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  2. N. oceanica IMET1

N. oceanica IMET1

Overview
Full NameNannochloropsis oceanica subspecies IMET1
GenusNannochloropsis
Speciesoceanica
Infraspecific Ranksubspecies
Infraspecific NameIMET1
Common NameN. oceanica IMET1
AbbreviationNoIMET1

Gene locus nomenclature for N. oceanica IMET1 (IMET1v2):

For nuclear genes:

  • NO (Nannochlropsis oceanica);
  • 01,02,03-30 (chromosome number);
  • G (gene);
  • 01230 (five-digit code, the first four-digit is numbered from top/north to bottom/south of chromosome, the last 0 is reserved for new locus).

Mitochondrial and chloroplast genes were retrieved from Genbank (accessions KC568456.1 and KC598086.1) and prefixed with "mt-" and "cp-" respectively.

Biomaterial Browser
The following browser provides a list of biomaterials associated with this organism.
Biomaterial NameOrganismBiomaterial ProviderTreatment
C_3h_l1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumLow_3h
C_3h_l3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumLow_3h
C_6h_h1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumHigh_6h
C_6h_h2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumHigh_6h
C_6h_h3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumHigh_6h
C_6h_l1Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumLow_6h
C_6h_l2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumLow_6h
C_6h_l3Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumLow_6h
C_3h_l2Nannochloropsis oceanica (N. oceanica IMET1)Ruhr University BochumLow_3h
SRR16278150Nannochloropsis oceanica (N. oceanica IMET1)SCC, Qibebt, CASWT_Rep1
GO Analysis Reports
Any analysis with GO results related to this organism are available for viewing. For further information, see the analysis information page.
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Term Information
Feature Summary
The following features are currently present for this organism
Feature TypeCount
CDS50,403
polypeptide12,602
mRNA12,442
gene10,493
syntenic_region409
exon61
tRNA53
genome30
rRNA8
region2
mitochondrial_chromosome1
chloroplast_chromosome1
Stocks
This organism is associated with 78 stock(s):
NameType
1-acyl-sn-glycerol-3-phosphate acyltransferase knockoutCRISPR_gene_knockout
acyl CoA binding protein,putative knockoutCRISPR_gene_knockout
acyltransferase knockoutCRISPR_gene_knockout
apicoplast 1-acyl-sn-glycerol-3-phosphate acyltransferase knockoutCRISPR_gene_knockout
beta-ketoacyl synthase knockoutCRISPR_gene_knockout
Beta-ketoacyl synthase knockoutCRISPR_gene_knockout
CHP-g2454 knockoutCRISPR_gene_knockout
dihydrolipoamide acetyltransferase knockoutCRISPR_gene_knockout
Dihydrolipoamide acetyltransferase knockoutCRISPR_gene_knockout
fatty acid-ACP thioesterase knockoutCRISPR_gene_knockout
glycerol-3-phosphate dehydrogenase knockoutCRISPR_gene_knockout
glycerol-3-phosphate dehydrogenase knockoutCRISPR_gene_knockout
glycerol kinase knockoutCRISPR_gene_knockout
LHC-g1251 knockdowngene_RNAi_knockdown
LHC-g1546 knockoutCRISPR_gene_knockout
LHC-g240 KnockdoutCRISPR_gene_knockout
LHC-g240 Knockdowngene_RNAi_knockdown
LHC-g503 knockoutCRISPR_gene_knockout
LHC-g6882 knockoutCRISPR_gene_knockout
LHC-g9733 knockoutCRISPR_gene_knockout
long chain acyl-CoA synthetase knockoutCRISPR_gene_knockout
long-chain fatty-acid--CoA ligase knockoutCRISPR_gene_knockout
long-chain-fatty-acid--CoA ligase knockoutCRISPR_gene_knockout
LSMT knockoutCRISPR_gene_knockout
LSMT subcellular localizationgene_subcellular_localization

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