EWM29659.1, cds1008 (CDS) Nannochloropsis gaditana

Overview
NameEWM29659.1
Unique Namecds1008
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:950340..951197 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29659.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100112g10.5442.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:950340..951197 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|585112233|gb|EWM29659.1| (hypothetical protein Naga_100112g10 [Nannochloropsis gaditana])

HSP 1 Score: 578.17 bits (1489), Expect = 0.000e+0
Identity = 285/285 (100.00%), Postives = 285/285 (100.00%), Query Frame = 0
Query:    1 MASCRRREAAESRKSTFMCDLGRPSFLVALYVTATLTLCCVHGFVLPMRPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSAGGKGFGPTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPAAEEPKD 285
            MASCRRREAAESRKSTFMCDLGRPSFLVALYVTATLTLCCVHGFVLPMRPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSAGGKGFGPTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPAAEEPKD
Sbjct:    1 MASCRRREAAESRKSTFMCDLGRPSFLVALYVTATLTLCCVHGFVLPMRPSQGGDVRFQRPSWRQRDVSVLSTTQEPGSEAPGDSMPLGARPVAPNSAGGKGFGPTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSSPVPLDAQGLPKVTGAWYDVSPPAPAAEEPKD 285          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|397613216|gb|EJK62087.1| (hypothetical protein THAOC_17315 [Thalassiosira oceanica])

HSP 1 Score: 86.6557 bits (213), Expect = 3.980e-16
Identity = 54/151 (35.76%), Postives = 76/151 (50.33%), Query Frame = 0
Query:  106 TSTPTRAKIGTVNKRLMNVIDAELDGV--------------RDRQPEEATPLS-EEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
            T+ P +A   TVN+RLM+ I A +D                R ++ EE    S EE  DLNG+NP+  +G A F+   +   W  T  LA       LDTD Y  QR+  +   A +G+++L +G  GV  +G+  L  RV +GV  GELD
Sbjct:  115 TAEPVKAATSTVNERLMSEIQASVDTTKYGDSKKREYFNEFRSQKTEEERQRSIEEAKDLNGVNPLVCMGGATFSWACAGALWIFTQFLAQLFATHPLDTDIYFVQRLAQVFRNAVLGLSSLASGFFGVIGVGIFLLGLRVAYGVARGELD 265          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|223994417|ref|XP_002286892.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978207|gb|EED96533.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.0333 bits (201), Expect = 1.241e-14
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 0
Query:  109 PTRAKIGTVNKRLMNVIDAELD----GVRDRQPEEATPLSEEDT------------DLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVH-LDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
            P +A   TVN+RLM+ I A +D    G   +  E       + T            DLNG+NP+  +G A FA   +   W  T  L G L   H L+TD Y  QR+ G+   A +G+++L +G  GV  IG+  L  RV +GV++GELD
Sbjct:   99 PAKAATSTVNERLMSEIQASVDDQKYGTNKKNREYFREFRSQKTEEERRRSIEEAKDLNGVNPLVCIGGAAFAWACAGGLWFFTTYL-GVLFASHPLETDIYFIQRLTGVFRNAVMGLSSLASGFFGVVGIGIFLLGIRVAYGVMTGELD 247          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|298706057|emb|CBJ29167.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.7221 bits (195), Expect = 7.901e-14
Identity = 69/194 (35.57%), Postives = 93/194 (47.94%), Query Frame = 0
Query:   89 GARPVA---PNSAG-GKGFG--------------PTSTPTRAKIGTVNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNV-HLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD-----MNKKKIAPPADSSPVPL 258
            GARP+A   PN  G GK  G                   T+AK+ TVN RL+  I+ +  G+     EE+  +  ++ DLNG+NP   +  A  AA +SF  W+ T  LA A  +    ++D     R+      A VG+ ALGAG+ GVTA+G+  +AA V  GV  GELD        KK AP A      L
Sbjct:   49 GARPLAASVPNGVGEGKRVGFASGSEDEEEEEEEGADGETKAKLQTVNARLLAQIEEQGKGIVI-PTEESKKIKRKEEDLNGVNPFYAILGAGGAAAMSFGSWKATLWLAQAYYSKPAEESDILAVARMTSFIKQAVVGLFALGAGIFGVTALGMGVMAAIVAVGVAKGELDPSPEASGSKKAAPGASEEEKEL 241          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1129172194|gb|OLP81921.1| (Solute carrier family 2, facilitated glucose transporter member 3 [Symbiodinium microadriaticum])

HSP 1 Score: 81.6481 bits (200), Expect = 1.109e-13
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 0
Query:  117 VNKRLMNVIDAELDGVRDRQPEEATPLSEEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAPPADSS 254
            + +RL + I  +   V     E+   + +++ DLNGI+P      A   A +S+ FW  T   A    N  +++DFYP QR+  +   A VG+++L +G+ G TA+G+  L  RV+ GV+SGELD        PAD S
Sbjct: 1452 LRQRLASTIADQEAQVEAVPTEDQKRIVQQEVDLNGIDPTACFVGAAPVAALSYGFWTFTSRSAEWFYNHPVESDFYPVQRLGFVFQAAVVGLSSLASGIFGFTALGIFLLGVRVSIGVLSGELD--------PADKS 1581          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1210526580|dbj|GAX14538.1| (hypothetical protein FisN_6Lh316 [Fistulifera solaris])

HSP 1 Score: 68.1662 bits (165), Expect = 9.108e-10
Identity = 45/146 (30.82%), Postives = 68/146 (46.58%), Query Frame = 0
Query:  112 AKIGTVNKRLMNVID----AELDGVRDRQPEEATPLSEEDTD------------LNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
            A+ GTVN+RLM  +      E  G R +  +       + TD            LNG+NPV      + A   +F  W +T   A    +  +++DFY  +R+  +     +GI +L  G  GVT +G+  L  RV +GV +GELD
Sbjct:   67 AQTGTVNERLMQELQEAKQKEKFGARSKFSKNFDGFRSQKTDEEREAAIAAARNLNGVNPVVTTIGGVLALAAAFGLWTLTTTAAEFFASHPVNSDFYVVERLAAVFRNVVMGIISLATGFFGVTGLGIFLLGVRVAYGVATGELD 212          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1210519071|dbj|GAX22069.1| (hypothetical protein FisN_6Hh316 [Fistulifera solaris])

HSP 1 Score: 67.3958 bits (163), Expect = 1.302e-9
Identity = 46/151 (30.46%), Postives = 69/151 (45.70%), Query Frame = 0
Query:  107 STPTRAKIGTVNKRLMNVID----AELDGVRDRQPEEATPLSEEDTD------------LNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
            +T   A+ GTVN+RLM  +      E  G R +  +       + TD            LNG+NPV      + A   +F  W +T   A    +  + +DFY  +R+  +     +GI +L  G  GVT +G+  L  RV +GV +GELD
Sbjct:   41 ATQLAAQTGTVNERLMQELQEAKQKEKFGARSKFSKNFDGFRSQKTDEEREAAIAAARNLNGVNPVVTTIGGVLALAAAFGLWTLTTTAAEFFASHPVVSDFYVVERLAAVFRNVVMGIISLATGFFGVTGLGIFLLGVRVAYGVATGELD 191          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|219110249|ref|XP_002176876.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411411|gb|EEC51339.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 66.6254 bits (161), Expect = 3.307e-9
Identity = 45/153 (29.41%), Postives = 74/153 (48.37%), Query Frame = 0
Query:  107 STPTRAKIGTVNKRLMNVIDAELD----GVRDRQPEEA--TPLSEEDTD------------LNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
            ++  +A  GTVN+RLM  ++AE D    G R +  ++        + TD            LNG+NP+  L  ++ A  I+   W  T  L        + ++FY  +R   +     +G+ +L +G  GV+ +G+  L  RV +GVV+GELD
Sbjct:   79 ASQEKALTGTVNERLMQELEAEKDKEKFGARSKLGKKLGLAAFRSQKTDAEREAAIAEARNLNGVNPLVTLAGSLVALGIAAGLWAATNSLGAFFTLNPVVSEFYFVERSAAVFRNVAMGLISLASGFFGVSGLGIFLLGMRVAYGVVTGELD 231          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|922880211|gb|KOO45992.1| (hypothetical protein Ctob_013599 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 64.3142 bits (155), Expect = 1.631e-8
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = 0
Query:  148 TDLNGINP-VQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTD-FYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELDMNKKKIAP 249
            TDLNGI+P +  LGA+ + A +S L +  T G     NN  +  D FY   R   +A    + + ALG+ V  + A G L L  +V+ G+  GELD N K+I P
Sbjct:  102 TDLNGISPWLLILGASSYGA-VSVLAYHFTMGATDMFNNQPISDDTFYVVARFSTVARYVVIAMGALGSTVCAIAAAGQLALCVQVSIGIARGELDPNAKRIDP 204          
BLAST of EWM29659.1 vs. NCBI_GenBank
Match: gi|1072222017|gb|OEU06789.1| (hypothetical protein FRACYDRAFT_265503 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.1586 bits (152), Expect = 4.767e-8
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 0
Query:  129 LDGV-RDRQPEEATPLS-EEDTDLNGINPVQPLGAAMFAAFISFLFWRITFGLAGALNNVHLDTDFYPAQRVFGIASTAFVGITALGAGVIGVTAIGLLGLAARVTFGVVSGELD 241
            +DG  R R+ +E   ++ EE  DLNG+NP+  +G + FA  ++   W  T  L     +    TD Y   R   +     +G+ +L AG  GV  +G+ G+  RV +G+ +GELD
Sbjct:  106 VDGYGRSRKSDEEVKMAIEEARDLNGVNPIVAIGGSFFAFAVAAALWYATNQLGSYFVSHPPATDVYFVIRSAQVFRNVVMGLISLAAGFFGVCGLGIFGMGVRVAYGIANGELD 220          
The following BLAST results are available for this feature:
BLAST of EWM29659.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112233|gb|EWM29659.1|0.000e+0100.00hypothetical protein Naga_100112g10 [Nannochlorops... [more]
gi|397613216|gb|EJK62087.1|3.980e-1635.76hypothetical protein THAOC_17315 [Thalassiosira oc... [more]
gi|223994417|ref|XP_002286892.1|1.241e-1436.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298706057|emb|CBJ29167.1|7.901e-1435.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|1129172194|gb|OLP81921.1|1.109e-1334.78Solute carrier family 2, facilitated glucose trans... [more]
gi|1210526580|dbj|GAX14538.1|9.108e-1030.82hypothetical protein FisN_6Lh316 [Fistulifera sola... [more]
gi|1210519071|dbj|GAX22069.1|1.302e-930.46hypothetical protein FisN_6Hh316 [Fistulifera sola... [more]
gi|219110249|ref|XP_002176876.1|3.307e-929.41predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|922880211|gb|KOO45992.1|1.631e-838.46hypothetical protein Ctob_013599 [Chrysochromulina... [more]
gi|1072222017|gb|OEU06789.1|4.767e-833.04hypothetical protein FRACYDRAFT_265503 [Fragilario... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1009rna1009Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications