1. Genome
  2. N. oceanica IMET1

N. oceanica IMET1

Overview
Full NameNannochloropsis oceanica subspecies IMET1
GenusNannochloropsis
Speciesoceanica
Infraspecific Ranksubspecies
Infraspecific NameIMET1
Common NameN. oceanica IMET1
AbbreviationNoIMET1

Gene locus nomenclature for N. oceanica IMET1 (IMET1v2):

For nuclear genes:

  • NO (Nannochlropsis oceanica);
  • 01,02,03-30 (chromosome number);
  • G (gene);
  • 01230 (five-digit code, the first four-digit is numbered from top/north to bottom/south of chromosome, the last 0 is reserved for new locus).

Mitochondrial and chloroplast genes were retrieved from Genbank (accessions KC568456.1 and KC598086.1) and prefixed with "mt-" and "cp-" respectively.

Biomaterial Browser
The following browser provides a list of biomaterials associated with this organism.
Biomaterial NameOrganismBiomaterial ProviderTreatment
Nrep_48h_3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrep_48h
Nrep_6h_1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrep_6h
Nrep_6h_2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrep_6h
Nrep_6h_3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNrep_6h
WL_0h_1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumWhite_0h
WL_0h_2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumWhite_0h
WL_0h_3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumWhite_0h
WL_12hb_1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumBlue_12h
WL_12hb_2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumBlue_12h
WL_12hb_3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumBlue_12h
GO Analysis Reports
Any analysis with GO results related to this organism are available for viewing. For further information, see the analysis information page.
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Term Information
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS50,403
polypeptide12,602
mRNA12,442
gene10,493
syntenic_region409
exon61
tRNA53
genome30
rRNA8
region2
mitochondrial_chromosome1
chloroplast_chromosome1
Stocks
This organism is associated with 78 stock(s):
NameType
NoDGAT2C knockdowngene_RNAi_knockdown
NoDGAT2C overexpressiongene_overexpression
NoDGAT2C overexpressiongene_overexpression
NoDGAT2D knockdowngene_RNAi_knockdown
NoDGAT2D knockdowngene_RNAi_knockdown
NoDGAT2D overexpressiongene_overexpression
NoDGAT2D overexpressiongene_overexpression
NoDGAT2J knockdowngene_RNAi_knockdown
NoDGAT2J knockdowngene_RNAi_knockdown
NoDGAT2J overexpressiongene_overexpression
NoDGAT2J overexpressiongene_overexpression
NoDGAT2J subcellular localizationgene_subcellular_localization
NoDGAT2J subcellular localizationgene_subcellular_localization
NoDGAT2K knockdowngene_RNAi_knockdown
NoDGAT2K knockdowngene_RNAi_knockdown
NoDGAT2K overexpressiongene_overexpression
NoDGAT2K overexpressiongene_overexpression
NoDGAT2K subcellular localizationgene_subcellular_localization
NoDGAT2K subcellular localizationgene_subcellular_localization
PFfh-g-g4625 knockoutCRISPR_gene_knockout
PFtsY-g1732 knockdowngene_RNAi_knockdown
phosphatidic acid phosphatase knockoutCRISPR_gene_knockout
RLRP-g4928 knockoutCRISPR_gene_knockout
SDPR-g876 knockdowngene_RNAi_knockdown
SRP9-g7585 knockdowngene_RNAi_knockdown

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