EWM29659.1, cds1008 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|585112233|gb|EWM29659.1| (hypothetical protein Naga_100112g10 [Nannochloropsis gaditana]) HSP 1 Score: 578.17 bits (1489), Expect = 0.000e+0 Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query: 1 MASCRRREAAESRKSTFMCDLGRPSFLVALYVTATLTLCCVHGFVLPMRPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSAGGKGFGPTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPAAEEPKD 285
MASCRRREAAESRKSTFMCDLGRPSFLVALYVTATLTLCCVHGFVLPMRPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSAGGKGFGPTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPAAEEPKD
Sbjct: 1 MASCRRREAAESRKSTFMCDLGRPSFLVALYVTATLTLCCVHGFVLPMRPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSAGGKGFGPTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPAAEEPKD 285
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|397613216|gb|EJK62087.1| (hypothetical protein THAOC_17315 [Thalassiosira oceanica]) HSP 1 Score: 86.6557 bits (213), Expect = 3.980e-16 Identity = 54/151 (35.76%), Postives = 76/151 (50.33%), Query Frame = 0
Query: 106 TSTPTRAKIGTVNKRLMNVIDAELDGV--------------RDRQPEEATPLS-EEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
T+ P +A TVN+RLM+ I A +D R ++ EE S EE DLNG+NP+ +G A F+ + W T LA LDTD Y QR+ + A +G+++L +G GV +G+ L RV +GV GELD
Sbjct: 115 TAEPVKAATSTVNERLMSEIQASVDTTKYGDSKKREYFNEFRSQKTEEERQRSIEEAKDLNGVNPLVCMGGATFSWACAGALWIFTQFLAQLFATHPLDTDIYFVQRLAQVFRNAVLGLSSLASGFFGVIGVGIFLLGLRVAYGVARGELD 265
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|223994417|ref|XP_002286892.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978207|gb|EED96533.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 82.0333 bits (201), Expect = 1.241e-14 Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 0
Query: 109 PTRAKIGTVNKRLMNVIDAELD----GVRDRQPEEATPLSEEDT------------DLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVH-LDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
P +A TVN+RLM+ I A +D G + E + T DLNG+NP+ +G A FA + W T L G L H L+TD Y QR+ G+ A +G+++L +G GV IG+ L RV +GV++GELD
Sbjct: 99 PAKAATSTVNERLMSEIQASVDDQKYGTNKKNREYFREFRSQKTEEERRRSIEEAKDLNGVNPLVCIGGAAFAWACAGGLWFFTTYL-GVLFASHPLETDIYFIQRLTGVFRNAVMGLSSLASGFFGVVGIGIFLLGIRVAYGVMTGELD 247
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|298706057|emb|CBJ29167.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 79.7221 bits (195), Expect = 7.901e-14 Identity = 69/194 (35.57%), Postives = 93/194 (47.94%), Query Frame = 0
Query: 89 GARPVA---PNSAG-GKGFG--------------PTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNV-HLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD-----MNKKKIAPPADSSPVPL 258
GARP+A PN G GK G T+AK+ TVN RL+ I+ + G+ EE+ + ++ DLNG+NP + A AA +SF W+ T LA A + ++D R+ A VG+ ALGAG+ GVTA+G+ +AA V GV GELD KK AP A L
Sbjct: 49 GARPLAASVPNGVGEGKRVGFASGSEDEEEEEEEGADGETKAKLQTVNARLLAQIEEQGKGIVI-PTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPEASGSKKAAPGASEEEKEL 241
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1129172194|gb|OLP81921.1| (Solute carrier family 2, facilitated glucose transporter member 3 [Symbiodinium microadriaticum]) HSP 1 Score: 81.6481 bits (200), Expect = 1.109e-13 Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 0
Query: 117 VNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSS 254
+ +RL + I + V E+ + +++ DLNGI+P A A +S+ FW T A N +++DFYP QR+ + A VG+++L +G+ G TA+G+ L RV+ GV+SGELD PAD S
Sbjct: 1452 LRQRLASTIADQEAQVEAVPTEDQKRIVQQEVDLNGIDPTACFVGAAPVAALSYGFWTFTSRSAEWFYNHPVESDFYPVQRLGFVFQAAVVGLSSLASGIFGFTALGIFLLGVRVSIGVLSGELD--------PADKS 1581
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1210526580|dbj|GAX14538.1| (hypothetical protein FisN_6Lh316 [Fistulifera solaris]) HSP 1 Score: 68.1662 bits (165), Expect = 9.108e-10 Identity = 45/146 (30.82%), Postives = 68/146 (46.58%), Query Frame = 0
Query: 112 AKIGTVNKRLMNVID----AELDGVRDRQPEEATPLSEEDTD------------LNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
A+ GTVN+RLM + E G R + + + TD LNG+NPV + A +F W +T A + +++DFY +R+ + +GI +L G GVT +G+ L RV +GV +GELD
Sbjct: 67 AQTGTVNERLMQELQEAKQKEKFGARSKFSKNFDGFRSQKTDEEREAAIAAARNLNGVNPVVTTIGGVLALAAAFGLWTLTTTAAEFFASHPVNSDFYVVERLAAVFRNVVMGIISLATGFFGVTGLGIFLLGVRVAYGVATGELD 212
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1210519071|dbj|GAX22069.1| (hypothetical protein FisN_6Hh316 [Fistulifera solaris]) HSP 1 Score: 67.3958 bits (163), Expect = 1.302e-9 Identity = 46/151 (30.46%), Postives = 69/151 (45.70%), Query Frame = 0
Query: 107 STPTRAKIGTVNKRLMNVID----AELDGVRDRQPEEATPLSEEDTD------------LNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
+T A+ GTVN+RLM + E G R + + + TD LNG+NPV + A +F W +T A + + +DFY +R+ + +GI +L G GVT +G+ L RV +GV +GELD
Sbjct: 41 ATQLAAQTGTVNERLMQELQEAKQKEKFGARSKFSKNFDGFRSQKTDEEREAAIAAARNLNGVNPVVTTIGGVLALAAAFGLWTLTTTAAEFFASHPVVSDFYVVERLAAVFRNVVMGIISLATGFFGVTGLGIFLLGVRVAYGVATGELD 191
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|219110249|ref|XP_002176876.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411411|gb|EEC51339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 66.6254 bits (161), Expect = 3.307e-9 Identity = 45/153 (29.41%), Postives = 74/153 (48.37%), Query Frame = 0
Query: 107 STPTRAKIGTVNKRLMNVIDAELD----GVRDRQPEEA--TPLSEEDTD------------LNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
++ +A GTVN+RLM ++AE D G R + ++ + TD LNG+NP+ L ++ A I+ W T L + ++FY +R + +G+ +L +G GV+ +G+ L RV +GVV+GELD
Sbjct: 79 ASQEKALTGTVNERLMQELEAEKDKEKFGARSKLGKKLGLAAFRSQKTDAEREAAIAEARNLNGVNPLVTLAGSLVALGIAAGLWAATNSLGAFFTLNPVVSEFYFVERSAAVFRNVAMGLISLASGFFGVSGLGIFLLGMRVAYGVVTGELD 231
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|922880211|gb|KOO45992.1| (hypothetical protein Ctob_013599 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 64.3142 bits (155), Expect = 1.631e-8 Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 0
Query: 148 TDLNGINP-VQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTD-FYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAP 249
TDLNGI+P + LGA+ + A +S L + T G NN + D FY R +A + + ALG+ V + A G L L +V+ G+ GELD N K+I P
Sbjct: 102 TDLNGISPWLLILGASSYGA-VSVLAYHFTMGATDMFNNQPISDDTFYVVARFSTVARYVVIAMGALGSTVCAIAAAGQLALCVQVSIGIARGELDPNAKRIDP 204
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1072222017|gb|OEU06789.1| (hypothetical protein FRACYDRAFT_265503 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 63.1586 bits (152), Expect = 4.767e-8 Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 0
Query: 129 LDGV-RDRQPEEATPLS-EEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
+DG R R+ +E ++ EE DLNG+NP+ +G + FA ++ W T L + TD Y R + +G+ +L AG GV +G+ G+ RV +G+ +GELD
Sbjct: 106 VDGYGRSRKSDEEVKMAIEEARDLNGVNPIVAIGGSFFAFAVAAALWYATNQLGSYFVSHPPATDVYFVIRSAQVFRNVVMGLISLAAGFFGVCGLGIFGMGVRVAYGIANGELD 220 The following BLAST results are available for this feature:
BLAST of EWM29659.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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