EWM20590.1, cds10083 (CDS) Nannochloropsis gaditana

Overview
NameEWM20590.1
Unique Namecds10083
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037262.1:78572..78673 -
Alignment locationKK037262.1:77961..78266 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20590.1
Productribosomal protein l30
Orig transcript idgnl|cribi|Naga_101276g1.5794.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:78572..78673 -
KK037262.1supercontigKK037262.1:77961..78266 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR022991Ribosomal_L30e_CS
IPR000231Ribosomal_L30e
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
Homology
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|585100330|gb|EWM20590.1| (ribosomal protein l30 [Nannochloropsis gaditana])

HSP 1 Score: 273.092 bits (697), Expect = 8.047e-93
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query:    1 MEALTYFFSFFPGLISLPSQVGAVIGMAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
            MEALTYFFSFFPGLISLPSQVGAVIGMAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE
Sbjct:    1 MEALTYFFSFFPGLISLPSQVGAVIGMAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|299116702|emb|CBN74847.1| (ribosomal protein rpl30 [Ectocarpus siliculosus])

HSP 1 Score: 164.851 bits (416), Expect = 2.315e-50
Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = 0
Query:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDIL 132
            MAP  KKSKKAIES+N+RLQLVMKSGKASLGYK T+K++R+ +A +V+IS+NCPPLRKSEIEY+AML+K     Y GSNTDLGTACGKY+RVSVLS+T+ GDSDIL
Sbjct:    1 MAP-GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 105          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183321941|gb|ORX51741.1| (60S ribosomal protein L30-like protein [Piromyces finnis] >gi|1183360764|gb|ORX88113.1| 60S ribosomal protein L30-like protein [Anaeromyces robustus] >gi|1198306048|gb|OUM62818.1| hypothetical protein PIROE2DRAFT_10797 [Piromyces sp. E2] >gi|1205839570|gb|OWF37033.1| 60S ribosomal protein L30 [Mizuhopecten yessoensis])

HSP 1 Score: 163.696 bits (413), Expect = 7.839e-50
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0
Query:   32 KKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
            KKSKK+IESINSRL LVMKSGK SLGYK+TLKTLR  K+ +VIIS NCPPLRKSE+EYYAMLSKT    YNG+N DLGTACGKY+RV VLS+T+ GDSDI+ S+
Sbjct:    5 KKSKKSIESINSRLALVMKSGKYSLGYKQTLKTLRQGKSKLVIISGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKYFRVGVLSITDAGDSDIIKSQ 108          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|166952317|gb|ABZ04241.1| (ribosomal protein rpl30 [Lineus viridis])

HSP 1 Score: 163.31 bits (412), Expect = 1.401e-49
Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 0
Query:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPS 134
            MAPT KK+KKAIE+INSRL LVMKSGK  LGYK+TLKTLR  KA +VII++N PPLRKSEIEYYAML+KT    YNG+N DLGTACGKY+RV+VLS+T+PGDSDI+ S
Sbjct:    1 MAPT-KKTKKAIENINSRLALVMKSGKCVLGYKQTLKTLRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIDLGTACGKYFRVTVLSITDPGDSDIIRS 107          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183352067|gb|ORX80091.1| (60S ribosomal protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 162.54 bits (410), Expect = 2.312e-49
Identity = 78/109 (71.56%), Postives = 94/109 (86.24%), Query Frame = 0
Query:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
            MAP  KKSKK++ESINSRL LVMKSGK++LGYK TLK++RN KA ++I+S NCPPLRKSEIEYYAMLSKT    YNG+N +LGTACGKY+RV VLS+T+ GDSDIL ++
Sbjct:    1 MAPI-KKSKKSVESINSRLALVMKSGKSTLGYKSTLKSIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQ 108          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183357068|gb|ORX84637.1| (60S ribosomal protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 162.155 bits (409), Expect = 3.141e-49
Identity = 78/109 (71.56%), Postives = 93/109 (85.32%), Query Frame = 0
Query:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
            MAP  KKSKK++ESINSRL LVMKSGK++LGYK TLK +RN KA ++I+S NCPPLRKSEIEYYAMLSKT    YNG+N +LGTACGKY+RV VLS+T+ GDSDIL ++
Sbjct:    1 MAPI-KKSKKSVESINSRLALVMKSGKSTLGYKSTLKAIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQ 108          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|960528805|gb|ALR87692.1| (ribosomal protein p L30 [Cerebratulus lacteus])

HSP 1 Score: 162.155 bits (409), Expect = 3.151e-49
Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 0
Query:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPS 134
            MAPT KKSKKAIE+INSRL LVMKSGK  LGYK+TLK LR  KA +VII++N PPLRKSEIEYYAML+KT    YNG+N DLGTACGKY+RV+VLS+T+PGDSDI+ S
Sbjct:    1 MAPT-KKSKKAIENINSRLALVMKSGKCVLGYKQTLKALRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIDLGTACGKYFRVTVLSITDPGDSDIIRS 107          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183432055|gb|ORY56291.1| (60S ribosomal protein [Neocallimastix californiae] >gi|1183454215|gb|ORY78286.1| 60S ribosomal protein [Neocallimastix californiae])

HSP 1 Score: 161.77 bits (408), Expect = 3.635e-49
Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 0
Query:   32 KKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
            KKSKK++ESINSRL LVMKSGK +LGYK+TLKTLR  K+ +VIIS NCPPLRKSE+EYYAMLSKT    YNG+N DLGTACGKY+RV VLS+T+ GDSDI+ S+
Sbjct:    5 KKSKKSVESINSRLALVMKSGKYTLGYKQTLKTLRQGKSKLVIISGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKYFRVGVLSITDAGDSDIIKSQ 108          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183362816|gb|ORX89731.1| (60S ribosomal protein, partial [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 161.77 bits (408), Expect = 5.087e-49
Identity = 78/109 (71.56%), Postives = 93/109 (85.32%), Query Frame = 0
Query:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
            MAP  KKSKK++ESINSRL LVMKSGK++LGYK TLK +RN KA ++I+S NCPPLRKSEIEYYAMLSKT    YNG+N +LGTACGKY+RV VLS+T+ GDSDIL ++
Sbjct:    1 MAPI-KKSKKSVESINSRLALVMKSGKSTLGYKSTLKAIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTGVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQ 108          
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183333206|gb|ORX62902.1| (60S ribosomal protein [Hesseltinella vesiculosa])

HSP 1 Score: 161.384 bits (407), Expect = 6.218e-49
Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 0
Query:   27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
            MAP AKK+KK  ESINSRLQLV KSGK +LGYK TLK+LR  KA +VII+ NCPPLRKSEIEYYAMLSKT    YNG+N DLGTACGK +R SVLS+T+ GDSDIL ++
Sbjct:    1 MAPIAKKTKKNAESINSRLQLVTKSGKYTLGYKTTLKSLRQGKAKLVIIAGNCPPLRKSEIEYYAMLSKTGVHHYNGNNIDLGTACGKLFRTSVLSITDAGDSDILTAQ 109          
The following BLAST results are available for this feature:
BLAST of EWM20590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100330|gb|EWM20590.1|8.047e-93100.00ribosomal protein l30 [Nannochloropsis gaditana][more]
gi|299116702|emb|CBN74847.1|2.315e-5074.53ribosomal protein rpl30 [Ectocarpus siliculosus][more]
gi|1183321941|gb|ORX51741.1|7.839e-5075.9660S ribosomal protein L30-like protein [Piromyces ... [more]
gi|166952317|gb|ABZ04241.1|1.401e-4975.00ribosomal protein rpl30 [Lineus viridis][more]
gi|1183352067|gb|ORX80091.1|2.312e-4971.5660S ribosomal protein [Basidiobolus meristosporus ... [more]
gi|1183357068|gb|ORX84637.1|3.141e-4971.5660S ribosomal protein [Basidiobolus meristosporus ... [more]
gi|960528805|gb|ALR87692.1|3.151e-4975.00ribosomal protein p L30 [Cerebratulus lacteus][more]
gi|1183432055|gb|ORY56291.1|3.635e-4974.0460S ribosomal protein [Neocallimastix californiae]... [more]
gi|1183362816|gb|ORX89731.1|5.087e-4971.5660S ribosomal protein, partial [Basidiobolus meris... [more]
gi|1183333206|gb|ORX62902.1|6.218e-4972.4860S ribosomal protein [Hesseltinella vesiculosa][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10114rna10114Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications