EWM20590.1, cds10083 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|585100330|gb|EWM20590.1| (ribosomal protein l30 [Nannochloropsis gaditana]) HSP 1 Score: 273.092 bits (697), Expect = 8.047e-93 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
Query: 1 MEALTYFFSFFPGLISLPSQVGAVIGMAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
MEALTYFFSFFPGLISLPSQVGAVIGMAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE
Sbjct: 1 MEALTYFFSFFPGLISLPSQVGAVIGMAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|299116702|emb|CBN74847.1| (ribosomal protein rpl30 [Ectocarpus siliculosus]) HSP 1 Score: 164.851 bits (416), Expect = 2.315e-50 Identity = 79/106 (74.53%), Postives = 94/106 (88.68%), Query Frame = 0
Query: 27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDIL 132
MAP KKSKKAIES+N+RLQLVMKSGKASLGYK T+K++R+ +A +V+IS+NCPPLRKSEIEY+AML+K Y GSNTDLGTACGKY+RVSVLS+T+ GDSDIL
Sbjct: 1 MAP-GKKSKKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDIL 105
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183321941|gb|ORX51741.1| (60S ribosomal protein L30-like protein [Piromyces finnis] >gi|1183360764|gb|ORX88113.1| 60S ribosomal protein L30-like protein [Anaeromyces robustus] >gi|1198306048|gb|OUM62818.1| hypothetical protein PIROE2DRAFT_10797 [Piromyces sp. E2] >gi|1205839570|gb|OWF37033.1| 60S ribosomal protein L30 [Mizuhopecten yessoensis]) HSP 1 Score: 163.696 bits (413), Expect = 7.839e-50 Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 0
Query: 32 KKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
KKSKK+IESINSRL LVMKSGK SLGYK+TLKTLR K+ +VIIS NCPPLRKSE+EYYAMLSKT YNG+N DLGTACGKY+RV VLS+T+ GDSDI+ S+
Sbjct: 5 KKSKKSIESINSRLALVMKSGKYSLGYKQTLKTLRQGKSKLVIISGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKYFRVGVLSITDAGDSDIIKSQ 108
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|166952317|gb|ABZ04241.1| (ribosomal protein rpl30 [Lineus viridis]) HSP 1 Score: 163.31 bits (412), Expect = 1.401e-49 Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 0
Query: 27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPS 134
MAPT KK+KKAIE+INSRL LVMKSGK LGYK+TLKTLR KA +VII++N PPLRKSEIEYYAML+KT YNG+N DLGTACGKY+RV+VLS+T+PGDSDI+ S
Sbjct: 1 MAPT-KKTKKAIENINSRLALVMKSGKCVLGYKQTLKTLRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIDLGTACGKYFRVTVLSITDPGDSDIIRS 107
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183352067|gb|ORX80091.1| (60S ribosomal protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 162.54 bits (410), Expect = 2.312e-49 Identity = 78/109 (71.56%), Postives = 94/109 (86.24%), Query Frame = 0
Query: 27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
MAP KKSKK++ESINSRL LVMKSGK++LGYK TLK++RN KA ++I+S NCPPLRKSEIEYYAMLSKT YNG+N +LGTACGKY+RV VLS+T+ GDSDIL ++
Sbjct: 1 MAPI-KKSKKSVESINSRLALVMKSGKSTLGYKSTLKSIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQ 108
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183357068|gb|ORX84637.1| (60S ribosomal protein [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 162.155 bits (409), Expect = 3.141e-49 Identity = 78/109 (71.56%), Postives = 93/109 (85.32%), Query Frame = 0
Query: 27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
MAP KKSKK++ESINSRL LVMKSGK++LGYK TLK +RN KA ++I+S NCPPLRKSEIEYYAMLSKT YNG+N +LGTACGKY+RV VLS+T+ GDSDIL ++
Sbjct: 1 MAPI-KKSKKSVESINSRLALVMKSGKSTLGYKSTLKAIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTSVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQ 108
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|960528805|gb|ALR87692.1| (ribosomal protein p L30 [Cerebratulus lacteus]) HSP 1 Score: 162.155 bits (409), Expect = 3.151e-49 Identity = 81/108 (75.00%), Postives = 93/108 (86.11%), Query Frame = 0
Query: 27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPS 134
MAPT KKSKKAIE+INSRL LVMKSGK LGYK+TLK LR KA +VII++N PPLRKSEIEYYAML+KT YNG+N DLGTACGKY+RV+VLS+T+PGDSDI+ S
Sbjct: 1 MAPT-KKSKKAIENINSRLALVMKSGKCVLGYKQTLKALRQGKAKLVIIANNTPPLRKSEIEYYAMLAKTGVHHYNGNNIDLGTACGKYFRVTVLSITDPGDSDIIRS 107
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183432055|gb|ORY56291.1| (60S ribosomal protein [Neocallimastix californiae] >gi|1183454215|gb|ORY78286.1| 60S ribosomal protein [Neocallimastix californiae]) HSP 1 Score: 161.77 bits (408), Expect = 3.635e-49 Identity = 77/104 (74.04%), Postives = 90/104 (86.54%), Query Frame = 0
Query: 32 KKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
KKSKK++ESINSRL LVMKSGK +LGYK+TLKTLR K+ +VIIS NCPPLRKSE+EYYAMLSKT YNG+N DLGTACGKY+RV VLS+T+ GDSDI+ S+
Sbjct: 5 KKSKKSVESINSRLALVMKSGKYTLGYKQTLKTLRQGKSKLVIISGNCPPLRKSELEYYAMLSKTGVHHYNGNNIDLGTACGKYFRVGVLSITDAGDSDIIKSQ 108
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183362816|gb|ORX89731.1| (60S ribosomal protein, partial [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 161.77 bits (408), Expect = 5.087e-49 Identity = 78/109 (71.56%), Postives = 93/109 (85.32%), Query Frame = 0
Query: 27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
MAP KKSKK++ESINSRL LVMKSGK++LGYK TLK +RN KA ++I+S NCPPLRKSEIEYYAMLSKT YNG+N +LGTACGKY+RV VLS+T+ GDSDIL ++
Sbjct: 1 MAPI-KKSKKSVESINSRLALVMKSGKSTLGYKSTLKAIRNGKAKLIILSGNCPPLRKSEIEYYAMLSKTGVHHYNGNNIELGTACGKYFRVGVLSITDAGDSDILKTQ 108
BLAST of EWM20590.1 vs. NCBI_GenBank
Match: gi|1183333206|gb|ORX62902.1| (60S ribosomal protein [Hesseltinella vesiculosa]) HSP 1 Score: 161.384 bits (407), Expect = 6.218e-49 Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 0
Query: 27 MAPTAKKSKKAIESINSRLQLVMKSGKASLGYKETLKTLRNNKAVVVIISSNCPPLRKSEIEYYAMLSKTETILYNGSNTDLGTACGKYYRVSVLSVTNPGDSDILPSE 135
MAP AKK+KK ESINSRLQLV KSGK +LGYK TLK+LR KA +VII+ NCPPLRKSEIEYYAMLSKT YNG+N DLGTACGK +R SVLS+T+ GDSDIL ++
Sbjct: 1 MAPIAKKTKKNAESINSRLQLVTKSGKYTLGYKTTLKSLRQGKAKLVIIAGNCPPLRKSEIEYYAMLSKTGVHHYNGNNIDLGTACGKLFRTSVLSITDAGDSDILTAQ 109 The following BLAST results are available for this feature:
BLAST of EWM20590.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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