EWM20637.1, cds10037 (CDS) Nannochloropsis gaditana

Overview
NameEWM20637.1
Unique Namecds10037
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:58645..58729 -
Alignment locationKK037261.1:57564..58237 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20637.1
ProductRhodanese-like protein
Orig transcript idgnl|cribi|Naga_101233g1.1220.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:58645..58729 -
KK037261.1supercontigKK037261.1:57564..58237 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR001763Rhodanese-like_dom
IPR013083Znf_RING/FYVE/PHD
Homology
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|585100431|gb|EWM20637.1| (Rhodanese-like protein [Nannochloropsis gaditana])

HSP 1 Score: 496.893 bits (1278), Expect = 1.484e-177
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTGKGGREGEREGGGAREDLVPPPCPGPSCESHRDAESLYPSARIVEPSAPSALVHLDADGREGGREGGREGRRDVVGSCQVCAQSWDDYKSRTRCRHCRMLLLVCDACRDRPGRLVERGGERGGAGWLCEHCQPQREEREVLRSQRARRRRRKGSMTFLPASEGLTGSEMGEEIRSDARAATLEGGGK 252
            MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTGKGGREGEREGGGAREDLVPPPCPGPSCESHRDAESLYPSARIVEPSAPSALVHLDADGREGGREGGREGRRDVVGSCQVCAQSWDDYKSRTRCRHCRMLLLVCDACRDRPGRLVERGGERGGAGWLCEHCQPQREEREVLRSQRARRRRRKGSMTFLPASEGLTGSEMGEEIRSDARAATLEGGGK
Sbjct:    1 MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTGKGGREGEREGGGAREDLVPPPCPGPSCESHRDAESLYPSARIVEPSAPSALVHLDADGREGGREGGREGRRDVVGSCQVCAQSWDDYKSRTRCRHCRMLLLVCDACRDRPGRLVERGGERGGAGWLCEHCQPQREEREVLRSQRARRRRRKGSMTFLPASEGLTGSEMGEEIRSDARAATLEGGGK 252          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|1173954711|gb|OQS01894.1| (hypothetical protein THRCLA_05671 [Thraustotheca clavata])

HSP 1 Score: 97.4413 bits (241), Expect = 1.227e-20
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTGK 67
            MYCTGG+RCE+AS FLRS+G  DV  L+GGI RYLE FP+GGFF GKNFVFD+RV + P  A   G 
Sbjct:   59 MYCTGGIRCEKASQFLRSKGVTDVHHLKGGIHRYLEKFPDGGFFQGKNFVFDKRVLMGPQSADVVGN 125          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|813157465|ref|XP_012202081.1| (hypothetical protein SPRG_07557 [Saprolegnia parasitica CBS 223.65] >gi|641533313|gb|KDO27308.1| hypothetical protein SPRG_07557 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 99.3673 bits (246), Expect = 1.858e-20
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTG 66
            MYCTGG+RCE+AS FLRS+G +DV  L+GGI RYLE FP+GGFF GKNFVFD+RV + P  A   G
Sbjct:  212 MYCTGGIRCEKASQFLRSKGIKDVHHLKGGIHRYLEQFPDGGFFQGKNFVFDKRVLMGPTTADVVG 277          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|669144906|ref|XP_008608015.1| (hypothetical protein SDRG_04132 [Saprolegnia diclina VS20] >gi|530740181|gb|EQC38423.1| hypothetical protein SDRG_04132 [Saprolegnia diclina VS20])

HSP 1 Score: 97.8265 bits (242), Expect = 6.751e-20
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTG 66
            MYCTGG+RCE+AS FLRS+G  DV  L+GGI RYLE FP+GGFF GKNFVFD+RV + P  A   G
Sbjct:  212 MYCTGGIRCEKASQFLRSKGITDVHHLKGGIHRYLEQFPDGGFFQGKNFVFDKRVLMGPKTADVVG 277          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|1173951753|gb|OQR99560.1| (hypothetical protein ACHHYP_05755 [Achlya hypogyna])

HSP 1 Score: 96.6709 bits (239), Expect = 1.850e-19
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTG 66
            MYCTGG+RCE+AS FLR++G +DV  L+GGI RYLE +P+GGFF GKNFVFD+RV + P  A   G
Sbjct:  205 MYCTGGIRCEKASQFLRAKGIKDVHHLKGGIHRYLEKYPDGGFFQGKNFVFDKRVLMGPESADVVG 270          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|1173961803|gb|OQS07728.1| (hypothetical protein THRCLA_00275 [Thraustotheca clavata])

HSP 1 Score: 95.1301 bits (235), Expect = 3.323e-19
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQGYRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTGK 67
            MYCTGG+RCE+ASA+LR  G  +V QL GGI RYLEAFP+GG F GKNFVFD+RV++A       GK
Sbjct:  180 MYCTGGIRCEKASAYLRHLGLENVYQLNGGIHRYLEAFPDGGQFIGKNFVFDQRVTMASLNTQVVGK 246          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|545363470|ref|XP_005646856.1| (Phospholipase/Carboxylesterase family protein [Coccomyxa subellipsoidea C-169] >gi|384248829|gb|EIE22312.1| Phospholipase/Carboxylesterase family protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 96.6709 bits (239), Expect = 3.507e-19
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQG--YRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRT 65
            MYCTGGVRCERASA+LRS+G  ++DV QL GGI RY+EAFP GG+F G+NFVFDERV+VA  G+GR 
Sbjct:  203 MYCTGGVRCERASAYLRSKGPAFQDVYQLEGGIQRYMEAFPLGGYFAGRNFVFDERVTVA-GGSGRV 268          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|1027089876|ref|XP_016651139.1| (PREDICTED: rhodanese-like domain-containing protein 6 isoform X1 [Prunus mume])

HSP 1 Score: 96.2857 bits (238), Expect = 4.536e-19
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQG--YRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTG 66
            MYCTGG+RCE ASA++RS+G  Y +V QL GGI RYLE FP+GGFF GKNFVFD R+SVA + A   G
Sbjct:  220 MYCTGGIRCEMASAYIRSKGAGYENVFQLFGGIQRYLEQFPDGGFFRGKNFVFDHRISVASSDANILG 287          

HSP 2 Score: 62.3882 bits (150), Expect = 1.576e-7
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0
Query:  138 DVVGSCQVCAQSWDDYKSRTRCRHCRMLLLVCDACRDRPGRLVERGGERGGAGWLCEHCQPQREEREVLRS 208
            +++G+C +C  S+DDY SR RC +CRML+LVCD+C+           +R G+ ++CE C+      E++ S
Sbjct:  284 NILGTCLLCGVSFDDYSSRLRCSYCRMLVLVCDSCQ-----------QRKGSVYVCELCKNHHMGVELVSS 343          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|302805560|ref|XP_002984531.1| (hypothetical protein SELMODRAFT_234558 [Selaginella moellendorffii] >gi|300147919|gb|EFJ14581.1| hypothetical protein SELMODRAFT_234558 [Selaginella moellendorffii])

HSP 1 Score: 96.2857 bits (238), Expect = 4.537e-19
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQG--YRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSV 57
            MYCTGGVRCE ASA++RS+G  + +V QL GGI RYLEAFPEGG+FHGKNFVFD R+SV
Sbjct:  197 MYCTGGVRCEMASAYIRSKGEEFENVYQLSGGIQRYLEAFPEGGYFHGKNFVFDHRISV 255          
BLAST of EWM20637.1 vs. NCBI_GenBank
Match: gi|645221739|ref|XP_008246127.1| (PREDICTED: rhodanese-like domain-containing protein 6 isoform X2 [Prunus mume])

HSP 1 Score: 96.2857 bits (238), Expect = 4.664e-19
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 0
Query:    1 MYCTGGVRCERASAFLRSQG--YRDVVQLRGGIVRYLEAFPEGGFFHGKNFVFDERVSVAPAGAGRTG 66
            MYCTGG+RCE ASA++RS+G  Y +V QL GGI RYLE FP+GGFF GKNFVFD R+SVA + A   G
Sbjct:  220 MYCTGGIRCEMASAYIRSKGAGYENVFQLFGGIQRYLEQFPDGGFFRGKNFVFDHRISVASSDANILG 287          

HSP 2 Score: 61.6178 bits (148), Expect = 2.959e-7
Identity = 27/71 (38.03%), Postives = 43/71 (60.56%), Query Frame = 0
Query:  138 DVVGSCQVCAQSWDDYKSRTRCRHCRMLLLVCDACRDRPGRLVERGGERGGAGWLCEHCQPQREEREVLRS 208
            +++G+C +C  S+DDY SR RC +CRML+LVCD+C            +R G+ ++CE C+      E++ S
Sbjct:  284 NILGTCLLCGVSFDDYSSRLRCSYCRMLVLVCDSC------------QRKGSVYVCELCKNHHMGVELVSS 342          
The following BLAST results are available for this feature:
BLAST of EWM20637.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100431|gb|EWM20637.1|1.484e-177100.00Rhodanese-like protein [Nannochloropsis gaditana][more]
gi|1173954711|gb|OQS01894.1|1.227e-2065.67hypothetical protein THRCLA_05671 [Thraustotheca c... [more]
gi|813157465|ref|XP_012202081.1|1.858e-2066.67hypothetical protein SPRG_07557 [Saprolegnia paras... [more]
gi|669144906|ref|XP_008608015.1|6.751e-2066.67hypothetical protein SDRG_04132 [Saprolegnia dicli... [more]
gi|1173951753|gb|OQR99560.1|1.850e-1963.64hypothetical protein ACHHYP_05755 [Achlya hypogyna... [more]
gi|1173961803|gb|OQS07728.1|3.323e-1964.18hypothetical protein THRCLA_00275 [Thraustotheca c... [more]
gi|545363470|ref|XP_005646856.1|3.507e-1971.64Phospholipase/Carboxylesterase family protein [Coc... [more]
gi|1027089876|ref|XP_016651139.1|4.536e-1966.18PREDICTED: rhodanese-like domain-containing protei... [more]
gi|302805560|ref|XP_002984531.1|4.537e-1974.58hypothetical protein SELMODRAFT_234558 [Selaginell... [more]
gi|645221739|ref|XP_008246127.1|4.664e-1966.18PREDICTED: rhodanese-like domain-containing protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10068rna10068Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications