVFIGQNLDEARLRAELDACLLTDAELA 390
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1099402123|emb|SFH85339.1| (GTPase, G3E family [Albimonas pacifica]) HSP 1 Score: 115.931 bits (289), Expect = 3.040e-27 Identity = 71/174 (40.80%), Postives = 91/174 (52.30%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETL-TAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173 +PET+E+GVTSF YR RRPFHP R+HA L GPL IR KG+ W+AT Q + +SLAG++ S W A++ WPE + A W+ WGDRRQE+VFIGV +++A++ LDA LLTE E TP W DPF Sbjct: 253 VPETEEYGVTSFVYRARRPFHPERIHAAL--------------------------NGPLPGAIRAKGHFWIATRPQWVAEFSLAGAISS--VRPLGGWWASVPRDRWPEHPESVARTLERWQDPWGDRRQELVFIGVGLDRARITGTLDAALLTEAEAPAFTPEAW-RALPDPF 397
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1005221203|gb|KYF88143.1| (hypothetical protein BE17_35430 [Sorangium cellulosum]) HSP 1 Score: 115.546 bits (288), Expect = 5.850e-27 Identity = 72/174 (41.38%), Postives = 90/174 (51.72%), Query Frame = 0 Query: 1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLT-AAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173 +PET+E+G+ SF YR RP HP RL + G D ++R KG+ WLAT M WS AG SF A +W AA+ +WPE A L A W+P WGDRRQEIVFIGV M + ++ LDACLLT EEM + P W+ + DPF Sbjct: 250 VPETEEYGIESFVYRAARPMHPERLWDFIHGATAWD------------------------GVLRSKGFFWLATRMDITGAWSQAGGAASFEA--AGRWYAALPEEQWPEDAEERAALDAAWDPAWGDRRQEIVFIGVEMARDELTRGLDACLLTREEMA-LGPSGWSRLN-DPF 395 The following BLAST results are available for this feature:
BLAST of EWM20566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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