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  2. N. oceanica IMET1

N. oceanica IMET1

Overview
Full NameNannochloropsis oceanica subspecies IMET1
GenusNannochloropsis
Speciesoceanica
Infraspecific Ranksubspecies
Infraspecific NameIMET1
Common NameN. oceanica IMET1
AbbreviationNoIMET1

Gene locus nomenclature for N. oceanica IMET1 (IMET1v2):

For nuclear genes:

  • NO (Nannochlropsis oceanica);
  • 01,02,03-30 (chromosome number);
  • G (gene);
  • 01230 (five-digit code, the first four-digit is numbered from top/north to bottom/south of chromosome, the last 0 is reserved for new locus).

Mitochondrial and chloroplast genes were retrieved from Genbank (accessions KC568456.1 and KC598086.1) and prefixed with "mt-" and "cp-" respectively.

Biomaterial Browser
The following browser provides a list of biomaterials associated with this organism.
Biomaterial NameOrganismBiomaterial ProviderTreatment
SRR16278149Nannochloropsis oceanica (N. oceanica IMET1)SCC, Qibebt, CASWT_Rep2
SRR16278138Nannochloropsis oceanica (N. oceanica IMET1)SCC, Qibebt, CASWT_Rep3
WT-1-0hNannochloropsis oceanica (N. oceanica IMET1)QibebtControl_0h
WT-1-24hNannochloropsis oceanica (N. oceanica IMET1)QibebtHeat_24h
WT-1-3hNannochloropsis oceanica (N. oceanica IMET1)QibebtHeat_3h
WT-1-48hNannochloropsis oceanica (N. oceanica IMET1)QibebtHeat_48h
WT-2-0hNannochloropsis oceanica (N. oceanica IMET1)QibebtControl_0h
WT-2-24hNannochloropsis oceanica (N. oceanica IMET1)QibebtHeat_24h
WT-2-3hNannochloropsis oceanica (N. oceanica IMET1)QibebtHeat_3h
WT-2-48hNannochloropsis oceanica (N. oceanica IMET1)QibebtHeat_48h
GO Analysis Reports
Any analysis with GO results related to this organism are available for viewing. For further information, see the analysis information page.
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Term Information
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS50,403
polypeptide12,602
mRNA12,442
gene10,493
syntenic_region409
exon61
tRNA53
genome30
rRNA8
region2
mitochondrial_chromosome1
chloroplast_chromosome1
Stocks
This organism is associated with 78 stock(s):
NameType
lysophosphatidic acid acyltransferase LPAAT knockoutCRISPR_gene_knockout
malonyl-CoA:ACP transacylase knockoutCRISPR_gene_knockout
membrane acyl-CoA binding protein knockoutCRISPR_gene_knockout
mono-or diacylglycerol acyltransferase type 2 knockoutCRISPR_gene_knockout
NoBCT1 knockoutCRISPR_gene_knockout
NoBCT1 knockoutCRISPR_gene_knockout
NoBCT1subcellular localizationgene_subcellular_localization
NoBCT1subcellular localizationgene_subcellular_localization
NoBCT2 knockoutCRISPR_gene_knockout
NoBCT2 knockoutCRISPR_gene_knockout
NoCA1 knockoutCRISPR_gene_knockout
NoCA1 knockoutCRISPR_gene_knockout
NoCA1 subcellular localizationgene_subcellular_localization
NoCA1 subcellular localizationgene_subcellular_localization
NoCA3 knockoutCRISPR_gene_knockout
NoCA3 knockoutCRISPR_gene_knockout
NoCA3 subcellular localizationgene_subcellular_localization
NoCA3 subcellular localizationgene_subcellular_localization
NoCA4 subcellular localizationgene_subcellular_localization
NoCA4 subcellular localizationgene_subcellular_localization
NoDGAT2A knockdowngene_RNAi_knockdown
NoDGAT2A knockdowngene_RNAi_knockdown
NoDGAT2A overexpressiongene_overexpression
NoDGAT2A overexpressiongene_overexpression
NoDGAT2C knockdowngene_RNAi_knockdown

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