EWM20566.1, cds10107 (CDS) Nannochloropsis gaditana

Overview
NameEWM20566.1
Unique Namecds10107
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037263.1:47552..48148 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20566.1
ProductCobalamin biosynthesis CobW
Orig transcript idgnl|cribi|Naga_100599g1.9557.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:47552..48148 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011629Cbl_biosynth_CobW-like_C
Homology
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|585100280|gb|EWM20566.1| (Cobalamin biosynthesis CobW [Nannochloropsis gaditana])

HSP 1 Score: 398.667 bits (1023), Expect = 2.111e-140
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 198
            MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD
Sbjct:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 198          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|553193518|ref|XP_005855792.1| (cobalamin synthesis protein p47k [Nannochloropsis gaditana CCMP526] >gi|422293268|gb|EKU20568.1| cobalamin synthesis protein p47k [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 406.757 bits (1044), Expect = 5.947e-136
Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 198
            MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDV REGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEP+WGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD
Sbjct:  548 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVGREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAELRAHWEPVWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREGTDGRDDESELGSEGEDELGDD 745          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|654563086|ref|WP_028030418.1| (GTP-binding protein [Gemmobacter nectariphilus])

HSP 1 Score: 121.709 bits (304), Expect = 2.323e-29
Identity = 74/178 (41.57%), Postives = 97/178 (54.49%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTAAE-LRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREG 177
            +PET+E+G++SF YR RRPF PARLH +L                           GPL  +IR KG+ WLAT    +  +SLAG++ S T      W AAI    WP+     + +RA WE  WGDRRQE+VFIG  M++A +  +LDACL+     +R TP  WA +  DPF R G
Sbjct:  252 VPETEEYGISSFVYRARRPFDPARLHGVL--------------------------NGPLPGVIRAKGHFWLATRPNWVAEFSLAGAISSVT--PLGGWWAAIPQDRWPQDPAMLDKMRAQWENPWGDRRQELVFIGAGMDRAAITASLDACLV---PASRFTPEAWAHL-ADPFPRWG 397          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|749813227|ref|WP_040292060.1| (GTP-binding protein [Acetobacteraceae bacterium AT-5844])

HSP 1 Score: 119.398 bits (298), Expect = 1.664e-28
Identity = 71/174 (40.80%), Postives = 96/174 (55.17%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWP-ETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173
            +PE++E+G+TSF +R RRP HPAR HA + GE                          L  ++R KG+ WLA+ M     W LAGS+    A     W AA DP  WP +    AE+R +W+  +GDRRQE+VFIG+ M++A +   LDACLLT+EE+ R     WA +  DPF
Sbjct:  252 LPESEEYGITSFVWRARRPLHPARFHAFINGE--------------------------LSGVVRAKGFFWLASRMPWAGSWQLAGSIGRSEAAGH--WWAATDPSRWPADPQWRAEVRRNWQEPFGDRRQEVVFIGIGMDEAALRRELDACLLTDEEL-RKGQRAWARL-PDPF 395          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|363713012|gb|EHL96671.1| (CobW/P47K family protein [Acetobacteraceae bacterium AT-5844])

HSP 1 Score: 119.013 bits (297), Expect = 2.012e-28
Identity = 71/174 (40.80%), Postives = 96/174 (55.17%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWP-ETLTAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173
            +PE++E+G+TSF +R RRP HPAR HA + GE                          L  ++R KG+ WLA+ M     W LAGS+    A     W AA DP  WP +    AE+R +W+  +GDRRQE+VFIG+ M++A +   LDACLLT+EE+ R     WA +  DPF
Sbjct:  256 LPESEEYGITSFVWRARRPLHPARFHAFINGE--------------------------LSGVVRAKGFFWLASRMPWAGSWQLAGSIGRSEAAGH--WWAATDPSRWPADPQWRAEVRRNWQEPFGDRRQEVVFIGIGMDEAALRRELDACLLTDEEL-RKGQRAWARL-PDPF 399          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1105009970|ref|WP_071798950.1| (GTP-binding protein [Natronohydrobacter thiooxidans])

HSP 1 Score: 117.087 bits (292), Expect = 1.023e-27
Identity = 74/178 (41.57%), Postives = 97/178 (54.49%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLTA-AELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPFVREG 177
            +PET+E+GV+SF YR RRPFHPA++H LL                           GPL  +IR KG+ WLAT    +  +SLAG++ S        W AAI    WP+   A A++R +W   WGDRRQE+VFIG  M++  +  ALDACL+T +     TP  WA +  DPF R G
Sbjct:  253 VPETEEYGVSSFVYRARRPFHPAKVHDLL--------------------------NGPLPGVIRAKGHFWLATRPNWVAEFSLAGAISSVA--PLGGWWAAIPQERWPDHPEAQAKMRENWVEPWGDRRQELVFIGAGMDRDALTAALDACLITADS---FTPEAWAGL-ADPFPRWG 398          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1184649743|ref|WP_085210192.1| (4-hydroxytetrahydrobiopterin dehydratase [Methylocaldum sp. 175])

HSP 1 Score: 117.087 bits (292), Expect = 1.127e-27
Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSV--HSFTANEEEKWLAAIDPVEWPETL-TAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMT 158
            +PET E+G+ SF YR RRPFHP R HA L          EGG + GT              L+R KG+ WLA+   H   WS AG V  H+       +W A++ P +WP+   T A +RA W   +GDRRQE+VFIG ++++A++   LDACLLT+ E+ 
Sbjct:  254 VPETQEYGIASFAYRARRPFHPRRFHAFL---------HEGGWDNGT--------------LLRSKGFFWLASRPDHAGGWSQAGGVMRHALAG----RWWASVPPEDWPDDPETLAAIRAEWAEPYGDRRQELVFIGQNLDEARLRAELDACLLTDAELA 387          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1182709603|emb|SMF93530.1| (GTPase, G3E family [Methylocaldum sp. 175])

HSP 1 Score: 117.087 bits (292), Expect = 1.234e-27
Identity = 67/161 (41.61%), Postives = 91/161 (56.52%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSV--HSFTANEEEKWLAAIDPVEWPETL-TAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMT 158
            +PET E+G+ SF YR RRPFHP R HA L          EGG + GT              L+R KG+ WLA+   H   WS AG V  H+       +W A++ P +WP+   T A +RA W   +GDRRQE+VFIG ++++A++   LDACLLT+ E+ 
Sbjct:  257 VPETQEYGIASFAYRARRPFHPRRFHAFL---------HEGGWDNGT--------------LLRSKGFFWLASRPDHAGGWSQAGGVMRHALAG----RWWASVPPEDWPDDPETLAAIRAEWAEPYGDRRQELVFIGQNLDEARLRAELDACLLTDAELA 390          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1099402123|emb|SFH85339.1| (GTPase, G3E family [Albimonas pacifica])

HSP 1 Score: 115.931 bits (289), Expect = 3.040e-27
Identity = 71/174 (40.80%), Postives = 91/174 (52.30%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETL-TAAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173
            +PET+E+GVTSF YR RRPFHP R+HA L                           GPL   IR KG+ W+AT  Q +  +SLAG++ S        W A++    WPE   + A     W+  WGDRRQE+VFIGV +++A++   LDA LLTE E    TP  W     DPF
Sbjct:  253 VPETEEYGVTSFVYRARRPFHPERIHAAL--------------------------NGPLPGAIRAKGHFWIATRPQWVAEFSLAGAISS--VRPLGGWWASVPRDRWPEHPESVARTLERWQDPWGDRRQELVFIGVGLDRARITGTLDAALLTEAEAPAFTPEAW-RALPDPF 397          
BLAST of EWM20566.1 vs. NCBI_GenBank
Match: gi|1005221203|gb|KYF88143.1| (hypothetical protein BE17_35430 [Sorangium cellulosum])

HSP 1 Score: 115.546 bits (288), Expect = 5.850e-27
Identity = 72/174 (41.38%), Postives = 90/174 (51.72%), Query Frame = 0
Query:    1 MPETDEFGVTSFCYRRRRPFHPARLHALLFGEGGEDVEREGGREGGTEGGQAGPAEGPLGSLIRVKGYLWLATHMQHMVFWSLAGSVHSFTANEEEKWLAAIDPVEWPETLT-AAELRAHWEPMWGDRRQEIVFIGVHMEQAKVEEALDACLLTEEEMTRMTPGDWAEVFVDPF 173
            +PET+E+G+ SF YR  RP HP RL   + G    D                         ++R KG+ WLAT M     WS AG   SF A    +W AA+   +WPE     A L A W+P WGDRRQEIVFIGV M + ++   LDACLLT EEM  + P  W+ +  DPF
Sbjct:  250 VPETEEYGIESFVYRAARPMHPERLWDFIHGATAWD------------------------GVLRSKGFFWLATRMDITGAWSQAGGAASFEA--AGRWYAALPEEQWPEDAEERAALDAAWDPAWGDRRQEIVFIGVEMARDELTRGLDACLLTREEMA-LGPSGWSRLN-DPF 395          
The following BLAST results are available for this feature:
BLAST of EWM20566.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100280|gb|EWM20566.1|2.111e-140100.00Cobalamin biosynthesis CobW [Nannochloropsis gadit... [more]
gi|553193518|ref|XP_005855792.1|5.947e-13698.99cobalamin synthesis protein p47k [Nannochloropsis ... [more]
gi|654563086|ref|WP_028030418.1|2.323e-2941.57GTP-binding protein [Gemmobacter nectariphilus][more]
gi|749813227|ref|WP_040292060.1|1.664e-2840.80GTP-binding protein [Acetobacteraceae bacterium AT... [more]
gi|363713012|gb|EHL96671.1|2.012e-2840.80CobW/P47K family protein [Acetobacteraceae bacteri... [more]
gi|1105009970|ref|WP_071798950.1|1.023e-2741.57GTP-binding protein [Natronohydrobacter thiooxidan... [more]
gi|1184649743|ref|WP_085210192.1|1.127e-2741.614-hydroxytetrahydrobiopterin dehydratase [Methyloc... [more]
gi|1182709603|emb|SMF93530.1|1.234e-2741.61GTPase, G3E family [Methylocaldum sp. 175][more]
gi|1099402123|emb|SFH85339.1|3.040e-2740.80GTPase, G3E family [Albimonas pacifica][more]
gi|1005221203|gb|KYF88143.1|5.850e-2741.38hypothetical protein BE17_35430 [Sorangium cellulo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10138rna10138Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications