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Properties
Property Name | Value |
TranscriptId | 572791 |
Track | FilteredModels2 |
ProteinId | 572705 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:961541..963676 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1563 ID=mRNA_1563|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp CTTCTCCACTACCACCACAACTCACATTCGCCAGTCCTGCGAAAGCCCCC GCAAGCCCTCGGACACTTCCTTGACTGACATCAAAATTAAAACTTCCCAT ACTACATTGAGAGCCCGTCGGAGAAGTCAGTCCACCCACACTCCCGATGC TCCCACATAAGCCTGTTGCGACATGGACTTTTCTGTCTACTTCAGCCAGC TTTTGCTTCAGCAATAAAGCGCGCTGGCGGGATGCTTCTTGGTCGGGGCT CAGGTCGGTGCTACCTGATTTTTTGTGTTCACTGGAGATCTGACTTAGAG GCGGGAGACGGGAGGAGCAATCCTGCTCCTGTTGTAGGTGCCCTTGTTGA TTCTGAGGGTCGGTATGGCTGTGGCCCCCAGAGGCACTGGTGCTGACGCT ACTACTGCTGTCGGACGAGGTTGAAGGTTGATGTTCCCAGTGATGGAGAG GGGGTGATTGAGAGGCTTCACCATCAGCTTCCCCCGCGCCCTCCGTCCCC CCATCCCCTTTCTCCACCCCCAAACAACTATCATAATCTAAACCCACAGG TGATAGACATGTCGATCGTTGCTGTCTCTCCTTTCCCCCTGCCTCGCGTT CTTTTAATAATCGGTCCAGCTGCTGCAGCTGTTGCTGCTGCAAGGAAGAC GACGACGGCGGCGGTAGTGTGAACGAAGAGGAAGAGGTGGAAGAAGGGGG GGAGGAGGACGAGGAGGATACGTTGCGTGGGGAGGGACTAGGCATTTTTT CTGGGGTGGAATCACAGCTGGAGGTAGAAGAGTGACGACGTACAGCACTG GGGAGACCGCAGCTGGTGGGCGTGGGTTGGATTGGTGTGTGGGTGACAGG GTCCATTGGGCTGCTACAAAAGGAGGTTGGCCTGCTGCTGCTGCTGCTAC TGCTGTTGCTGCCACTGCTGCTGCTCCCTGTGCTGCTGGTGCTGCCTATG GTACTGGTGCTGGCGGCGTTGGTGGAGGTGGGAGTCGGAGGTCGGCCGAG ACTTCTGCTAATACTGTTGCCGTTTTTAAGTGTTTTGCTGCTTGTCTTGC TGGTGCTACTACAGCTGCTATCCAAACTGTTATTGCCTCCGGTGCTGGCG CTGCTGGCGCTGCTGGCGCTGCTGGGGCTGCTGCTCCTGCTTCCACCGGC GCTGTCCAAGGAGTTGCGGTCCGTGTCCTTTCCCTTCCTCCAGGACAGGG TCCTCCGTATCATAGCAGCTGCTGCTACAACTGCTCTTCCTCCTGTACTG TGGGTTAGTCGTTGTGGGGAAAAGGGAAAATGAGGAGGACAAACTTGAGA TGGCCAAAGCTTGGCTGGTAAGATGTTCCTGGAGAAACGGAATTTTAAAT GTGCATGGGTCCTTGGCTTTGCTGCAGGTAGCATGGCTGGGATGTAGGAG GGTGATACATGACGTTAAGGGAAACAATCAGATCTTGCGAGCGGACGTCG CACAAAAATGGCCGCATGAAGTCAAGATATGGCCAAATGATTATGAAAAC GTGTATTTCACATGGATGGCGACGTCGGGTTATGTATTATACGGTCAGGC GGGGGTAGATCTAACGTCGATGATGCCCGCGTCGGGCAAAAATGACGGCT GCACGCAGAGGACATCCCAGCTACCGGTTCTGACTGCGATAAACCGCAGT CGAAGATGTGTCACCTGCAAGGGGGGACAACGCCTCTGTTAGCATGGTTG GCCGGCTCGCAAGTGCTCAAGCTCTCTTGCATCGAAGCAGAAGTTGTTCT CACAGCTCTGTGCGTCTTACACGCCTAAGCAACCACAAAAGCAACTCAGG TACCCAAATATCTTGCTTGAGGGATCACTGCATCTGCCACTCATTTCCAG GCCTCGGTGGTGCTCTGTGTGTGTTGTGATGTTCGAACATAGTCGGATGG GGACAGGAGCGTGTCGACCGAAAAGGTGAAGCCTCGCTATCATGTGAAGG GGGCAGAGTAGCGACACGTAAGCAATGAGATCACATGTATGGGGCCAACA AAGTTGCCCCTCAGCGGTGGTATATATCCTTGGTCGAACAAGGAAAAGAT AACGACAAGAAGGGCTATAGATCTTGTTATGAGGCATTACCTGCTGTCTG CTTGCTGTCCCAGACAGGACCTGTCGATGAGTGACC back to topprotein sequence of jgi.p|Nanoce1779_2|572705 >mRNA_1563-protein ID=mRNA_1563-protein|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp MAKAWLVRCSWRNGILNVHGSLALLQVAWLGCRRVIHDVKGNNQILRADV AQKWPHEVKIWPNDYENVYFTWMATSGYVLYGQAGVDLTSMMPASGKNDG CTQRTSQLPVLTAINRSRRCVTCKGGQRLC* back to topmRNA from alignment at scaffold_1:961541..963676- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1563 ID=mRNA_1563|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp|location=Sequence derived from alignment at scaffold_1:961541..963676- (Nannochloropsis oceanica) CTTCTCCACTACCACCACAACTCACATTCGCCAGTCCTGCGAAAGCCCCC
GCAAGCCCTCGGACACTTCCTTGACTGACATCAAAATTAAAACTTCCCAT
ACTACATTGAGAGCCCGTCGGAGAAGTCAGTCCACCCACACTCCCGATGC
TCCCACATAAGCCTGTTGCGACATGGACTTTTCTGTCTACTTCAGCCAGC
TTTTGCTTCAGCAATAAAGCGCGCTGGCGGGATGCTTCTTGGTCGGGGCT
CAGGTCGGTGCTACCTGATTTTTTGTGTTCACTGGAGATCTGACTTAGAG
GCGGGAGACGGGAGGAGCAATCCTGCTCCTGTTGTAGGTGCCCTTGTTGA
TTCTGAGGGTCGGTATGGCTGTGGCCCCCAGAGGCACTGGTGCTGACGCT
ACTACTGCTGTCGGACGAGGTTGAAGGTTGATGTTCCCAGTGATGGAGAG
GGGGTGATTGAGAGGCTTCACCATCAGCTTCCCCCGCGCCCTCCGTCCCC
CCATCCCCTTTCTCCACCCCCAAACAACTATCATAATCTAAACCCACAGG
TGATAGACATGTCGATCGTTGCTGTCTCTCCTTTCCCCCTGCCTCGCGTT
CTTTTAATAATCGGTCCAGCTGCTGCAGCTGTTGCTGCTGCAAGGAAGAC
GACGACGGCGGCGGTAGTGTGAACGAAGAGGAAGAGGTGGAAGAAGGGGG
GGAGGAGGACGAGGAGGATACGTTGCGTGGGGAGGGACTAGGCATTTTTT
CTGGGGTGGAATCACAGCTGGAGGTAGAAGAGTGACGACGTACAGCACTG
GGGAGACCGCAGCTGGTGGGCGTGGGTTGGATTGGTGTGTGGGTGACAGG
GTCCATTGGGCTGCTACAAAAGGAGGTTGGCCTGCTGCTGCTGCTGCTAC
TGCTGTTGCTGCCACTGCTGCTGCTCCCTGTGCTGCTGGTGCTGCCTATG
GTACTGGTGCTGGCGGCGTTGGTGGAGGTGGGAGTCGGAGGTCGGCCGAG
ACTTCTGCTAATACTGTTGCCGTTTTTAAGTGTTTTGCTGCTTGTCTTGC
TGGTGCTACTACAGCTGCTATCCAAACTGTTATTGCCTCCGGTGCTGGCG
CTGCTGGCGCTGCTGGCGCTGCTGGGGCTGCTGCTCCTGCTTCCACCGGC
GCTGTCCAAGGAGTTGCGGTCCGTGTCCTTTCCCTTCCTCCAGGACAGGG
TCCTCCGTATCATAGCAGCTGCTGCTACAACTGCTCTTCCTCCTGTACTG
TGGGTTAGTCGTTGTGGGGAAAAGGGAAAATGAGGAGGACAAACTTGAGA
TGGCCAAAGCTTGGCTGGTAAGATGTTCCTGGAGAAACGGAATTTTAAAT
GTGCATGGGTCCTTGGCTTTGCTGCAGGTAGCATGGCTGGGATGTAGGAG
GGTGATACATGACGTTAAGGGAAACAATCAGATCTTGCGAGCGGACGTCG
CACAAAAATGGCCGCATGAAGTCAAGATATGGCCAAATGATTATGAAAAC
GTGTATTTCACATGGATGGCGACGTCGGGTTATGTATTATACGGTCAGGC
GGGGGTAGATCTAACGTCGATGATGCCCGCGTCGGGCAAAAATGACGGCT
GCACGCAGAGGACATCCCAGCTACCGGTTCTGACTGCGATAAACCGCAGT
CGAAGATGTGTCACCTGCAAGGGGGGACAACGCCTCTGTTAGCATGGTTG
GCCGGCTCGCAAGTGCTCAAGCTCTCTTGCATCGAAGCAGAAGTTGTTCT
CACAGCTCTGTGCGTCTTACACGCCTAAGCAACCACAAAAGCAACTCAGG
TACCCAAATATCTTGCTTGAGGGATCACTGCATCTGCCACTCATTTCCAG
GCCTCGGTGGTGCTCTGTGTGTGTTGTGATGTTCGAACATAGTCGGATGG
GGACAGGAGCGTGTCGACCGAAAAGGTGAAGCCTCGCTATCATGTGAAGG
GGGCAGAGTAGCGACACGTAAGCAATGAGATCACATGTATGGGGCCAACA
AAGTTGCCCCTCAGCGGTGGTATATATCCTTGGTCGAACAAGGAAAAGAT
AACGACAAGAAGGGCTATAGATCTTGTTATGAGGCATTACCTGCTGTCTG
CTTGCTGTCCCAGACAGGACCTGTCGATGAGTGACC back to topCoding sequence (CDS) from alignment at scaffold_1:961541..963676- >mRNA_1563 ID=mRNA_1563|Name=jgi.p|Nanoce1779_2|572705|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_1:961541..963676- (Nannochloropsis oceanica) ATGGCCAAAGCTTGGCTGGTAAGATGTTCCTGGAGAAACGGAATTTTAAA TGTGCATGGGTCCTTGGCTTTGCTGCAGGTAGCATGGCTGGGATGTAGGA GGGTGATACATGACGTTAAGGGAAACAATCAGATCTTGCGAGCGGACGTC GCACAAAAATGGCCGCATGAAGTCAAGATATGGCCAAATGATTATGAAAA CGTGTATTTCACATGGATGGCGACGTCGGGTTATGTATTATACGGTCAGG CGGGGGTAGATCTAACGTCGATGATGCCCGCGTCGGGCAAAAATGACGGC TGCACGCAGAGGACATCCCAGCTACCGGTTCTGACTGCGATAAACCGCAG TCGAAGATGTGTCACCTGCAAGGGGGGACAACGCCTCTGTTAG back to top
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