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Properties
| Property Name | Value |
|---|
| TranscriptId | 555681 |
| Track | FilteredModels2 |
| ProteinId | 555595 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:472038..474016 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5745 ID=mRNA_5745|Name=jgi.p|Nanoce1779_2|555595|organism=Nannochloropsis oceanica|type=mRNA|length=1447bp
AGGCAATCGAGCAATTGGCACAAGCAAAATCATGGGTGACTGGGATCTTC
GTATCGTATGTATGGGCGCCGGCTATGTGGGCGGACCCACCATGGCAGTA
ATAGCCAAGAACTGTCCTCGCATCTGCGTGACGGTGGTGGACATCTCCGG
GCCCCAGATTGCTGCCTGGAACTCGGCCGATCTCCCCATCTATGAGCCAG
GCCTGCAGGAGGTGGTGGAGGAGACCCGTGGAAAAAATCTCTTTTTCTCC
AATGACATTGACGGGGCGATCGCTGCGGCAGACATCATCTTTGTTTCGGT
CAATACGCCCACCAAGCTCACGGGTATCGGTGCCGGGCGTGCGGCCAATG
TGAAGAATTGTGAGCTCTGTGCGCGTAAAATTGCCGAAATTTCTACCTCC
GCTAAAATCGTGGTTGAGAAGTCCACGGTGCCCGTGCGTACAGCCGATGC
CGTGCGCCGGGTCCTGGCGACAAATGATAAGGGCATTAAGTTCCAGGTGC
TGTCGAATCCGGAGTTTTTGGCGGAGGGGACCGCAATCGACGATTTGATG
GCGCCTGGTCGAGTATTGATTGGGGGAGAACAGACCCCGGATGGACTTGC
GGCGATCGAGAAGCTGGTATCTGTTTATGCGCATTGGGTGCCCCGCGAGC
GGATTCTGACGACGAATCTGTGGTCATCCGAGTTGTCGAAGCTGGTGGCG
AACGCTTTTTTGGCGCAGCGTGTCAGCTCAATCAATTCTATCTCGGCGTT
GTGTGAGGCGACCGATGCGGACGTCTCCGAGGTCTCGCGGGCCATAGGCT
CTGACCCGCGGATTGGCCCCAAGTTCTTGCAGGCTTCTGTGGGGTTTGGG
GGATCCTGCTTCCAAAAAGATATTTTGAATTTGGTGTATTTGTGCGAGAG
CTTTGGGTTAGAGGAAGTTGCAGAGTATTGGAATCAGGTAATCAAAATGA
ATGACTATCAGAAATCCCGCTTCTCCTCCCTCATCGTCTCGCGGATGTTC
AACACCGTCACCGGCAAGAAGATTGCCATCTTCGGTTTCGCTTTCAAGAA
GGACACAGGTGATACCCGCGAGACTGCTTCTGTCTTTGTGTGCCGTAACC
TGTTGGAGGAACGTGCGCAACTGCACGTCTTTGACCCCAAGGTGACAAGA
GTGCAGATGATGCTCGAGTTCGAGTACAGCACCAATACGACCGAGGCGAC
AGTACCGGGGTTCAAGGACCTGGTGGTGACGAGCCCCTGCCCGTATGAGG
CCGCGAAAGGCGCCCATGCGATTGCGGTGTTGACTGAGTGGGATGAATTC
AAGGAGTACGATTATCAGCGGATTTACGATAGCATGGCCAAGCCGGCTTT
CATTTTTGATGGTCGAAACATCTTGGACCAGAAAATGCTAAGATCGATTG
GTTTTGAGAATTACGCGATTGGCAAGCCGAGGTCGAAGGAGTGGTAG back to topprotein sequence of jgi.p|Nanoce1779_2|555595 >mRNA_5745-protein ID=mRNA_5745-protein|Name=jgi.p|Nanoce1779_2|555595|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MGDWDLRIVCMGAGYVGGPTMAVIAKNCPRICVTVVDISGPQIAAWNSAD
LPIYEPGLQEVVEETRGKNLFFSNDIDGAIAAADIIFVSVNTPTKLTGIG
AGRAANVKNCELCARKIAEISTSAKIVVEKSTVPVRTADAVRRVLATNDK
GIKFQVLSNPEFLAEGTAIDDLMAPGRVLIGGEQTPDGLAAIEKLVSVYA
HWVPRERILTTNLWSSELSKLVANAFLAQRVSSINSISALCEATDADVSE
VSRAIGSDPRIGPKFLQASVGFGGSCFQKDILNLVYLCESFGLEEVAEYW
NQVIKMNDYQKSRFSSLIVSRMFNTVTGKKIAIFGFAFKKDTGDTRETAS
VFVCRNLLEERAQLHVFDPKVTRVQMMLEFEYSTNTTEATVPGFKDLVVT
SPCPYEAAKGAHAIAVLTEWDEFKEYDYQRIYDSMAKPAFIFDGRNILDQ
KMLRSIGFENYAIGKPRSKEW* back to topmRNA from alignment at scaffold_11:472038..474016+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5745 ID=mRNA_5745|Name=jgi.p|Nanoce1779_2|555595|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp|location=Sequence derived from alignment at scaffold_11:472038..474016+ (Nannochloropsis oceanica)
AGGCAATCGAGCAATTGGCACAAGCAAAATCATGGGTGACTGGGATCTTC
GTATCGTATGTATGGGCGCCGGTAAGTCCCGGTAGTGGTTGGCACGGACG
GATTGTATGGGCGTGGCCACTCCTCTTTGCTTTCCCCTCCTGTTTCCACA
CGGAAAGCCCTATACTTACCTGAAATGCACCCTTTACCTTCAGGCTATGT
GGGCGGACCCACCATGGCAGTAATAGCCAAGAACTGTCCTCGCATCTGCG
TGACGGTGGTGGACATCTCCGGGCCCCAGATTGCTGCCTGGAACTCGGCC
GATCTCCCCATCTATGAGCCAGGCCTGCAGGAGGTGGTGGAGGAGACCCG
TGGAAAAAATCTCTTTTTCTCCAATGACATTGACGGGGCGATCGCTGCGG
CAGACATCATCTTTGTTTCGGTCAATACGCCCACCAAGCTCACGGTACGT
GCGGGTGGGATGTAGTGTGTAGTGTGTTAAAAGGCAGCATAAATTCTATG
CATAGTGCATGCGGACCCGTTTTAGTTGTTAACCTTTGACCAGATTTACG
CTCATGCTTTCATGTGATCACCATATTGGTGCATTCTTCCAGAAGATATA
ATGAGCACAGCTACCCTCCACATCATTTCTCATTCCTACCCATGTCAAAA
CTCACTCCCCTCTCTACCCCCCCCACTCTGCTCACCACCACAGGGTATCG
GTGCCGGGCGTGCGGCCAATGTGAAGAATTGTGAGCTCTGTGCGCGTAAA
ATTGCCGAAATTTCTACCTCCGCTAAAATCGTGGTTGAGAAGTCCACGGT
GCCCGTGCGTACAGCCGATGCCGTGCGCCGGGTCCTGGCGACAAATGATA
AGGGCATTAAGTTCCAGGTGCTGTCGAATCCGGAGTTTTTGGCGGAGGGG
ACCGCAATCGACGATTTGATGGCGCCTGGTCGAGTATTGATTGGGGGAGA
ACAGACCCCGGATGGACTTGCGGCGATCGAGAAGCTGGTATCTGTTTATG
CGCATTGGGTGCCCCGCGAGCGGATTCTGACGACGAATCTGTGGTCATCC
GAGTTGTCGAAGCTGGTGGCGAACGCTTTTTTGGCGCAGCGTGTCAGCTC
AATCAATTCTATCTCGGCGTTGTGTGAGGCGACCGATGCGGACGTCTCCG
AGGTCTCGCGGGCCATAGGCTCTGACCCGCGGATTGGCCCCAAGTTCTTG
CAGGCTTCTGTGGGGTTTGGGGGATCCTGCTTCCAAAAAGATATTTTGAA
TTTGGTGTATTTGTGCGAGAGCTTTGGGTTAGAGGAAGTTGCAGAGTATT
GGAATCAGGTATGGAGGGAGAGACGGTGGCTTTAAGGAGTGAGTGGCAAA
GGGGGAAAAATGGCGGAGATGATTTGTCCTGTGATGAGTGATAGATAGAT
GTATTTAAGCAGACATTGATGCCCCCTCTTCTTACCTCTCTTCCTCCTAC
CTTCCATAATCATCTCCAGGTAATCAAAATGAATGACTATCAGAAATCCC
GCTTCTCCTCCCTCATCGTCTCGCGGATGTTCAACACCGTCACCGGCAAG
AAGATTGCCATCTTCGGTTTCGCTTTCAAGAAGGACACAGGTGATACCCG
CGAGACTGCTTCTGTCTTTGTGTGCCGTAACCTGTTGGAGGAACGTGCGC
AACTGCACGTCTTTGACCCCAAGGTGACAAGAGTGCAGATGATGCTCGAG
TTCGAGTACAGCACCAATACGACCGAGGCGACAGTACCGGGGTTCAAGGA
CCTGGTGGTGACGAGCCCCTGCCCGTATGAGGCCGCGAAAGGCGCCCATG
CGATTGCGGTGTTGACTGAGTGGGATGAATTCAAGGAGTACGATTATCAG
CGGATTTACGATAGCATGGCCAAGCCGGCTTTCATTTTTGATGGTCGAAA
CATCTTGGACCAGAAAATGCTAAGATCGATTGGTTTTGAGAATTACGCGA
TTGGCAAGCCGAGGTCGAAGGAGTGGTAG back to topCoding sequence (CDS) from alignment at scaffold_11:472038..474016+ >mRNA_5745 ID=mRNA_5745|Name=jgi.p|Nanoce1779_2|555595|organism=Nannochloropsis oceanica|type=CDS|length=5664bp|location=Sequence derived from alignment at scaffold_11:472038..474016+ (Nannochloropsis oceanica)
ATGGGTGACTGGGATCTTCGTATCGTATGTATGGGCGCCGGCTATGTGGG
CGGACCCACCATGGCAGTAATAGCCAAGAACTGTCCTCGCATCTGCGTGA
CGGTGGTGGACATCTCCGGGCCCCAGATTGCTGCCTGGAACTCGGCCGAT
CTCCCCATCTATGAGCCAGGCCTGCAGGAGGTGGTGGAGGAGACCCGTGG
AAAAAATCTCTTTTTCTCCAATGACATTGACGGGGCGATCGCTGCGGCAG
ACATCATCTTTGTTTCGGTCAATACGCCCACCAAGCTCACGGGTATCGGT
GCCGGGCGTGCGGCCAATGTGAAGAATTGTGAGCTCTGTGCGCGTAAAAT
TGCCGAAATTTCTACCTCCGCTAAAATCGTGGTTGAGAAGTCCACGGTGC
CCGTGCGTACAGCCGATGCCGTGCGCCGGGTCCTGGCGACAAATGATAAG
GGCATTAAGTTCCAGGTGCTGTCGAATCCGGAGTTTTTGGCGGAGGGGAC
CGCAATCGACGATTTGATGGCGCCTGGTCGAGTATTGATTGGGGGAGAAC
AGACCCCGGATGGACTTGCGGCGATCGAGAAGCTGGTATCTGTTTATGCG
CATTGGGTGCCCCGCGAGCGGATTCTGACGACGAATCTGTGGTCATCCGA
GTTGTCGAAGCTGGTGGCGAACGCTTTTTTGGCGCAGCGTGTCAGCTCAA
TCAATTCTATCTCGGCGTTGTGTGAGGCGACCGATGCGGACGTCTCCGAG
GTCTCGCGGGCCATAGGCTCTGACCCGCGGATTGGCCCCAAGTTCTTGCA
GGCTTCTGTGGGGTTTGGGGGATCCTGCTTCCAAAAAGATATTTTGAATT
TGGTGTATTTGTGCGAGAGCTTTGGGTTAGAGGAAGTTGCAGAGTATTGG
AATCAGGTAATCAAAATGAATGACTATCAGAAATCCCGCTTCTCCTCCCT
CATCGTCTCGCGGATGTTCAACACCGTCACCGGCAAGAAGATTGCCATCT
TCGGTTTCGCTTTCAAGAAGGACACAGGTGATACCCGCGAGACTGCTTCT
GTCTTTGTGTGCCGTAACCTGTTGGAGGAACGTGCGCAACTGCACGTCTT
TGACCCCAAGGTGACAAGAGTGCAGATGATGCTCGAGTTCGAGTACAGCA
CCAATACGACCGAGGCGACAGTACCGGGGTTCAAGGACCTGGTGGTGACG
AGCCCCTGCCCGTATGAGGCCGCGAAAGGCGCCCATGCGATTGCGGTGTT
GACTGAGTGGGATGAATTCAAGGAGTACGATTATCAGCGGATTTACGATA
GCATGGCCAAGCCGGCTTTCATTTTTGATGGTCGAAACATCTTGGACCAG
AAAATGCTAAGATCGATTGGTTTTGAGAATTACGCGATTGGCAAGCCGAG
GTCGAAGGAGTGGTAGATGGGTGACTGGGATCTTCGTATCGTATGTATGG
GCGCCGGCTATGTGGGCGGACCCACCATGGCAGTAATAGCCAAGAACTGT
CCTCGCATCTGCGTGACGGTGGTGGACATCTCCGGGCCCCAGATTGCTGC
CTGGAACTCGGCCGATCTCCCCATCTATGAGCCAGGCCTGCAGGAGGTGG
TGGAGGAGACCCGTGGAAAAAATCTCTTTTTCTCCAATGACATTGACGGG
GCGATCGCTGCGGCAGACATCATCTTTGTTTCGGTCAATACGCCCACCAA
GCTCACGGGTATCGGTGCCGGGCGTGCGGCCAATGTGAAGAATTGTGAGC
TCTGTGCGCGTAAAATTGCCGAAATTTCTACCTCCGCTAAAATCGTGGTT
GAGAAGTCCACGGTGCCCGTGCGTACAGCCGATGCCGTGCGCCGGGTCCT
GGCGACAAATGATAAGGGCATTAAGTTCCAGGTGCTGTCGAATCCGGAGT
TTTTGGCGGAGGGGACCGCAATCGACGATTTGATGGCGCCTGGTCGAGTA
TTGATTGGGGGAGAACAGACCCCGGATGGACTTGCGGCGATCGAGAAGCT
GGTATCTGTTTATGCGCATTGGGTGCCCCGCGAGCGGATTCTGACGACGA
ATCTGTGGTCATCCGAGTTGTCGAAGCTGGTGGCGAACGCTTTTTTGGCG
CAGCGTGTCAGCTCAATCAATTCTATCTCGGCGTTGTGTGAGGCGACCGA
TGCGGACGTCTCCGAGGTCTCGCGGGCCATAGGCTCTGACCCGCGGATTG
GCCCCAAGTTCTTGCAGGCTTCTGTGGGGTTTGGGGGATCCTGCTTCCAA
AAAGATATTTTGAATTTGGTGTATTTGTGCGAGAGCTTTGGGTTAGAGGA
AGTTGCAGAGTATTGGAATCAGGTAATCAAAATGAATGACTATCAGAAAT
CCCGCTTCTCCTCCCTCATCGTCTCGCGGATGTTCAACACCGTCACCGGC
AAGAAGATTGCCATCTTCGGTTTCGCTTTCAAGAAGGACACAGGTGATAC
CCGCGAGACTGCTTCTGTCTTTGTGTGCCGTAACCTGTTGGAGGAACGTG
CGCAACTGCACGTCTTTGACCCCAAGGTGACAAGAGTGCAGATGATGCTC
GAGTTCGAGTACAGCACCAATACGACCGAGGCGACAGTACCGGGGTTCAA
GGACCTGGTGGTGACGAGCCCCTGCCCGTATGAGGCCGCGAAAGGCGCCC
ATGCGATTGCGGTGTTGACTGAGTGGGATGAATTCAAGGAGTACGATTAT
CAGCGGATTTACGATAGCATGGCCAAGCCGGCTTTCATTTTTGATGGTCG
AAACATCTTGGACCAGAAAATGCTAAGATCGATTGGTTTTGAGAATTACG
CGATTGGCAAGCCGAGGTCGAAGGAGTGGTAGATGGGTGACTGGGATCTT
CGTATCGTATGTATGGGCGCCGGCTATGTGGGCGGACCCACCATGGCAGT
AATAGCCAAGAACTGTCCTCGCATCTGCGTGACGGTGGTGGACATCTCCG
GGCCCCAGATTGCTGCCTGGAACTCGGCCGATCTCCCCATCTATGAGCCA
GGCCTGCAGGAGGTGGTGGAGGAGACCCGTGGAAAAAATCTCTTTTTCTC
CAATGACATTGACGGGGCGATCGCTGCGGCAGACATCATCTTTGTTTCGG
TCAATACGCCCACCAAGCTCACGGGTATCGGTGCCGGGCGTGCGGCCAAT
GTGAAGAATTGTGAGCTCTGTGCGCGTAAAATTGCCGAAATTTCTACCTC
CGCTAAAATCGTGGTTGAGAAGTCCACGGTGCCCGTGCGTACAGCCGATG
CCGTGCGCCGGGTCCTGGCGACAAATGATAAGGGCATTAAGTTCCAGGTG
CTGTCGAATCCGGAGTTTTTGGCGGAGGGGACCGCAATCGACGATTTGAT
GGCGCCTGGTCGAGTATTGATTGGGGGAGAACAGACCCCGGATGGACTTG
CGGCGATCGAGAAGCTGGTATCTGTTTATGCGCATTGGGTGCCCCGCGAG
CGGATTCTGACGACGAATCTGTGGTCATCCGAGTTGTCGAAGCTGGTGGC
GAACGCTTTTTTGGCGCAGCGTGTCAGCTCAATCAATTCTATCTCGGCGT
TGTGTGAGGCGACCGATGCGGACGTCTCCGAGGTCTCGCGGGCCATAGGC
TCTGACCCGCGGATTGGCCCCAAGTTCTTGCAGGCTTCTGTGGGGTTTGG
GGGATCCTGCTTCCAAAAAGATATTTTGAATTTGGTGTATTTGTGCGAGA
GCTTTGGGTTAGAGGAAGTTGCAGAGTATTGGAATCAGGTAATCAAAATG
AATGACTATCAGAAATCCCGCTTCTCCTCCCTCATCGTCTCGCGGATGTT
CAACACCGTCACCGGCAAGAAGATTGCCATCTTCGGTTTCGCTTTCAAGA
AGGACACAGGTGATACCCGCGAGACTGCTTCTGTCTTTGTGTGCCGTAAC
CTGTTGGAGGAACGTGCGCAACTGCACGTCTTTGACCCCAAGGTGACAAG
AGTGCAGATGATGCTCGAGTTCGAGTACAGCACCAATACGACCGAGGCGA
CAGTACCGGGGTTCAAGGACCTGGTGGTGACGAGCCCCTGCCCGTATGAG
GCCGCGAAAGGCGCCCATGCGATTGCGGTGTTGACTGAGTGGGATGAATT
CAAGGAGTACGATTATCAGCGGATTTACGATAGCATGGCCAAGCCGGCTT
TCATTTTTGATGGTCGAAACATCTTGGACCAGAAAATGCTAAGATCGATT
GGTTTTGAGAATTACGCGATTGGCAAGCCGAGGTCGAAGGAGTGGTAGAT
GGGTGACTGGGATCTTCGTATCGTATGTATGGGCGCCGGCTATGTGGGCG
GACCCACCATGGCAGTAATAGCCAAGAACTGTCCTCGCATCTGCGTGACG
GTGGTGGACATCTCCGGGCCCCAGATTGCTGCCTGGAACTCGGCCGATCT
CCCCATCTATGAGCCAGGCCTGCAGGAGGTGGTGGAGGAGACCCGTGGAA
AAAATCTCTTTTTCTCCAATGACATTGACGGGGCGATCGCTGCGGCAGAC
ATCATCTTTGTTTCGGTCAATACGCCCACCAAGCTCACGGGTATCGGTGC
CGGGCGTGCGGCCAATGTGAAGAATTGTGAGCTCTGTGCGCGTAAAATTG
CCGAAATTTCTACCTCCGCTAAAATCGTGGTTGAGAAGTCCACGGTGCCC
GTGCGTACAGCCGATGCCGTGCGCCGGGTCCTGGCGACAAATGATAAGGG
CATTAAGTTCCAGGTGCTGTCGAATCCGGAGTTTTTGGCGGAGGGGACCG
CAATCGACGATTTGATGGCGCCTGGTCGAGTATTGATTGGGGGAGAACAG
ACCCCGGATGGACTTGCGGCGATCGAGAAGCTGGTATCTGTTTATGCGCA
TTGGGTGCCCCGCGAGCGGATTCTGACGACGAATCTGTGGTCATCCGAGT
TGTCGAAGCTGGTGGCGAACGCTTTTTTGGCGCAGCGTGTCAGCTCAATC
AATTCTATCTCGGCGTTGTGTGAGGCGACCGATGCGGACGTCTCCGAGGT
CTCGCGGGCCATAGGCTCTGACCCGCGGATTGGCCCCAAGTTCTTGCAGG
CTTCTGTGGGGTTTGGGGGATCCTGCTTCCAAAAAGATATTTTGAATTTG
GTGTATTTGTGCGAGAGCTTTGGGTTAGAGGAAGTTGCAGAGTATTGGAA
TCAGGTAATCAAAATGAATGACTATCAGAAATCCCGCTTCTCCTCCCTCA
TCGTCTCGCGGATGTTCAACACCGTCACCGGCAAGAAGATTGCCATCTTC
GGTTTCGCTTTCAAGAAGGACACAGGTGATACCCGCGAGACTGCTTCTGT
CTTTGTGTGCCGTAACCTGTTGGAGGAACGTGCGCAACTGCACGTCTTTG
ACCCCAAGGTGACAAGAGTGCAGATGATGCTCGAGTTCGAGTACAGCACC
AATACGACCGAGGCGACAGTACCGGGGTTCAAGGACCTGGTGGTGACGAG
CCCCTGCCCGTATGAGGCCGCGAAAGGCGCCCATGCGATTGCGGTGTTGA
CTGAGTGGGATGAATTCAAGGAGTACGATTATCAGCGGATTTACGATAGC
ATGGCCAAGCCGGCTTTCATTTTTGATGGTCGAAACATCTTGGACCAGAA
AATGCTAAGATCGATTGGTTTTGAGAATTACGCGATTGGCAAGCCGAGGT
CGAAGGAGTGGTAG back to top
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