1. Genome
  2. N. oceanica IMET1

N. oceanica IMET1

Overview
Full NameNannochloropsis oceanica subspecies IMET1
GenusNannochloropsis
Speciesoceanica
Infraspecific Ranksubspecies
Infraspecific NameIMET1
Common NameN. oceanica IMET1
AbbreviationNoIMET1

Gene locus nomenclature for N. oceanica IMET1 (IMET1v2):

For nuclear genes:

  • NO (Nannochlropsis oceanica);
  • 01,02,03-30 (chromosome number);
  • G (gene);
  • 01230 (five-digit code, the first four-digit is numbered from top/north to bottom/south of chromosome, the last 0 is reserved for new locus).

Mitochondrial and chloroplast genes were retrieved from Genbank (accessions KC568456.1 and KC598086.1) and prefixed with "mt-" and "cp-" respectively.

Biomaterial Browser
The following browser provides a list of biomaterials associated with this organism.
Biomaterial NameOrganismBiomaterial ProviderTreatment
SRR16278128Nannochloropsis oceanica (N. oceanica IMET1)SCC, Qibebt, CASM4_Rep3
SRR16278127Nannochloropsis oceanica (N. oceanica IMET1)SCC, Qibebt, CASM6_Rep1
NrP3Rep1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrepP3
NrP3Rep2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrepP3
NrP3Rep3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrepP3
NrP4Rep1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrepP4
NrP4Rep2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrepP4
NrP4Rep3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrepP4
NdP3Rep1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdepP3
NdP3Rep2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdepP3
GO Analysis Reports
Any analysis with GO results related to this organism are available for viewing. For further information, see the analysis information page.
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Term Information
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS50,403
polypeptide12,602
mRNA12,442
gene10,493
syntenic_region409
exon61
tRNA53
genome30
rRNA8
region2
mitochondrial_chromosome1
chloroplast_chromosome1
Stocks
This organism is associated with 78 stock(s):
NameType
1-acyl-sn-glycerol-3-phosphate acyltransferase knockoutCRISPR_gene_knockout
acyl CoA binding protein,putative knockoutCRISPR_gene_knockout
acyltransferase knockoutCRISPR_gene_knockout
apicoplast 1-acyl-sn-glycerol-3-phosphate acyltransferase knockoutCRISPR_gene_knockout
beta-ketoacyl synthase knockoutCRISPR_gene_knockout
Beta-ketoacyl synthase knockoutCRISPR_gene_knockout
CHP-g2454 knockoutCRISPR_gene_knockout
dihydrolipoamide acetyltransferase knockoutCRISPR_gene_knockout
Dihydrolipoamide acetyltransferase knockoutCRISPR_gene_knockout
fatty acid-ACP thioesterase knockoutCRISPR_gene_knockout
glycerol-3-phosphate dehydrogenase knockoutCRISPR_gene_knockout
glycerol-3-phosphate dehydrogenase knockoutCRISPR_gene_knockout
glycerol kinase knockoutCRISPR_gene_knockout
LHC-g1251 knockdowngene_RNAi_knockdown
LHC-g1546 knockoutCRISPR_gene_knockout
LHC-g240 KnockdoutCRISPR_gene_knockout
LHC-g240 Knockdowngene_RNAi_knockdown
LHC-g503 knockoutCRISPR_gene_knockout
LHC-g6882 knockoutCRISPR_gene_knockout
LHC-g9733 knockoutCRISPR_gene_knockout
long chain acyl-CoA synthetase knockoutCRISPR_gene_knockout
long-chain fatty-acid--CoA ligase knockoutCRISPR_gene_knockout
long-chain-fatty-acid--CoA ligase knockoutCRISPR_gene_knockout
LSMT knockoutCRISPR_gene_knockout
LSMT subcellular localizationgene_subcellular_localization

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