EWM20669.1, cds10005 (CDS) Nannochloropsis gaditana

Overview
NameEWM20669.1
Unique Namecds10005
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:64778..64993 +
Alignment locationKK037260.1:65245..65322 +
Alignment locationKK037260.1:65580..65682 +
Alignment locationKK037260.1:65946..66085 +
Alignment locationKK037260.1:66346..66424 +

Link to JBrowse

Properties
Property NameValue
End range.
End range66424
Protein idEWM20669.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100766g1.3157.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:64778..64993 +
KK037260.1supercontigKK037260.1:65245..65322 +
KK037260.1supercontigKK037260.1:65580..65682 +
KK037260.1supercontigKK037260.1:65946..66085 +
KK037260.1supercontigKK037260.1:66346..66424 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
Homology
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|585100475|gb|EWM20669.1| (hypothetical protein Naga_100766g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 427.943 bits (1099), Expect = 8.228e-152
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MHTCHDSSSTFLFYLFLIGHSLTSFCRQAQARATSCKNKGPNKKIKYRPMTPPAVIKETVLPADETVAKKQKIANGHGKASAAAADSQAAVTVLNDENVNTPDARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            MHTCHDSSSTFLFYLFLIGHSLTSFCRQAQARATSCKNKGPNKKIKYRPMTPPAVIKETVLPADETVAKKQKIANGHGKASAAAADSQAAVTVLNDENVNTPDARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD
Sbjct:    1 MHTCHDSSSTFLFYLFLIGHSLTSFCRQAQARATSCKNKGPNKKIKYRPMTPPAVIKETVLPADETVAKKQKIANGHGKASAAAADSQAAVTVLNDENVNTPDARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|585106619|gb|EWM24986.1| (Cupin, RmlC-type [Nannochloropsis gaditana])

HSP 1 Score: 126.331 bits (316), Expect = 2.027e-31
Identity = 63/103 (61.17%), Postives = 75/103 (72.82%), Query Frame = 0
Query:  103 DARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            D  IYEY SA +P + PIP LA     H  GPTRVI FDL   + V Y+ATSPNLLAAY+R+L GES+ETQA ATSQAFYVIRG+G S+S EH  ++ +K GD
Sbjct:   21 DGIIYEYTSAADPSVSPIPYLALGSSHHEEGPTRVIPFDLGEKLDVPYQATSPNLLAAYIRILPGESLETQARATSQAFYVIRGRGVSSSQEHG-EIRWKAGD 122          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|676382761|ref|XP_009034659.1| (hypothetical protein AURANDRAFT_36501 [Aureococcus anophagefferens] >gi|323455241|gb|EGB11110.1| hypothetical protein AURANDRAFT_36501 [Aureococcus anophagefferens])

HSP 1 Score: 125.561 bits (314), Expect = 1.197e-30
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0
Query:  104 ARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            ARIYEY +A NPD+P IP L HP  LH +GPTRVI FDLS+ +G     TSPNL+A+YVRVL GE I T A ATSQA+YVIRG G ST++EH  +VT+  GD
Sbjct:   65 ARIYEYGAAANPDLPAIPVLVHPASLHEAGPTRVIPFDLSSMIGGAAPCTSPNLMASYVRVLVGERISTAALATSQAYYVIRG-GGSTTSEHG-RVTWNTGD 164          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|612392730|ref|XP_007511885.1| (predicted protein [Bathycoccus prasinos] >gi|424513351|emb|CCO65973.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 125.176 bits (313), Expect = 2.347e-30
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 0
Query:  103 DARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            DARIYEY SA NPDM PIP L HPP+ H  G TR+I FD+   + +D + TSPNL+A+++R+  GE++ET A ATSQAFYVIRG G +TS EH   + +  GD
Sbjct:   89 DARIYEYGSAANPDMKPIPVLVHPPDWHERGETRIIPFDIDDFLEIDKQCTSPNLMASFIRICEGENLETTANATSQAFYVIRGSGCTTS-EHG-TINWDTGD 189          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|693500894|emb|CEF97267.1| (RmlC-like jelly roll fold [Ostreococcus tauri])

HSP 1 Score: 122.479 bits (306), Expect = 1.495e-29
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 0
Query:  104 ARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            A I+EY SA NPDM PIP L HP +LH SG TRVI FD++  + +    TSPNL+A++VR+++GESIET A ATSQAFYVIRG G+S S EH  ++++  GD
Sbjct:   35 AEIFEYGSAANPDMRPIPVLVHPADLHESGETRVIPFDINDFLDITESCTSPNLMASFVRIVKGESIETSAKATSQAFYVIRGSGESES-EHG-KISWSTGD 134          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|145344452|ref|XP_001416746.1| (predicted protein, partial [Ostreococcus lucimarinus CCE9901] >gi|144576972|gb|ABO95039.1| predicted protein, partial [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 120.168 bits (300), Expect = 1.692e-29
Identity = 57/102 (55.88%), Postives = 75/102 (73.53%), Query Frame = 0
Query:  104 ARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            A I+EY SA NPDM PIP L HPP+LH  G TRVI FD++  + ++   TSPNL+A++VR+++GE+IET A ATSQAFYVIRG G S   EH  ++++  GD
Sbjct:    1 ASIFEYGSAANPDMRPIPVLVHPPDLHERGETRVIPFDINDFLEIEESCTSPNLMASFVRIVKGEAIETSANATSQAFYVIRGNGTSEG-EHG-KISWSTGD 100          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|255073367|ref|XP_002500358.1| (predicted protein [Micromonas commoda] >gi|226515621|gb|ACO61616.1| predicted protein [Micromonas commoda])

HSP 1 Score: 121.324 bits (303), Expect = 5.591e-29
Identity = 60/102 (58.82%), Postives = 76/102 (74.51%), Query Frame = 0
Query:  104 ARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            A I+EY +A NPDM PIP L HPP LH  G TR+I FD++  + ++   TSPNL+A++VRV  GESIET+A ATSQAFYVIRG G STS+EH   V++ +GD
Sbjct:   45 ADIFEYGAAANPDMAPIPVLVHPPSLHEEGETRIIPFDINDCLDIETACTSPNLMASFVRVRVGESIETKANATSQAFYVIRGTG-STSSEHG-TVSWGDGD 144          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|308802073|ref|XP_003078350.1| (unnamed protein product [Ostreococcus tauri])

HSP 1 Score: 121.324 bits (303), Expect = 9.396e-29
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 0
Query:  104 ARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            A I+EY SA NPDM PIP L HP +LH SG TRVI FD++  + +    TSPNL+A++VR+++GESIET A ATSQAFYVIRG G+S S EH  ++++  GD
Sbjct:  111 AEIFEYGSAANPDMRPIPVLVHPADLHESGETRVIPFDINDFLDITESCTSPNLMASFVRIVKGESIETSAKATSQAFYVIRGSGESES-EHG-KISWSTGD 210          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|1199288901|gb|OUS44037.1| (RmlC-like cupin domain-containing protein [Ostreococcus tauri])

HSP 1 Score: 119.013 bits (297), Expect = 6.123e-28
Identity = 58/102 (56.86%), Postives = 75/102 (73.53%), Query Frame = 0
Query:  104 ARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            A I+EY SA NPDM PIP L HP +LH  G TRVI FD++  + +    TSPNL+A++VR+++GESIET A ATSQAFYVIRG G+S S EH  ++++  GD
Sbjct:  111 AEIFEYGSAANPDMRPIPVLVHPADLHECGETRVIPFDINDFLDITESCTSPNLMASFVRIVKGESIETSAKATSQAFYVIRGSGESES-EHG-KISWSTGD 210          
BLAST of EWM20669.1 vs. NCBI_GenBank
Match: gi|659861639|ref|WP_029908964.1| (dioxygenase [Hydrogenovibrio marinus] >gi|641455480|gb|KDN95146.1| dioxygenase [Hydrogenovibrio marinus])

HSP 1 Score: 111.309 bits (277), Expect = 4.193e-26
Identity = 55/102 (53.92%), Postives = 70/102 (68.63%), Query Frame = 0
Query:  104 ARIYEYVSACNPDMPPIPALAHPPELHASGPTRVIAFDLSAHMGVDYEATSPNLLAAYVRVLRGESIETQACATSQAFYVIRGQGKSTSTEHSLQVTYKEGD 205
            A   EY+SA NP MP I   +    LH SGPTR+I FDLS  + +DY ATSPNLLA +VR+ +GESI+T A  TSQ FYVI GQGK+  +E +++  +K GD
Sbjct:   22 ADFKEYMSAVNPPMPKIDVASFAASLHQSGPTRIIPFDLSKSLEIDYPATSPNLLANFVRICKGESIKTSAKVTSQMFYVINGQGKTQMSEGTIE--WKTGD 121          
The following BLAST results are available for this feature:
BLAST of EWM20669.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100475|gb|EWM20669.1|8.228e-152100.00hypothetical protein Naga_100766g1, partial [Nanno... [more]
gi|585106619|gb|EWM24986.1|2.027e-3161.17Cupin, RmlC-type [Nannochloropsis gaditana][more]
gi|676382761|ref|XP_009034659.1|1.197e-3062.75hypothetical protein AURANDRAFT_36501 [Aureococcus... [more]
gi|612392730|ref|XP_007511885.1|2.347e-3056.31predicted protein [Bathycoccus prasinos] >gi|42451... [more]
gi|693500894|emb|CEF97267.1|1.495e-2957.84RmlC-like jelly roll fold [Ostreococcus tauri][more]
gi|145344452|ref|XP_001416746.1|1.692e-2955.88predicted protein, partial [Ostreococcus lucimarin... [more]
gi|255073367|ref|XP_002500358.1|5.591e-2958.82predicted protein [Micromonas commoda] >gi|2265156... [more]
gi|308802073|ref|XP_003078350.1|9.396e-2957.84unnamed protein product [Ostreococcus tauri][more]
gi|1199288901|gb|OUS44037.1|6.123e-2856.86RmlC-like cupin domain-containing protein [Ostreoc... [more]
gi|659861639|ref|WP_029908964.1|4.193e-2653.92dioxygenase [Hydrogenovibrio marinus] >gi|64145548... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10036rna10036Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications