jgi.p|Nanoce1779_2|535926, mRNA_1654 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|535926
Unique Name	mRNA_1654
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1340
Alignment location	scaffold_1:1165801..1167456 -

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Properties


Property Name	Value
TranscriptId	536012
Track	FilteredModels2
ProteinId	535926

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1165801..1167456 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535926	gene_1654	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535926	mRNA_1654-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1654	CDS_1654	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1165801..1167456-
coding sequence from alignment at scaffold_1:1165801..1167456-

mRNA sequence

>mRNA_1654 ID=mRNA_1654|Name=jgi.p|Nanoce1779_2|535926|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp
ACAGACGACCCCCAGTAAAACATAGACGGCCATGGCGAGCGATGAGGACG
AAATGCTGCCGCAGCTGCTGGAGCTGGGCGGGGACTCAGAGGTATTTGGT
CTAGACATGCACCCTACGCAGGATTTGATCGCCTTAGGCCTGGTGGATGG
CCGGGCTTTGCTGTATTCTTACCAGGGGAAAGGAGAGACTTGCACGCTGA
ACACAGACCTGGGGACTCACAAGGAAGCTTGCCGTGCTGTGCTGTTTGAG
CCTACCATGGGTTCCCGTGTCTACACCGCATCATCGGACAAAGGCATTCG
AACCATCGATATGGCTACGGGCAAGGTGGCATGGGATGTAACTGACGCGC
ACGATGAAGCGGTCAATTGCTTGACCTTCTGGGAGGAAGGGGGGTTGCTG
GTGTCGGGGGACGACATAGGAGGGGTGAAGCTATGGGACTGCCGAGAGGG
CCGTAAGAAGGCCGTGGCATCTATTCAGAAACATGAAGATTTTATCTCAG
ATCTGCTCGTGCATGAAGGGATGTTGTTCGGGGCAAGTGGGGATAACACC
TTGTCGACCTATGATTTGAAGCACAGGAAGTTGGTGGCAAGAACGATGGA
TCAGGAAGATGAGTTGTTGAGTCTCTCGGTGTTGAAACATGGGAAGAAGA
TATTAGCGGGGACACAAAGTGGGGTACTGCTAGTGTATTCGTGGGGAGAG
TGGATGAATTGCACGGATCGGTTCGTCGGTCATCCTGAGACGGTGGAGGC
CTTGGTCAAGGTGGATGAGGAGACGCTGCTCACCGGGTCGAGTGACGGGT
TGATTCGTTTGTGTTCGGTATTGCCAAATAAATTGTTGGGTGTGCTGGGC
TCCCACGACGAATTCCCGGTGGAAAGGATGAAGATGGCATGGGACCGGCG
GGTCCTCGCTTCCATAGCACATGATAGTTTAGTCCGGTTTTGGGATATGA
AGGACGAGGACGAAGATGATAAAGGTGATGAAAATGGAGAGGAGGGAGAG
GATGAGGACGGCGCAGGTGGCAATAGCGCCAGTAGCAGCAGCAGTGAGGA
GCAAGAGCCCGGGAAGAAAGGAGGGCAGCAGAAGGGCAGTAAAAAAATGC
GGATGACGGCTGCCGAGTCGTTCTTCAAGGACCTGTAAGGCTGGGTGGAG
TAAAGTTTATCAATGTGTGAAAATAGGTAAATGACCAAAATGGAAACCGA
TTGAGGAGGGGATGGAGGGCATCAGAGAAAAACTAAAGAAAAGAGGGCTG
CGAGAACACCCGGCAGACTCTGAGTAGCAGAACCAATGCTACTACATCAG
CACTTCAGCTGATCAAAAATAAGATGAATGAACCGACTTG

protein sequence of jgi.p|Nanoce1779_2|535926

>mRNA_1654-protein ID=mRNA_1654-protein|Name=jgi.p|Nanoce1779_2|535926|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MASDEDEMLPQLLELGGDSEVFGLDMHPTQDLIALGLVDGRALLYSYQGK
GETCTLNTDLGTHKEACRAVLFEPTMGSRVYTASSDKGIRTIDMATGKVA
WDVTDAHDEAVNCLTFWEEGGLLVSGDDIGGVKLWDCREGRKKAVASIQK
HEDFISDLLVHEGMLFGASGDNTLSTYDLKHRKLVARTMDQEDELLSLSV
LKHGKKILAGTQSGVLLVYSWGEWMNCTDRFVGHPETVEALVKVDEETLL
TGSSDGLIRLCSVLPNKLLGVLGSHDEFPVERMKMAWDRRVLASIAHDSL
VRFWDMKDEDEDDKGDENGEEGEDEDGAGGNSASSSSSEEQEPGKKGGQQ
KGSKKMRMTAAESFFKDL*

mRNA from alignment at scaffold_1:1165801..1167456-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1654 ID=mRNA_1654|Name=jgi.p|Nanoce1779_2|535926|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp|location=Sequence derived from alignment at scaffold_1:1165801..1167456- (Nannochloropsis oceanica)
ACAGACGACCCCCAGTAAAACATAGACGGCCATGGCGAGCGATGAGGACG
AAATGCTGCCGCAGGTAAGGCCTGAAAGGCTTCCAAATCCCACGCAATCG
ATATCTGACCTCCCCACCCTCGCCACGCACACCATTCCCAAATAAGCTGC
TGGAGCTGGGCGGGGACTCAGAGGTATTTGGTCTAGACATGCACCCTACG
CAGGATTTGATCGCCTTAGGCCTGGTGGATGGCCGGGCTTTGCTGTATTC
TTACCAGGGGAAAGGAGAGACTTGCACGCTGAACACAGACCTGGGGACTC
ACAAGGAAGCTTGCCGTGCTGTGCTGTTTGAGCCTACCATGGGTTCCCGT
GTCTACACCGCATCATCGGACAAAGGCATTCGAACCATCGATATGGCTAC
GGGCAAGGTGGCATGGGATGTAACTGACGCGCACGATGAAGCGGTCAATT
GCTTGACCTTCTGGGAGGAAGGGGGGTTGCTGGTGTCGGGGGACGACATA
GGAGGGGTGAAGCTATGGGACTGCCGAGAGGGCCGTAAGAAGGCCGTGGC
ATCTATTCAGAAACATGAAGATTTTATCTCAGATCTGCTCGTGCATGAAG
GGATGTTGTTCGGGGCAAGTGGGGATAACACCTTGTCGACCTATGATTTG
AAGCACAGGAAGTTGGTGGCAAGAACGATGGATCAGGAAGATGAGTTGTT
GAGTCTCTCGGTGTTGAAACATGGGAAGAAGATATTAGCGGGGACACAAA
GTGGGGTACTGCTAGTGTATTCGTGGGGAGAGTGGATGAATTGCACGGAT
CGGTTCGTCGGTCATCCTGAGACGGTGGAGGCCTTGGTCAAGGTGGATGA
GGAGACGCTGCTCACCGGGTCGAGTGACGGGTTGATTCGTTTGTGTTCGG
TATTGCCAAATAAATTGTTGGGTGTGCTGGGCTCCCACGACGAATTCCCG
GTGGAAAGGATGAAGATGGCATGGGACCGGCGGGTCCTCGCTTCCATAGC
ACATGATAGTTTAGTCCGGTTTTGGGATATGAGTATCTTGGAGGAAGATG
AGGAGGACGAGGAGGATGAGAAAGGGGTTGAGGAGGATGAAATTGAGAAG
AAGGAGATGAGTGAAAGGAATAGTGGGAGGAGGAGAAAGGTGTCTGCGGC
AGTGGCGGCGGCGATGGCGACGAACGGGGGAAAGGAAAACAGTGGGGGTA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGAAGTGAT
GATGAAGAGGATGAAGAGGACGAGGACGAAGATGATAAAGGTGATGAAAA
TGGAGAGGAGGGAGAGGATGAGGACGGCGCAGGTGGCAATAGCGCCAGTA
GCAGCAGCAGTGAGGAGCAAGAGCCCGGGAAGAAAGGAGGGCAGCAGAAG
GGCAGTAAAAAAATGCGGATGACGGCTGCCGAGTCGTTCTTCAAGGACCT
GTAAGGCTGGGTGGAGTAAAGTTTATCAATGTGTGAAAATAGGTAAATGA
CCAAAATGGAAACCGATTGAGGAGGGGATGGAGGGCATCAGAGAAAAACT
AAAGAAAAGAGGGCTGCGAGAACACCCGGCAGACTCTGAGTAGCAGAACC
AATGCTACTACATCAGCACTTCAGCTGATCAAAAATAAGATGAATGAACC
GACTTG

Coding sequence (CDS) from alignment at scaffold_1:1165801..1167456-

>mRNA_1654 ID=mRNA_1654|Name=jgi.p|Nanoce1779_2|535926|organism=Nannochloropsis oceanica|type=CDS|length=3321bp|location=Sequence derived from alignment at scaffold_1:1165801..1167456- (Nannochloropsis oceanica)
AGGACGAGGACGAAGATGATAAAGGTGATGAAAATGGAGAGGAGGGAGAG
GATGAGGACGGCGCAGGTGGCAATAGCGCCAGTAGCAGCAGCAGTGAGGA
GCAAGAGCCCGGGAAGAAAGGAGGGCAGCAGAAGGGCAGTAAAAAAATGC
GGATGACGGCTGCCGAGTCGTTCTTCAAGGACCTGTAACTGCTGGAGCTG
GGCGGGGACTCAGAGGTATTTGGTCTAGACATGCACCCTACGCAGGATTT
GATCGCCTTAGGCCTGGTGGATGGCCGGGCTTTGCTGTATTCTTACCAGG
GGAAAGGAGAGACTTGCACGCTGAACACAGACCTGGGGACTCACAAGGAA
GCTTGCCGTGCTGTGCTGTTTGAGCCTACCATGGGTTCCCGTGTCTACAC
CGCATCATCGGACAAAGGCATTCGAACCATCGATATGGCTACGGGCAAGG
TGGCATGGGATGTAACTGACGCGCACGATGAAGCGGTCAATTGCTTGACC
TTCTGGGAGGAAGGGGGGTTGCTGGTGTCGGGGGACGACATAGGAGGGGT
GAAGCTATGGGACTGCCGAGAGGGCCGTAAGAAGGCCGTGGCATCTATTC
AGAAACATGAAGATTTTATCTCAGATCTGCTCGTGCATGAAGGGATGTTG
TTCGGGGCAAGTGGGGATAACACCTTGTCGACCTATGATTTGAAGCACAG
GAAGTTGGTGGCAAGAACGATGGATCAGGAAGATGAGTTGTTGAGTCTCT
CGGTGTTGAAACATGGGAAGAAGATATTAGCGGGGACACAAAGTGGGGTA
CTGCTAGTGTATTCGTGGGGAGAGTGGATGAATTGCACGGATCGGTTCGT
CGGTCATCCTGAGACGGTGGAGGCCTTGGTCAAGGTGGATGAGGAGACGC
TGCTCACCGGGTCGAGTGACGGGTTGATTCGTTTGTGTTCGGTATTGCCA
AATAAATTGTTGGGTGTGCTGGGCTCCCACGACGAATTCCCGGTGGAAAG
GATGAAGATGGCATGGGACCGGCGGGTCCTCGCTTCCATAGCACATGATA
GTTTAGTCCGGTTTTGGGATATGAATGGCGAGCGATGAGGACGAAATGCT
GCCGCAGAGGACGAGGACGAAGATGATAAAGGTGATGAAAATGGAGAGGA
GGGAGAGGATGAGGACGGCGCAGGTGGCAATAGCGCCAGTAGCAGCAGCA
GTGAGGAGCAAGAGCCCGGGAAGAAAGGAGGGCAGCAGAAGGGCAGTAAA
AAAATGCGGATGACGGCTGCCGAGTCGTTCTTCAAGGACCTGTAACTGCT
GGAGCTGGGCGGGGACTCAGAGGTATTTGGTCTAGACATGCACCCTACGC
AGGATTTGATCGCCTTAGGCCTGGTGGATGGCCGGGCTTTGCTGTATTCT
TACCAGGGGAAAGGAGAGACTTGCACGCTGAACACAGACCTGGGGACTCA
CAAGGAAGCTTGCCGTGCTGTGCTGTTTGAGCCTACCATGGGTTCCCGTG
TCTACACCGCATCATCGGACAAAGGCATTCGAACCATCGATATGGCTACG
GGCAAGGTGGCATGGGATGTAACTGACGCGCACGATGAAGCGGTCAATTG
CTTGACCTTCTGGGAGGAAGGGGGGTTGCTGGTGTCGGGGGACGACATAG
GAGGGGTGAAGCTATGGGACTGCCGAGAGGGCCGTAAGAAGGCCGTGGCA
TCTATTCAGAAACATGAAGATTTTATCTCAGATCTGCTCGTGCATGAAGG
GATGTTGTTCGGGGCAAGTGGGGATAACACCTTGTCGACCTATGATTTGA
AGCACAGGAAGTTGGTGGCAAGAACGATGGATCAGGAAGATGAGTTGTTG
AGTCTCTCGGTGTTGAAACATGGGAAGAAGATATTAGCGGGGACACAAAG
TGGGGTACTGCTAGTGTATTCGTGGGGAGAGTGGATGAATTGCACGGATC
GGTTCGTCGGTCATCCTGAGACGGTGGAGGCCTTGGTCAAGGTGGATGAG
GAGACGCTGCTCACCGGGTCGAGTGACGGGTTGATTCGTTTGTGTTCGGT
ATTGCCAAATAAATTGTTGGGTGTGCTGGGCTCCCACGACGAATTCCCGG
TGGAAAGGATGAAGATGGCATGGGACCGGCGGGTCCTCGCTTCCATAGCA
CATGATAGTTTAGTCCGGTTTTGGGATATGAATGGCGAGCGATGAGGACG
AAATGCTGCCGCAGAGGACGAGGACGAAGATGATAAAGGTGATGAAAATG
GAGAGGAGGGAGAGGATGAGGACGGCGCAGGTGGCAATAGCGCCAGTAGC
AGCAGCAGTGAGGAGCAAGAGCCCGGGAAGAAAGGAGGGCAGCAGAAGGG
CAGTAAAAAAATGCGGATGACGGCTGCCGAGTCGTTCTTCAAGGACCTGT
AACTGCTGGAGCTGGGCGGGGACTCAGAGGTATTTGGTCTAGACATGCAC
CCTACGCAGGATTTGATCGCCTTAGGCCTGGTGGATGGCCGGGCTTTGCT
GTATTCTTACCAGGGGAAAGGAGAGACTTGCACGCTGAACACAGACCTGG
GGACTCACAAGGAAGCTTGCCGTGCTGTGCTGTTTGAGCCTACCATGGGT
TCCCGTGTCTACACCGCATCATCGGACAAAGGCATTCGAACCATCGATAT
GGCTACGGGCAAGGTGGCATGGGATGTAACTGACGCGCACGATGAAGCGG
TCAATTGCTTGACCTTCTGGGAGGAAGGGGGGTTGCTGGTGTCGGGGGAC
GACATAGGAGGGGTGAAGCTATGGGACTGCCGAGAGGGCCGTAAGAAGGC
CGTGGCATCTATTCAGAAACATGAAGATTTTATCTCAGATCTGCTCGTGC
ATGAAGGGATGTTGTTCGGGGCAAGTGGGGATAACACCTTGTCGACCTAT
GATTTGAAGCACAGGAAGTTGGTGGCAAGAACGATGGATCAGGAAGATGA
GTTGTTGAGTCTCTCGGTGTTGAAACATGGGAAGAAGATATTAGCGGGGA
CACAAAGTGGGGTACTGCTAGTGTATTCGTGGGGAGAGTGGATGAATTGC
ACGGATCGGTTCGTCGGTCATCCTGAGACGGTGGAGGCCTTGGTCAAGGT
GGATGAGGAGACGCTGCTCACCGGGTCGAGTGACGGGTTGATTCGTTTGT
GTTCGGTATTGCCAAATAAATTGTTGGGTGTGCTGGGCTCCCACGACGAA
TTCCCGGTGGAAAGGATGAAGATGGCATGGGACCGGCGGGTCCTCGCTTC
CATAGCACATGATAGTTTAGTCCGGTTTTGGGATATGAATGGCGAGCGAT
GAGGACGAAATGCTGCCGCAG

Synonyms

Publications