Genome assembly for N. salina CCMP1776 (version 2)

Genome assembly from Korean Nannochloropsis WebDB.

① pacbio long-read assembly (HGAP3) : 282 config (25.5M)

② illumina short-read assembly : 194 contig (27.6M)

③ paired-end contig libraries by contig of illumina 

(libraries : 500bp , 800bp, 2kbp , 5kbp, 8kbp, 10kbp, 15kbp, 20kbp,....)

④ scaffolding by SSPACE v2.3 : pacbio + libraries

(result : 105 scaffolds (28.2M)) 

⑤ manual gap close

⑥ removal contaminated sample

⑦ final result : 104 scaffolds (24.7M)

Raw sequencing reads can be obtained by requesting to Byeong-ryool Jeong (bjeong@unist.ac.kr).