EWM20632.1, cds10042 (CDS) Nannochloropsis gaditana

Overview
NameEWM20632.1
Unique Namecds10042
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:74644..74744 -
Alignment locationKK037261.1:74298..74434 -
Alignment locationKK037261.1:74086..74178 -
Alignment locationKK037261.1:73764..73912 -
Alignment locationKK037261.1:73320..73432 -
Alignment locationKK037261.1:73080..73191 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20632.1
Productproteasome subunit alpha type 3
Orig transcript idgnl|cribi|Naga_100873g2.2863.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:74644..74744 -
KK037261.1supercontigKK037261.1:74298..74434 -
KK037261.1supercontigKK037261.1:74086..74178 -
KK037261.1supercontigKK037261.1:73764..73912 -
KK037261.1supercontigKK037261.1:73320..73432 -
KK037261.1supercontigKK037261.1:73080..73191 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005839proteasome core complex
GO:0019773proteasome core complex, alpha-subunit complex
Vocabulary: INTERPRO
TermDefinition
IPR023332Proteasome_suA-type
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
IPR000426Proteasome_asu_N
Homology
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|585100418|gb|EWM20632.1| (proteasome subunit alpha type 3 [Nannochloropsis gaditana])

HSP 1 Score: 485.723 bits (1249), Expect = 9.428e-174
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234
            MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV
Sbjct:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|553194011|ref|XP_005855873.1| (20S proteasome subunit alpha 7 [Nannochloropsis gaditana CCMP526] >gi|422293182|gb|EKU20482.1| 20S proteasome subunit alpha 7 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 484.182 bits (1245), Expect = 1.219e-172
Identity = 233/234 (99.57%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234
            MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIEL+VIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV
Sbjct:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELHVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|299117379|emb|CBN75335.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 337.421 bits (864), Expect = 1.059e-114
Identity = 153/231 (66.23%), Postives = 192/231 (83.12%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPR 231
            MSSTGAGYD+S TTFSPDG++FQVEYA KAVENSGTA+G++CKDGV+LAVE L++SK+LV+ SNRR + V  H+ +AVAGL +D RQ+V R R+E   Y +NYGS MPP++LADRLAQ+VHYFTL+ SLRPFGASVL+AG+D      EL V+EPSGV Y++FGAA+GKGRQ AKTE+EKLK  + TC +A+K++ KILH LHDE+KDKPFELEM+WV   +G+K Q VP+
Sbjct:    1 MSSTGAGYDLSATTFSPDGKIFQVEYATKAVENSGTAMGVRCKDGVLLAVEKLLISKMLVAGSNRRVHGVSKHVGMAVAGLSADARQIVYRGRDEVAGYIENYGSQMPPSMLADRLAQYVHYFTLHGSLRPFGASVLVAGYDVELKKHELYVVEPSGVMYRYFGAAVGKGRQAAKTEMEKLKFDDMTCKEAMKQVCKILHVLHDEAKDKPFELEMSWVCEESGWKYQAVPQ 231          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|676394471|ref|XP_009040513.1| (hypothetical protein AURANDRAFT_55034 [Aureococcus anophagefferens] >gi|323448884|gb|EGB04777.1| hypothetical protein AURANDRAFT_55034 [Aureococcus anophagefferens])

HSP 1 Score: 316.62 bits (810), Expect = 1.822e-106
Identity = 142/234 (60.68%), Postives = 188/234 (80.34%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234
            M+STGAGYD+SPTTFSPDGR+FQVEYA KAVEN+GT +G+KCKDGV+L VE +MLSK+L+ +SNRR   V +H  +A AGL +DGRQVV RAREE +NY++ YG  +PPT+LA RL+++VHYFT++ +LRPFG S +IA +D    + +L V+EP+GV  ++FGAALGKGRQ AK+EIEKL LT  TC DA+KE+AK+++  +DESKDKPF LEMAW+     ++ Q VP+D++
Sbjct:    1 MASTGAGYDLSPTTFSPDGRIFQVEYATKAVENAGTVVGMKCKDGVVLGVEKVMLSKMLLPSSNRRVATVSAHAGVAQAGLAADGRQVVARAREECDNYEEVYGIPIPPTVLAQRLSEYVHYFTIHGALRPFGTSTMIAAYDEREKAHQLYVLEPTGVCLRYFGAALGKGRQSAKSEIEKLDLTTLTCRDALKEIAKMIYTCYDESKDKPFILEMAWLCEETKFEYQLVPQDLI 234          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|1173961130|gb|OQS07191.1| (proteasome subunit alpha type-3 [Thraustotheca clavata])

HSP 1 Score: 305.449 bits (781), Expect = 4.121e-102
Identity = 143/233 (61.37%), Postives = 184/233 (78.97%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDI 233
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAVE+SGTAIG+ C DGV++ VE ++LSK+LV  ++RR + V  H+ +A+AGLV+DGRQ+VNRAREEA  YK NYGS +PP ILADR++Q+VHYFTL  S+RPFG S+++AG D  T    LNVIEPSGV+Y+F G A+GKG Q AKTEIEK K+ + TC +A+K +AKIL+ LHDE K  PFELE++W+   + ++ Q VP +I
Sbjct:    1 MSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRIHAVDRHVGLAMAGLVADGRQLVNRAREEASGYKKNYGSAIPPQILADRMSQYVHYFTLYGSVRPFGTSIMLAGRDVDTGKCYLNVIEPSGVSYRFRGCAMGKGEQAAKTEIEKYKIFDMTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESKWQHQLVPDNI 232          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|669141560|ref|XP_008606342.1| (20S proteasome subunit alpha 7 [Saprolegnia diclina VS20] >gi|530741626|gb|EQC39868.1| 20S proteasome subunit alpha 7 [Saprolegnia diclina VS20])

HSP 1 Score: 304.294 bits (778), Expect = 1.066e-101
Identity = 141/233 (60.52%), Postives = 185/233 (79.40%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDI 233
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAVE+SGTAIG+ C DGV++ VE ++LSK+LV  ++RR + +  H+ +A+AGLV+DGRQ+VNRAREEA +YK NYGS +PP +LADR++Q+VHYFTL  S+RPFG S+++AG D  T    LNVIEPSGV+Y+F G A+GKG Q AKTEIEK K+ + TC +A+K +AKIL+ LHDE K  PFELE++W+   + ++ Q VP +I
Sbjct:    1 MSSTGAGYDLSVGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRVHAIDRHVGLAMAGLVADGRQLVNRAREEASSYKKNYGSPIPPQVLADRMSQYVHYFTLYGSVRPFGTSIMLAGRDVDTGKCYLNVIEPSGVSYRFRGCAMGKGEQAAKTEIEKYKIFDMTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESKWQHQLVPDNI 232          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|813194188|ref|XP_012208428.1| (hypothetical protein SPRG_14081 [Saprolegnia parasitica CBS 223.65] >gi|641526490|gb|KDO20850.1| hypothetical protein SPRG_14081 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 304.294 bits (778), Expect = 1.102e-101
Identity = 142/233 (60.94%), Postives = 184/233 (78.97%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDI 233
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAVE+SGTAIG+ C DGV++ VE ++LSK+LV  ++RR + +  HI +A+AGLV+DGRQ+VNRAREEA  YK NYGS +PP +LADR++Q+VHYFTL  S+RPFG S+++AG D  T    LNVIEPSGV+Y+F G A+GKG Q AKTEIEK K+ + TC +A+K +AKIL+ LHDE K  PFELE++W+   + ++ Q VP +I
Sbjct:    1 MSSTGAGYDLSVGTFSPDGRIFQVEYAKKAVESSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRVHAIDRHIGLAMAGLVADGRQLVNRAREEASGYKKNYGSPIPPQVLADRMSQYVHYFTLYGSVRPFGTSIMLAGRDVDTGKCYLNVIEPSGVSYRFRGCAMGKGEQAAKTEIEKYKIFDMTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESKWQHQLVPDNI 232          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|971511704|dbj|GAQ86485.1| (20S proteasome regulatory subunit alpha protein [Klebsormidium nitens])

HSP 1 Score: 300.827 bits (769), Expect = 2.500e-100
Identity = 136/234 (58.12%), Postives = 184/234 (78.63%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDIV 234
            MSS G GYD+S TTFSPDGR+FQ EYA KAV+NSGTA+G++CKDG++L VE L++SK+LV  SNRR  +V  HI +A AGLV+DGRQ+VNRAR EA NYK  YG  +P  ++ADR+A FVH +TL +S+RPFG+SVL+  +D   +  +L  IEP+G++++FFG A+GKGRQ AKTEIEKLKL+E TC + V  +AKI++ +HDE+KDK FELE++W+   +G + +RVP D++
Sbjct:    1 MSSIGTGYDLSSTTFSPDGRVFQTEYATKAVDNSGTAVGIRCKDGIVLGVEKLVISKMLVEGSNRRILSVDRHIGVATAGLVADGRQIVNRARAEASNYKTFYGDAIPGQVIADRVATFVHLYTLYWSVRPFGSSVLLGVYD--KEGPQLYAIEPTGISHRFFGTAIGKGRQAAKTEIEKLKLSEMTCREGVTAVAKIIYGVHDEAKDKAFELELSWICEESGREHKRVPADVL 232          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|1173936382|gb|OQR87341.1| (proteasome subunit alpha type-3 [Achlya hypogyna])

HSP 1 Score: 299.671 bits (766), Expect = 7.353e-100
Identity = 139/233 (59.66%), Postives = 183/233 (78.54%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDI 233
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAV++SGTAIG+ C DGV++ VE ++LSK+LV  ++RR + V  H+ + +AGLV+DGRQ+VNRAREEA  YK NYGS +PP +LADR++Q+VHYFTL  S+RPFG S+++AG D  T    LNVI+PSGV+Y+F G A+GKG Q AKTEIEK K+ + TC +A+K +AKIL+ LHDE K  PFELE++W+   + ++ Q VP +I
Sbjct:    1 MSSTGAGYDLSVGTFSPDGRIFQVEYAKKAVDSSGTAIGIHCTDGVVMGVEKILLSKMLVPGTHRRIHAVDRHVGLTMAGLVADGRQLVNRAREEASGYKKNYGSPIPPQVLADRMSQYVHYFTLYGSVRPFGTSIMLAGRDVDTGKCYLNVIDPSGVSYRFRGCAMGKGEQAAKTEIEKYKIFDMTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESKWQHQLVPDNI 232          
BLAST of EWM20632.1 vs. NCBI_GenBank
Match: gi|673037976|ref|XP_008872949.1| (hypothetical protein H310_08821 [Aphanomyces invadans] >gi|574471745|gb|ETV98752.1| hypothetical protein H310_08821 [Aphanomyces invadans])

HSP 1 Score: 310.071 bits (793), Expect = 1.223e-99
Identity = 144/233 (61.80%), Postives = 187/233 (80.26%), Query Frame = 0
Query:    1 MSSTGAGYDVSPTTFSPDGRLFQVEYAGKAVENSGTAIGLKCKDGVILAVENLMLSKLLVSNSNRRTYNVGSHISIAVAGLVSDGRQVVNRAREEAENYKDNYGSDMPPTILADRLAQFVHYFTLNYSLRPFGASVLIAGHDAFTDSIELNVIEPSGVAYKFFGAALGKGRQGAKTEIEKLKLTETTCDDAVKEMAKILHKLHDESKDKPFELEMAWVTAANGYKAQRVPRDI 233
            MSSTGAGYD+S  TFSPDGR+FQVEYA KAVENSGTAIG+ CKDGV++ VE ++LSKLLV  ++RR + +  H+ +A++GLV+DGRQ+VNRAREEA +YK NYGS +PP +LADR++Q+VHY+TL  S+RPFG S+++AG D  T    LNVIEPSGV+Y+F GAA+GKG Q AKTEIEK KL + TC +A+K +AKIL+ LHDE K  PFELE++W+   + ++ Q VP +I
Sbjct:  325 MSSTGAGYDLSAGTFSPDGRIFQVEYAKKAVENSGTAIGINCKDGVVMGVEKILLSKLLVPGTHRRIHAIDRHVGLAISGLVADGRQLVNRAREEAASYKKNYGSPIPPQMLADRMSQYVHYYTLYGSVRPFGTSIMLAGRDVDTGKTFLNVIEPSGVSYRFRGAAMGKGEQAAKTEIEKYKLFDLTCREAIKYIAKILNVLHDEVK-HPFELELSWLCEESNWQHQLVPANI 556          
The following BLAST results are available for this feature:
BLAST of EWM20632.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100418|gb|EWM20632.1|9.428e-174100.00proteasome subunit alpha type 3 [Nannochloropsis g... [more]
gi|553194011|ref|XP_005855873.1|1.219e-17299.5720S proteasome subunit alpha 7 [Nannochloropsis ga... [more]
gi|299117379|emb|CBN75335.1|1.059e-11466.23conserved unknown protein [Ectocarpus siliculosus][more]
gi|676394471|ref|XP_009040513.1|1.822e-10660.68hypothetical protein AURANDRAFT_55034 [Aureococcus... [more]
gi|1173961130|gb|OQS07191.1|4.121e-10261.37proteasome subunit alpha type-3 [Thraustotheca cla... [more]
gi|669141560|ref|XP_008606342.1|1.066e-10160.5220S proteasome subunit alpha 7 [Saprolegnia diclin... [more]
gi|813194188|ref|XP_012208428.1|1.102e-10160.94hypothetical protein SPRG_14081 [Saprolegnia paras... [more]
gi|971511704|dbj|GAQ86485.1|2.500e-10058.1220S proteasome regulatory subunit alpha protein [K... [more]
gi|1173936382|gb|OQR87341.1|7.353e-10059.66proteasome subunit alpha type-3 [Achlya hypogyna][more]
gi|673037976|ref|XP_008872949.1|1.223e-9961.80hypothetical protein H310_08821 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10073rna10073Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications