1. Genome
  2. N. oceanica IMET1

N. oceanica IMET1

Overview
Full NameNannochloropsis oceanica subspecies IMET1
GenusNannochloropsis
Speciesoceanica
Infraspecific Ranksubspecies
Infraspecific NameIMET1
Common NameN. oceanica IMET1
AbbreviationNoIMET1

Gene locus nomenclature for N. oceanica IMET1 (IMET1v2):

For nuclear genes:

  • NO (Nannochlropsis oceanica);
  • 01,02,03-30 (chromosome number);
  • G (gene);
  • 01230 (five-digit code, the first four-digit is numbered from top/north to bottom/south of chromosome, the last 0 is reserved for new locus).

Mitochondrial and chloroplast genes were retrieved from Genbank (accessions KC568456.1 and KC598086.1) and prefixed with "mt-" and "cp-" respectively.

Biomaterial Browser
The following browser provides a list of biomaterials associated with this organism.
Biomaterial NameOrganismBiomaterial ProviderTreatment
Ndep_12h_3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_12h
Ndep_240h_4Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_240h
Ndep_240h_6Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_240h
Ndep_240h_7Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_240h
Ndep_24h_1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_24h
Ndep_24h_2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_24h
Ndep_24h_3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_24h
Ndep_3h_1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_3h
Ndep_3h_2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_3h
Ndep_3h_3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumNdep_3h
GO Analysis Reports
Any analysis with GO results related to this organism are available for viewing. For further information, see the analysis information page.
Close [X]
Term Information
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS50,403
polypeptide12,602
mRNA12,442
gene10,493
syntenic_region409
exon61
tRNA53
genome30
rRNA8
region2
mitochondrial_chromosome1
chloroplast_chromosome1
Stocks
This organism is associated with 78 stock(s):
NameType
lysophosphatidic acid acyltransferase LPAAT knockoutCRISPR_gene_knockout
malonyl-CoA:ACP transacylase knockoutCRISPR_gene_knockout
membrane acyl-CoA binding protein knockoutCRISPR_gene_knockout
mono-or diacylglycerol acyltransferase type 2 knockoutCRISPR_gene_knockout
NoBCT1 knockoutCRISPR_gene_knockout
NoBCT1 knockoutCRISPR_gene_knockout
NoBCT1subcellular localizationgene_subcellular_localization
NoBCT1subcellular localizationgene_subcellular_localization
NoBCT2 knockoutCRISPR_gene_knockout
NoBCT2 knockoutCRISPR_gene_knockout
NoCA1 knockoutCRISPR_gene_knockout
NoCA1 knockoutCRISPR_gene_knockout
NoCA1 subcellular localizationgene_subcellular_localization
NoCA1 subcellular localizationgene_subcellular_localization
NoCA3 knockoutCRISPR_gene_knockout
NoCA3 knockoutCRISPR_gene_knockout
NoCA3 subcellular localizationgene_subcellular_localization
NoCA3 subcellular localizationgene_subcellular_localization
NoCA4 subcellular localizationgene_subcellular_localization
NoCA4 subcellular localizationgene_subcellular_localization
NoDGAT2A knockdowngene_RNAi_knockdown
NoDGAT2A knockdowngene_RNAi_knockdown
NoDGAT2A overexpressiongene_overexpression
NoDGAT2A overexpressiongene_overexpression
NoDGAT2C knockdowngene_RNAi_knockdown

Pages