jgi.p|Nanoce1779_2|589991, mRNA_5687 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589991
Unique NamemRNA_5687
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1455
Alignment locationscaffold_11:324990..326548 +

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Properties
Property NameValue
TranscriptId590077
TrackFilteredModels2
ProteinId589991
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:324990..326548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589991gene_5687Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589991mRNA_5687-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5687CDS_5687Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5687 ID=mRNA_5687|Name=jgi.p|Nanoce1779_2|589991|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
ACAGACGATAGCACAAGACAATTATGCTGCAGGTGGCAATGGTGGTGCTG
AGAAGGCGGCTTGTTCTTGCAGCGTCGCCCAGTGTGTCCGCTGGAGCAGC
GGCGGCAGTTGGAGGATCAAGAAGGCTAGGCCTTGCCTCCCTGGCAAACC
TCACCACTCAGCGGCAGCAGCATCTACAGAAACATCGGCAGCAACAGTCG
AACAATAGCTTAGTATGGACGCGGGCGTTTCATGCGTCAACATCCAGTCG
CATGATGGCAGAGGTGGTCATGACGGTTCCCAGCATGGGTGACTCGATTA
CGGAGGGTACCATCAAGTCGTGGGAGAAGAATGTTGGGGACGTGGTTGCA
CTGGACGATGTTGTGGTGGTCATAGAGACAGACAAGGTCTCTGTTGACAT
TCGAGCGAAAGACAAGGGCATTCTCGTCGAGCAATTCGCAGCCGTGGACG
ATAATGTTGATGTCGGTGCCAATCTCCTCAAGATTGATACAAGTGCCACT
GCCTCCGCCTCCGCTCCTTCAGCTGCCCAGAAATTAGTCCCCTCTGATGC
TGCTCCTGATGCTGCTCCTGCCTCTGTTCCTGCTCCTGCCTCTGCTCCTG
CCTCTGATCCTGCTCCTACAACCGCATCAGAAGTGCAACGAAAGCCTCTC
ATCAAATTTTTGGGGAAGCGGTCCTTGATTGGCAAGGACATTCCTGCTGC
TGCGTCTGCTGCCCAAATGGCAAGGACAGGAGCAGCAGCAACAGGGCCCG
CGCCTGGAAGGTATGAAGACCTTAAAAGCACACCGGGTTCCAAAACGTTT
GATGAGATGCCAGCCATGTTTGGAAGGCCTTCGTTGAGCGAAAAGGAGAT
TGAGGCGATCGAGAGCGGGGGGGCGACGCTTTGATAGTAAGGAGGGAGGG
CGGGCGGAGGAGGCGGAGTTTTTGTAGAAAGGCGGCGATGCGGAGAGGAG
GAAAGGGGGAGGGAACAGGAGACAAAAGTATAGGAGGAGCACATCATTGG
ATGACGCAACTTCTCTTTATACATACAGTACAACTATTTTTTTCCCTTAT
ATTTACTTGTCATTTGTTTTCTTCCAGTGCTGATGGCGCTGGTGGTCGAG
GTGCTCCTGATTCCTTCTCCTCCTGGCTTCCTACCTCGTTTCCCCCACCA
ACTCTATCTCTATCTCCATCTAGCCCTCCCTCTTCGCCCATCCCCTCCTT
TTCCACAGCAGTAACAAGAACATTATCGACTACGGCAGGAGGAGGAGGAG
AAATGACGTCCGCATCACCACGCATCGTTTCTGTCACGCCTTCCTTCCCT
TGCTCCCTCGTCCCCTCCGGCTTCGTCCACGTCACCTCCCCCGTTTTGAC
ATGCATATAGTAATACGCACCATACCTTGGATCGAACACCGCCTTCCACT
CCTCGCTTCCCTCACATTCTCCCGCCCTTCCTTCATACTGCCCATCCGTA
TCAGG
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protein sequence of jgi.p|Nanoce1779_2|589991

>mRNA_5687-protein ID=mRNA_5687-protein|Name=jgi.p|Nanoce1779_2|589991|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MLQVAMVVLRRRLVLAASPSVSAGAAAAVGGSRRLGLASLANLTTQRQQH
LQKHRQQQSNNSLVWTRAFHASTSSRMMAEVVMTVPSMGDSITEGTIKSW
EKNVGDVVALDDVVVVIETDKVSVDIRAKDKGILVEQFAAVDDNVDVGAN
LLKIDTSATASASAPSAAQKLVPSDAAPDAAPASVPAPASAPASDPAPTT
ASEVQRKPLIKFLGKRSLIGKDIPAAASAAQMARTGAAATGPAPGRYEDL
KSTPGSKTFDEMPAMFGRPSLSEKEIEAIESGGATL*
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mRNA from alignment at scaffold_11:324990..326548+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5687 ID=mRNA_5687|Name=jgi.p|Nanoce1779_2|589991|organism=Nannochloropsis oceanica|type=mRNA|length=1559bp|location=Sequence derived from alignment at scaffold_11:324990..326548+ (Nannochloropsis oceanica)
ACAGACGATAGCACAAGACAATTATGCTGCAGGTGGCAATGGTGGTGCTG
AGAAGGCGGCTTGTTCTTGCAGCGTCGCCCAGTGTGTCCGCTGGAGCAGC
GGCGGCAGTTGGAGGATCAAGAAGGCTAGGCCTTGCCTCCCTGGCAAACC
TCACCACTCAGCGGCAGCAGCATCTACAGAAACATCGGCAGCAACAGTCG
AACAATAGCTTAGTATGGACGCGGGCGTTTCATGCGTCAACATCCAGTCG
CATGATGGCAGAGGTGGTCATGACGGTTCCCAGGTATGTGGGTCAAGCAG
AGAAGGAAGAGATGCGAATCGTCTAGACAAGGCAAGACGACATTCTCATT
CATTCATTTCCATTTCACTTCCACAACAAAATCGTAGCATGGGTGACTCG
ATTACGGAGGGTACCATCAAGTCGTGGGAGAAGAATGTTGGGGACGTGGT
TGCACTGGACGATGTTGTGGTGGTCATAGAGACAGACAAGGTCTCTGTTG
ACATTCGAGCGAAAGACAAGGGCATTCTCGTCGAGCAATTCGCAGCCGTG
GACGATAATGTTGATGTCGGTGCCAATCTCCTCAAGATTGATACAAGTGC
CACTGCCTCCGCCTCCGCTCCTTCAGCTGCCCAGAAATTAGTCCCCTCTG
ATGCTGCTCCTGATGCTGCTCCTGCCTCTGTTCCTGCTCCTGCCTCTGCT
CCTGCCTCTGATCCTGCTCCTACAACCGCATCAGAAGTGCAACGAAAGCC
TCTCATCAAATTTTTGGGGAAGCGGTCCTTGATTGGCAAGGACATTCCTG
CTGCTGCGTCTGCTGCCCAAATGGCAAGGACAGGAGCAGCAGCAACAGGG
CCCGCGCCTGGAAGGTATGAAGACCTTAAAAGCACACCGGGTTCCAAAAC
GTTTGATGAGATGCCAGCCATGTTTGGAAGGCCTTCGTTGAGCGAAAAGG
AGATTGAGGCGATCGAGAGCGGGGGGGCGACGCTTTGATAGTAAGGAGGG
AGGGCGGGCGGAGGAGGCGGAGTTTTTGTAGAAAGGCGGCGATGCGGAGA
GGAGGAAAGGGGGAGGGAACAGGAGACAAAAGTATAGGAGGAGCACATCA
TTGGATGACGCAACTTCTCTTTATACATACAGTACAACTATTTTTTTCCC
TTATATTTACTTGTCATTTGTTTTCTTCCAGTGCTGATGGCGCTGGTGGT
CGAGGTGCTCCTGATTCCTTCTCCTCCTGGCTTCCTACCTCGTTTCCCCC
ACCAACTCTATCTCTATCTCCATCTAGCCCTCCCTCTTCGCCCATCCCCT
CCTTTTCCACAGCAGTAACAAGAACATTATCGACTACGGCAGGAGGAGGA
GGAGAAATGACGTCCGCATCACCACGCATCGTTTCTGTCACGCCTTCCTT
CCCTTGCTCCCTCGTCCCCTCCGGCTTCGTCCACGTCACCTCCCCCGTTT
TGACATGCATATAGTAATACGCACCATACCTTGGATCGAACACCGCCTTC
CACTCCTCGCTTCCCTCACATTCTCCCGCCCTTCCTTCATACTGCCCATC
CGTATCAGG
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Coding sequence (CDS) from alignment at scaffold_11:324990..326548+

>mRNA_5687 ID=mRNA_5687|Name=jgi.p|Nanoce1779_2|589991|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_11:324990..326548+ (Nannochloropsis oceanica)
ATGCTGCAGGTGGCAATGGTGGTGCTGAGAAGGCGGCTTGTTCTTGCAGC
GTCGCCCAGTGTGTCCGCTGGAGCAGCGGCGGCAGTTGGAGGATCAAGAA
GGCTAGGCCTTGCCTCCCTGGCAAACCTCACCACTCAGCGGCAGCAGCAT
CTACAGAAACATCGGCAGCAACAGTCGAACAATAGCTTAGTATGGACGCG
GGCGTTTCATGCGTCAACATCCAGTCGCATGATGGCAGAGGTGGTCATGA
CGGTTCCCAGCATGGGTGACTCGATTACGGAGGGTACCATCAAGTCGTGG
GAGAAGAATGTTGGGGACGTGGTTGCACTGGACGATGTTGTGGTGGTCAT
AGAGACAGACAAGGTCTCTGTTGACATTCGAGCGAAAGACAAGGGCATTC
TCGTCGAGCAATTCGCAGCCGTGGACGATAATGTTGATGTCGGTGCCAAT
CTCCTCAAGATTGATACAAGTGCCACTGCCTCCGCCTCCGCTCCTTCAGC
TGCCCAGAAATTAGTCCCCTCTGATGCTGCTCCTGATGCTGCTCCTGCCT
CTGTTCCTGCTCCTGCCTCTGCTCCTGCCTCTGATCCTGCTCCTACAACC
GCATCAGAAGTGCAACGAAAGCCTCTCATCAAATTTTTGGGGAAGCGGTC
CTTGATTGGCAAGGACATTCCTGCTGCTGCGTCTGCTGCCCAAATGGCAA
GGACAGGAGCAGCAGCAACAGGGCCCGCGCCTGGAAGGTATGAAGACCTT
AAAAGCACACCGGGTTCCAAAACGTTTGATGAGATGCCAGCCATGTTTGG
AAGGCCTTCGTTGAGCGAAAAGGAGATTGAGGCGATCGAGAGCGGGGGGG
CGACGCTTTGAATGCTGCAGGTGGCAATGGTGGTGCTGAGAAGGCGGCTT
GTTCTTGCAGCGTCGCCCAGTGTGTCCGCTGGAGCAGCGGCGGCAGTTGG
AGGATCAAGAAGGCTAGGCCTTGCCTCCCTGGCAAACCTCACCACTCAGC
GGCAGCAGCATCTACAGAAACATCGGCAGCAACAGTCGAACAATAGCTTA
GTATGGACGCGGGCGTTTCATGCGTCAACATCCAGTCGCATGATGGCAGA
GGTGGTCATGACGGTTCCCAGCATGGGTGACTCGATTACGGAGGGTACCA
TCAAGTCGTGGGAGAAGAATGTTGGGGACGTGGTTGCACTGGACGATGTT
GTGGTGGTCATAGAGACAGACAAGGTCTCTGTTGACATTCGAGCGAAAGA
CAAGGGCATTCTCGTCGAGCAATTCGCAGCCGTGGACGATAATGTTGATG
TCGGTGCCAATCTCCTCAAGATTGATACAAGTGCCACTGCCTCCGCCTCC
GCTCCTTCAGCTGCCCAGAAATTAGTCCCCTCTGATGCTGCTCCTGATGC
TGCTCCTGCCTCTGTTCCTGCTCCTGCCTCTGCTCCTGCCTCTGATCCTG
CTCCTACAACCGCATCAGAAGTGCAACGAAAGCCTCTCATCAAATTTTTG
GGGAAGCGGTCCTTGATTGGCAAGGACATTCCTGCTGCTGCGTCTGCTGC
CCAAATGGCAAGGACAGGAGCAGCAGCAACAGGGCCCGCGCCTGGAAGGT
ATGAAGACCTTAAAAGCACACCGGGTTCCAAAACGTTTGATGAGATGCCA
GCCATGTTTGGAAGGCCTTCGTTGAGCGAAAAGGAGATTGAGGCGATCGA
GAGCGGGGGGGCGACGCTTTGA
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Synonyms
Publications