|
Gene prediction for N. oceanica CCMP1779 |
JGI Annotation Pipeline |
Nanoce1779_2 |
|
InterPro analysis for N. oceanica IMET1 genes |
InterProScan |
IMET1v2.protein-noStar.fa |
|
InterPro analysis for N. gaditana B-31 |
InterProScan |
NgB31_proteins |
|
InterPro analysis for N. oceanica IMET1 |
interproscan |
IMET1v2.protein-noStar.fa |
|
Genome assembly for N. salina CCMP1776 (version 2) |
HGAP3, SSPACE |
PacBio Sequel 100x 4G, illumina PE |
|
Gennome assembly for N. gaditana CCMP1894 |
HGAP |
PacBio, ~288.0X |
|
Gene prediction for N. gaditana B-31 |
GCA_000569095.1_NagaB31_1.0 |
GCA_000569095.1_NagaB31_1.0 |
|
Gennome assembly for N. oceanica CCMP1779 |
Falcon |
PacBio, ~108.51X |
|
Homology annotation for N. oceanica IMET1 |
diamond blastp |
IMET1v2.protein.fa |
|
BLASTP analysis of N. oceanica IMET1 genes |
diamond |
IMET1v2.protein-noStar.fa |
|
Gennome assembly for N. oceanica LAMB2011 |
Canu |
PacBio Sequel, ~113X |
|
Gene prediction for N. oceanica IMET1 |
BRAKER1, PASA2 |
de novo, RNA-seq |
|
BLAST analysis for N. gaditana B-31 |
blastp |
NagaB31-proteins |
|
GO annotation for N. salina CCMP1776 v2 |
BLAST2GO, InterProScan |
Gene model of N. salina CCMP1776 v2 |
|
GO annotation for IMET1v2 genes |
BLAST2GO |
IMET1v2_genes.gaf |
|
GO annotation for N. gaditana B31 |
Blast2GO |
NgB31_proteins |
|
Gene prediction for N. salina CCMP1776 (version 2) |
augustus |
augustus |