EWM20643.1, cds10030 (CDS) Nannochloropsis gaditana

Overview
NameEWM20643.1
Unique Namecds10030
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:31438..31440 -
Alignment locationKK037261.1:31153..31282 -
Alignment locationKK037261.1:30777..30874 -
Alignment locationKK037261.1:30274..30393 -
Alignment locationKK037261.1:30002..30127 -
Alignment locationKK037261.1:29496..29798 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20643.1
Product5 deoxy cytosolic type c protein domain containing protein
Orig transcript idgnl|cribi|Naga_100228g3.4660.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:31438..31440 -
KK037261.1supercontigKK037261.1:31153..31282 -
KK037261.1supercontigKK037261.1:30777..30874 -
KK037261.1supercontigKK037261.1:30274..30393 -
KK037261.1supercontigKK037261.1:30002..30127 -
KK037261.1supercontigKK037261.1:29496..29798 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
Homology
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|585100441|gb|EWM20643.1| (5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 531.176 bits (1367), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MSGTMSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQASTFMWSPPASFASNERQRSGCKSIIRVSLPASTTATTTRPLDPNALKGTCARPSRLSSWLTTPSDMPTKSLKTLAFQSSSLETMLGIKRTRLFLPPPCLRPSPVSRGGRMSACTSRHCWPAIGSNIEREVVVRRKKCGKEGISQDEEESEWRRRCEYSRNSARILKVFLSLFTAVLNQSSL 259
            MSGTMSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQASTFMWSPPASFASNERQRSGCKSIIRVSLPASTTATTTRPLDPNALKGTCARPSRLSSWLTTPSDMPTKSLKTLAFQSSSLETMLGIKRTRLFLPPPCLRPSPVSRGGRMSACTSRHCWPAIGSNIEREVVVRRKKCGKEGISQDEEESEWRRRCEYSRNSARILKVFLSLFTAVLNQSSL
Sbjct:    1 MSGTMSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQASTFMWSPPASFASNERQRSGCKSIIRVSLPASTTATTTRPLDPNALKGTCARPSRLSSWLTTPSDMPTKSLKTLAFQSSSLETMLGIKRTRLFLPPPCLRPSPVSRGGRMSACTSRHCWPAIGSNIEREVVVRRKKCGKEGISQDEEESEWRRRCEYSRNSARILKVFLSLFTAVLNQSSL 259          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|553189759|ref|XP_005855067.1| (5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526] >gi|422293990|gb|EKU21290.1| 5 deoxy cytosolic type c protein domain containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 155.221 bits (391), Expect = 1.735e-43
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    5 MSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQ 77
            MSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQ
Sbjct:    1 MSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQ 73          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|514700948|ref|XP_004998042.1| (hypothetical protein PTSG_11828 [Salpingoeca rosetta] >gi|326433516|gb|EGD79086.1| hypothetical protein PTSG_11828 [Salpingoeca rosetta])

HSP 1 Score: 86.2705 bits (212), Expect = 7.879e-17
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 0
Query:    1 MSGTMSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQ 77
            ++ T     RP  V+AVDLDEVLG FV+ L  FHN+ YG +  A DFHSY F  VWGGT+EE++ KV  F +S HF+
Sbjct:    4 LAETFEHGKRP--VIAVDLDEVLGYFVDALCEFHNDKYGTTYKASDFHSYTFQDVWGGTKEESSKKVHDFLESKHFK 78          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|1183487625|gb|ORZ11341.1| (hypothetical protein BCR41DRAFT_338537 [Lobosporangium transversale])

HSP 1 Score: 78.1814 bits (191), Expect = 6.786e-13
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 0
Query:   11 PPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHF 76
            P  V+AVDLDEVL      +A FHN+ YG  LT DDF SYD+  +WGGTREE+ AK   FF S +F
Sbjct:    9 PRKVIAVDLDEVLARTSLAVAEFHNDTYGTKLTMDDFISYDYTKIWGGTREESIAKWRLFFDSPYF 74          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|1032150433|gb|OAO14215.1| (hypothetical protein AV274_4138 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 75.485 bits (184), Expect = 6.905e-13
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 0
Query:   14 VVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHF 76
            ++ +DLDE LG FV  LA F+N  +G  LT DDFHSY F  VWGGT+EEA+  +  FFKS  F
Sbjct:    7 IIGLDLDECLGQFVFNLALFYNAKHGTHLTVDDFHSYSFWEVWGGTKEEASEVISEFFKSPLF 69          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|1032643575|gb|OAQ24915.1| (hypothetical protein K457DRAFT_117173 [Mortierella elongata AG-77])

HSP 1 Score: 78.1814 bits (191), Expect = 6.908e-13
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   11 PPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHF 76
            P  V+AVDLDEVL      +A FHN+ YG +LT DDF SYD+  +WGGTREE+ +K   FF S +F
Sbjct:    8 PRKVIAVDLDEVLARTTLAIADFHNDTYGTTLTMDDFISYDYTKIWGGTREESISKWRLFFDSPYF 73          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|672825604|gb|KFH70495.1| (hypothetical protein MVEG_03345 [Mortierella verticillata NRRL 6337])

HSP 1 Score: 77.0258 bits (188), Expect = 1.896e-12
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 0
Query:   11 PPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHF 76
            P  V+AVDLDEVL      +A FHN+ YG +L  DDF SYD+  +WGGTREE+ AK   FF S +F
Sbjct:    8 PRKVIAVDLDEVLAKTTLAIADFHNDTYGTTLAMDDFISYDYTKIWGGTREESIAKWRLFFDSPYF 73          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|544212447|ref|XP_005534943.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449016934|dbj|BAM80336.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 74.7146 bits (182), Expect = 3.659e-12
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 0
Query:    8 ISRPP--LVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQ 77
            I R P    +AVD+DEVL  FV  L  FHN+ YG  L A DFHSY F  VWGGT  +A  KV  FF++  FQ
Sbjct:   56 IGRKPQRTCIAVDIDEVLAFFVPELCAFHNKRYGTRLQATDFHSYRFAEVWGGTDTDAIRKVHEFFRTPAFQ 127          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|1183417677|gb|ORY42052.1| (hypothetical protein BCR33DRAFT_767372 [Rhizoclosmatium globosum])

HSP 1 Score: 75.485 bits (184), Expect = 8.055e-12
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    4 TMSSISRPPLVVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQASTFMWSPPASFAS 91
            T S+ ++P  V+AVD+DEVL   V+ L  FHNE +   L A DF+SY++  VWGGT+EE+  KV  F++S+HF  S  M   P +F +
Sbjct:  974 TTSTGTKP--VMAVDMDEVLCGTVQALVNFHNEAFDTQLKASDFNSYNYEEVWGGTKEESYEKVRQFYESTHF--SERMTVVPGAFEA 1057          
BLAST of EWM20643.1 vs. NCBI_GenBank
Match: gi|1043301982|gb|OBZ86847.1| (hypothetical protein A0J61_05100 [Choanephora cucurbitarum])

HSP 1 Score: 74.3294 bits (181), Expect = 8.861e-12
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 0
Query:   14 VVAVDLDEVLGLFVETLARFHNEVYGGSLTADDFHSYDFVHVWGGTREEANAKVLAFFKSSHFQ 77
            VVAVDLD+ L   +E+L ++HN+ Y  S T  DF++YD+  VWGGTREE+  KV  F++S HF+
Sbjct:    9 VVAVDLDQTLAHTLESLVQWHNDTYQTSYTLADFNTYDYWKVWGGTREESCLKVREFYESEHFE 72          
The following BLAST results are available for this feature:
BLAST of EWM20643.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100441|gb|EWM20643.1|0.000e+0100.005 deoxy cytosolic type c protein domain containing... [more]
gi|553189759|ref|XP_005855067.1|1.735e-43100.005 deoxy cytosolic type c protein domain containing... [more]
gi|514700948|ref|XP_004998042.1|7.879e-1753.25hypothetical protein PTSG_11828 [Salpingoeca roset... [more]
gi|1183487625|gb|ORZ11341.1|6.786e-1356.06hypothetical protein BCR41DRAFT_338537 [Lobosporan... [more]
gi|1032150433|gb|OAO14215.1|6.905e-1355.56hypothetical protein AV274_4138 [Blastocystis sp. ... [more]
gi|1032643575|gb|OAQ24915.1|6.908e-1354.55hypothetical protein K457DRAFT_117173 [Mortierella... [more]
gi|672825604|gb|KFH70495.1|1.896e-1254.55hypothetical protein MVEG_03345 [Mortierella verti... [more]
gi|544212447|ref|XP_005534943.1|3.659e-1252.78hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1183417677|gb|ORY42052.1|8.055e-1245.45hypothetical protein BCR33DRAFT_767372 [Rhizoclosm... [more]
gi|1043301982|gb|OBZ86847.1|8.861e-1251.56hypothetical protein A0J61_05100 [Choanephora cucu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10061rna10061Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications