jgi.p|Nanoce1779_2|592445, mRNA_5410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592445
Unique NamemRNA_5410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1126
Alignment locationscaffold_13:372790..374069 +

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Properties
Property NameValue
TranscriptId592531
TrackFilteredModels2
ProteinId592445
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:372790..374069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592445gene_5410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592445mRNA_5410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5410CDS_5410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5410 ID=mRNA_5410|Name=jgi.p|Nanoce1779_2|592445|organism=Nannochloropsis oceanica|type=mRNA|length=1126bp
AACCACAGTAATTTACGCTGCCACCTTCTTTGATTATCCACCACTTTCAC
AAGAGCGCAAGTACCCGTACGGAATTGTGCCAGGTGGCCACCAGCAATTC
CAGCCAGTATGAGGACGCCCTCTCTTCTTCTCCTCCTCCCTCTCCTCTCC
ATGGGAGGGTGCCTCCTCGTCTTGCCTGCGCTTGCAGCCGCGCAGGAGGT
CGACAACATAAACGACGGCGTGGATGCATTCGAGGGGTTACCGGTTGAGG
GGGAGGAAGCCGTTCCAGTCTCGGCGGGGGACGTAGAAGTCTCGATTGGC
CGTGCGCTGGATGAACTTGACGCGGCTGCCTCGTCGAGGGGGAAGGAGAC
ACTCAAGCAAGGCCGGGAAAAGATGACCCGGGCCAAGAAAGCAACCGAAA
AAGTTGCTGGCAGTAATGGTGATGGCGGAGTTAGACGGGGAGAGGTGCCT
TTCGATTCGATCGTAGAGCGGCTGGACAAGCTTGAGCGGCGGGTACAGGC
GGATGGCGAGGAGATAAGGTATTCGCTCGATAGCTTAGAGGATGACAACA
CGAGTATGCTTGAAATCGTCTCCCAAACCGTCTTTGATTACATCACCACC
CGTCTCACCCCCAAAACGGACCGGCAATGCTCCTGGAGCTACAGCCAATG
CAAGTGTGTACCCACATGCCGGTGCTCCTACCAGTTCCAACTGGGCGACT
ATACCCTTTCTCGCTCTTGCCGGGTCAACCACAACACCACAGCTGTCGCG
CTCTGTGACGCGGACTCGCACGACGAGGGCAATGATGACAATGTGCTCGT
ACAGGCCCAACGGGCTCTGCTTCGAGGCCTGGGACAGTTGGAAGAAGTGT
TGGCTTATTACGCGCCAGCCACTAGCCCCGAATGCGATTGGCGGTGGTCG
TCGTTGAGGTGTGAACCCAGGGAGGACTGTCGGTTTTATTTTAAGCTGGG
TGACTACCATGTGGGGAGGTCGTGTCGATTGCGGGTGGCGGTGGAGGCAG
AGTTGGCGGAGAAGAAACGGGAAAAAGAGGAGAGGGAGGCAGCGGCCAAG
GCAAGGAAGGTTTTGGAGGAGGAAGAGGAGGAAGAGGAAGAGGACGAGGA
CGAAGAGGACGAGGACGAGGAGGACG
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protein sequence of jgi.p|Nanoce1779_2|592445

>mRNA_5410-protein ID=mRNA_5410-protein|Name=jgi.p|Nanoce1779_2|592445|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MRTPSLLLLLPLLSMGGCLLVLPALAAAQEVDNINDGVDAFEGLPVEGEE
AVPVSAGDVEVSIGRALDELDAAASSRGKETLKQGREKMTRAKKATEKVA
GSNGDGGVRRGEVPFDSIVERLDKLERRVQADGEEIRYSLDSLEDDNTSM
LEIVSQTVFDYITTRLTPKTDRQCSWSYSQCKCVPTCRCSYQFQLGDYTL
SRSCRVNHNTTAVALCDADSHDEGNDDNVLVQAQRALLRGLGQLEEVLAY
YAPATSPECDWRWSSLRCEPREDCRFYFKLGDYHVGRSCRLRVAVEAELA
EKKREKEEREAAAKARKVLEEEEEEEEEDEDEEDEDEED
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mRNA from alignment at scaffold_13:372790..374069+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5410 ID=mRNA_5410|Name=jgi.p|Nanoce1779_2|592445|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp|location=Sequence derived from alignment at scaffold_13:372790..374069+ (Nannochloropsis oceanica)
AACCACAGTAATTTACGCTGCCACCTTCTTTGATTATCCACCACTTTCAC
AAGAGCGCAAGTACCCGTACGGAATTGTGCCAGGTGGCCACCAGCAATTC
CAGCCAGTATGAGGACGCCCTCTCTTCTTCTCCTCCTCCCTCTCCTCTCC
ATGGGAGGGTGCCTCCTCGTCTTGCCTGCGCTTGCAGCCGCGCAGGAGGT
CGACAACATAAACGACGGCGTGGATGCATTCGAGGGGTTACCGGTTGAGG
GGGAGGAAGCCGTTCCAGTCTCGGCGGGGGACGTAGAAGTCTCGATTGGC
CGTGCGCTGGATGAACTTGACGCGGCTGCCTCGTCGAGGGGGAAGGAGAC
ACTCAAGCAAGGCCGGGAAAAGATGACCCGGGCCAAGAAAGCAACCGAAA
AAGTTGCTGGCAGTAATGGTGATGGCGGAGTTAGACGGGGAGAGGTGCCT
TTCGATTCGATCGTAGAGCGGCTGGACAAGCTTGAGCGGCGGGTACAGGC
GGATGGCGAGGAGATAAGGTATTCGCTCGATAGCTTAGAGGATGACAACA
CGAGTATGCTTGAAATGTACGTTTACGCGAGAGGGATGTGGATGGTGGGT
ATATGAATGAGGACATGGATGCAATTGCGAGCTTGGGCGCTGTTGCTTTT
CATTCATTCACCTCCCCTCCTTCCCTCCCTCCAATTATCCCAATTCCCAT
CTCCCTCACCCCCCACACAGCGTCTCCCAAACCGTCTTTGATTACATCAC
CACCCGTCTCACCCCCAAAACGGACCGGCAATGCTCCTGGAGCTACAGCC
AATGCAAGTGTGTACCCACATGCCGGTGCTCCTACCAGTTCCAACTGGGC
GACTATACCCTTTCTCGCTCTTGCCGGGTCAACCACAACACCACAGCTGT
CGCGCTCTGTGACGCGGACTCGCACGACGAGGGCAATGATGACAATGTGC
TCGTACAGGCCCAACGGGCTCTGCTTCGAGGCCTGGGACAGTTGGAAGAA
GTGTTGGCTTATTACGCGCCAGCCACTAGCCCCGAATGCGATTGGCGGTG
GTCGTCGTTGAGGTGTGAACCCAGGGAGGACTGTCGGTTTTATTTTAAGC
TGGGTGACTACCATGTGGGGAGGTCGTGTCGATTGCGGGTGGCGGTGGAG
GCAGAGTTGGCGGAGAAGAAACGGGAAAAAGAGGAGAGGGAGGCAGCGGC
CAAGGCAAGGAAGGTTTTGGAGGAGGAAGAGGAGGAAGAGGAAGAGGACG
AGGACGAAGAGGACGAGGACGAGGAGGACG
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Coding sequence (CDS) from alignment at scaffold_13:372790..374069+

>mRNA_5410 ID=mRNA_5410|Name=jgi.p|Nanoce1779_2|592445|organism=Nannochloropsis oceanica|type=CDS|length=2036bp|location=Sequence derived from alignment at scaffold_13:372790..374069+ (Nannochloropsis oceanica)
ATGAGGACGCCCTCTCTTCTTCTCCTCCTCCCTCTCCTCTCCATGGGAGG
GTGCCTCCTCGTCTTGCCTGCGCTTGCAGCCGCGCAGGAGGTCGACAACA
TAAACGACGGCGTGGATGCATTCGAGGGGTTACCGGTTGAGGGGGAGGAA
GCCGTTCCAGTCTCGGCGGGGGACGTAGAAGTCTCGATTGGCCGTGCGCT
GGATGAACTTGACGCGGCTGCCTCGTCGAGGGGGAAGGAGACACTCAAGC
AAGGCCGGGAAAAGATGACCCGGGCCAAGAAAGCAACCGAAAAAGTTGCT
GGCAGTAATGGTGATGGCGGAGTTAGACGGGGAGAGGTGCCTTTCGATTC
GATCGTAGAGCGGCTGGACAAGCTTGAGCGGCGGGTACAGGCGGATGGCG
AGGAGATAAGGTATTCGCTCGATAGCTTAGAGGATGACAACACGAGTATG
CTTGAAATCGTCTCCCAAACCGTCTTTGATTACATCACCACCCGTCTCAC
CCCCAAAACGGACCGGCAATGCTCCTGGAGCTACAGCCAATGCAAGTGTG
TACCCACATGCCGGTGCTCCTACCAGTTCCAACTGGGCGACTATACCCTT
TCTCGCTCTTGCCGGGTCAACCACAACACCACAGCTGTCGCGCTCTGTGA
CGCGGACTCGCACGACGAGGGCAATGATGACAATGTGCTCGTACAGGCCC
AACGGGCTCTGCTTCGAGGCCTGGGACAGTTGGAAGAAGTGTTGGCTTAT
TACGCGCCAGCCACTAGCCCCGAATGCGATTGGCGGTGGTCGTCGTTGAG
GTGTGAACCCAGGGAGGACTGTCGGTTTTATTTTAAGCTGGGTGACTACC
ATGTGGGGAGGTCGTGTCGATTGCGGGTGGCGGTGGAGGCAGAGTTGGCG
GAGAAGAAACGGGAAAAAGAGGAGAGGGAGGCAGCGGCCAAGGCAAGGAA
GGTTTTGGAGGAGGAAGAGGAGGAAGAGGAAGAGGACGAGGACGAAGAGG
ACGAGGACGAGGAGGACGATGAGGACGCCCTCTCTTCTTCTCCTCCTCCC
TCTCCTCTCCATGGGAGGGTGCCTCCTCGTCTTGCCTGCGCTTGCAGCCG
CGCAGGAGGTCGACAACATAAACGACGGCGTGGATGCATTCGAGGGGTTA
CCGGTTGAGGGGGAGGAAGCCGTTCCAGTCTCGGCGGGGGACGTAGAAGT
CTCGATTGGCCGTGCGCTGGATGAACTTGACGCGGCTGCCTCGTCGAGGG
GGAAGGAGACACTCAAGCAAGGCCGGGAAAAGATGACCCGGGCCAAGAAA
GCAACCGAAAAAGTTGCTGGCAGTAATGGTGATGGCGGAGTTAGACGGGG
AGAGGTGCCTTTCGATTCGATCGTAGAGCGGCTGGACAAGCTTGAGCGGC
GGGTACAGGCGGATGGCGAGGAGATAAGGTATTCGCTCGATAGCTTAGAG
GATGACAACACGAGTATGCTTGAAATCGTCTCCCAAACCGTCTTTGATTA
CATCACCACCCGTCTCACCCCCAAAACGGACCGGCAATGCTCCTGGAGCT
ACAGCCAATGCAAGTGTGTACCCACATGCCGGTGCTCCTACCAGTTCCAA
CTGGGCGACTATACCCTTTCTCGCTCTTGCCGGGTCAACCACAACACCAC
AGCTGTCGCGCTCTGTGACGCGGACTCGCACGACGAGGGCAATGATGACA
ATGTGCTCGTACAGGCCCAACGGGCTCTGCTTCGAGGCCTGGGACAGTTG
GAAGAAGTGTTGGCTTATTACGCGCCAGCCACTAGCCCCGAATGCGATTG
GCGGTGGTCGTCGTTGAGGTGTGAACCCAGGGAGGACTGTCGGTTTTATT
TTAAGCTGGGTGACTACCATGTGGGGAGGTCGTGTCGATTGCGGGTGGCG
GTGGAGGCAGAGTTGGCGGAGAAGAAACGGGAAAAAGAGGAGAGGGAGGC
AGCGGCCAAGGCAAGGAAGGTTTTGGAGGAGGAAGAGGAGGAAGAGGAAG
AGGACGAGGACGAAGAGGACGAGGACGAGGAGGACG
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Synonyms
Publications