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Properties
| Property Name | Value |
|---|
| TranscriptId | 592669 |
| Track | FilteredModels2 |
| ProteinId | 592583 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:468409..470034 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5457 ID=mRNA_5457|Name=jgi.p|Nanoce1779_2|592583|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp
TCTTGGCCATATGCGAGCGTCTGTAGCTGATTTAGCGGTGGTGCGTGGGT
GCGTGGCTTGCTGCCTGTGCTTTTCTTGTGTTAAAGCCAGAAGTGTGGGT
AAGATGCCGGAAGAATATCTCATGACAGTACTATTGTCATCGTGCTCGTG
TCGCATGCAAGACTGAGAAAGAAGCAGACAAATACGTACCAGCATGGCCG
GACGGATGGAGAAGCTTCTCTCGCTTCCACCAGCACGACCAAAGGCCTGT
TGCTTGCTTGGACACTTCTTCACCACATCACAGACAGGACCAATCCACAT
TCACACATCGCACCCACATCTACACATTCACAGGTTCACACTGCCTGCAG
AGAGCTGCATCGAAATCATCATGTCCTCGGCAACACTCTTCTCCTGCGCC
TCCAGTCAGCCCCGCTGGTCGAGCTCCGTGCGTATCACGCGCACACCACT
GGTGGCTGTGCCACTGATCGGGCTCCTTCTCCTTACAATACTACCTCTAC
CTACCTCTGCCTTTATGATTCCTGGTGTGAAGAGCACCGGTTCGCGGGCC
GCCACCAAGAGTCACCCCGTGCTGGGCCTCTGCCCTCTTTCTTGTTCCGT
CATCTGCGCCACGTCCACAACCACCACAACAATTTTCGGGGCTGGAGCCA
CTAGTTACGACGACGAAAAAGAGGGCGAACAAGTGCTGAGTTTGCACACG
CTCGAGATTCCTTTGCAAGACGATCCGGGGAATTACCGCACGTTCTTGGA
GGAGTACTTCAAGGGCTCGAATCTCCTTCGTTGGCATTTGGGGTCGGTGG
ACACAGAGAAGGGCGTGGCGCACGCAGAAGTGGTGATTGTAAGCTCAACA
GGGGTGACAGTGCCGTTGTCTCCCTAGCCTTATTCACCGGGGAAGCAGGG
TGTTGGCCCGCTCCTTGTGTGTTTCGCGTAATAAAAAGAGAGATGGCGCC
AAATGGATAATGCGATGACAAACGCAAGCGCGTTTCCCGGATCTTTACAG
TCCATGTTTGCTGCTTACGCTGACACTCTATCGTTTGGGCTTAGTAACTA
TGCGGTCAGTGGCCAGCATCGGTGCACAATGCCCGAATTAGAGGGCAGCA
GTACAAGCGGCGTCATGACTCCTGCCGGCGTTCTTTTCAAGTTTGAGGAG
GTTGACTCACTGATATATCCGGACGACCCGGGTGAGGTCGCAACAATTTT
CATCGTACACAGGATATGGTTTGCTGCAAAGTATGGCTGGAAAATTTCGG
CGTTCTTTTCGCCTGGCTTTGCGTATGATGACTTGGATAAACTCCAGCTT
CACACCTGTCTATTCCGAGTAAGGGCGACGACCGGTGTGGTAGAAGTAGC
ACTGCTGAGAGCTTGTGCGCAATCTTTGGTGTCCTGTCCCGGGCATGGGG
ATTGAGGTCAAGGGGAAATGGTCACAGGGGCGGGGTCGCCAGCGAGTATT
TTACATGTACATCCCTTCTATTGTGCAGTTTACCGGGCATTTTTTGGTTT
GAGATTTAGCAAACGTGTTATGGCTTGAGGCCCATCCAGACGCGTGCACA
CTGAACAATTAGTCTGCATGGGTTTGAGCAAAAGATATAATTCCGCACGA
AGAAATGGCGGCGCTGATCTCTTTGT back to topprotein sequence of jgi.p|Nanoce1779_2|592583 >mRNA_5457-protein ID=mRNA_5457-protein|Name=jgi.p|Nanoce1779_2|592583|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MAGRMEKLLSLPPARPKACCLLGHFFTTSQTGPIHIHTSHPHLHIHRFTL
PAESCIEIIMSSATLFSCASSQPRWSSSVRITRTPLVAVPLIGLLLLTIL
PLPTSAFMIPGVKSTGSRAATKSHPVLGLCPLSCSVICATSTTTTTIFGA
GATSYDDEKEGEQVLSLHTLEIPLQDDPGNYRTFLEEYFKGSNLLRWHLG
SVDTEKGVAHAEVVIVSSTGVTVPLSP* back to topmRNA from alignment at scaffold_13:468409..470034+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5457 ID=mRNA_5457|Name=jgi.p|Nanoce1779_2|592583|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_13:468409..470034+ (Nannochloropsis oceanica)
TCTTGGCCATATGCGAGCGTCTGTAGCTGATTTAGCGGTGGTGCGTGGGT
GCGTGGCTTGCTGCCTGTGCTTTTCTTGTGTTAAAGCCAGAAGTGTGGGT
AAGATGCCGGAAGAATATCTCATGACAGTACTATTGTCATCGTGCTCGTG
TCGCATGCAAGACTGAGAAAGAAGCAGACAAATACGTACCAGCATGGCCG
GACGGATGGAGAAGCTTCTCTCGCTTCCACCAGCACGACCAAAGGCCTGT
TGCTTGCTTGGACACTTCTTCACCACATCACAGACAGGACCAATCCACAT
TCACACATCGCACCCACATCTACACATTCACAGGTTCACACTGCCTGCAG
AGAGCTGCATCGAAATCATCATGTCCTCGGCAACACTCTTCTCCTGCGCC
TCCAGTCAGCCCCGCTGGTCGAGCTCCGTGCGTATCACGCGCACACCACT
GGTGGCTGTGCCACTGATCGGGCTCCTTCTCCTTACAATACTACCTCTAC
CTACCTCTGCCTTTATGATTCCTGGTGTGAAGAGCACCGGTTCGCGGGCC
GCCACCAAGAGTCACCCCGTGCTGGGCCTCTGCCCTCTTTCTTGTTCCGT
CATCTGCGCCACGTCCACAACCACCACAACAATTTTCGGGGCTGGAGCCA
CTAGTTACGACGACGAAAAAGAGGGCGAACAAGTGCTGAGTTTGCACACG
CTCGAGATTCCTTTGCAAGACGATCCGGGGAATTACCGCACGTTCTTGGA
GGAGTACTTCAAGGGCTCGAATCTCCTTCGTTGGCATTTGGGGTCGGTGG
ACACAGAGAAGGGCGTGGCGCACGCAGAAGTGGTGATTGTAAGCTCAACA
GGGGTGACAGTGCCGTTGTCTCCCTAGCCTTATTCACCGGGGAAGCAGGG
TGTTGGCCCGCTCCTTGTGTGTTTCGCGTAATAAAAAGAGAGATGGCGCC
AAATGGATAATGCGATGACAAACGCAAGCGCGTTTCCCGGATCTTTACAG
TCCATGTTTGCTGCTTACGCTGACACTCTATCGTTTGGGCTTAGTAACTA
TGCGGTCAGTGGCCAGCATCGGTGCACAATGCCCGAATTAGAGGGCAGCA
GTACAAGCGGCGTCATGACTCCTGCCGGCGTTCTTTTCAAGTTTGAGGAG
GTTGACTCACTGATATATCCGGACGACCCGGGTGAGGTCGCAACAATTTT
CATCGTACACAGGATATGGTTTGCTGCAAAGTATGGCTGGAAAATTTCGG
CGTTCTTTTCGCCTGGCTTTGCGTATGATGACTTGGATAAACTCCAGCTT
CACACCTGTCTATTCCGAGTAAGGGCGACGACCGGTGTGGTAGAAGTAGC
ACTGCTGAGAGCTTGTGCGCAATCTTTGGTGTCCTGTCCCGGGCATGGGG
ATTGAGGTCAAGGGGAAATGGTCACAGGGGCGGGGTCGCCAGCGAGTATT
TTACATGTACATCCCTTCTATTGTGCAGTTTACCGGGCATTTTTTGGTTT
GAGATTTAGCAAACGTGTTATGGCTTGAGGCCCATCCAGACGCGTGCACA
CTGAACAATTAGTCTGCATGGGTTTGAGCAAAAGATATAATTCCGCACGA
AGAAATGGCGGCGCTGATCTCTTTGT back to topCoding sequence (CDS) from alignment at scaffold_13:468409..470034+ >mRNA_5457 ID=mRNA_5457|Name=jgi.p|Nanoce1779_2|592583|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_13:468409..470034+ (Nannochloropsis oceanica)
ATGGCCGGACGGATGGAGAAGCTTCTCTCGCTTCCACCAGCACGACCAAA
GGCCTGTTGCTTGCTTGGACACTTCTTCACCACATCACAGACAGGACCAA
TCCACATTCACACATCGCACCCACATCTACACATTCACAGGTTCACACTG
CCTGCAGAGAGCTGCATCGAAATCATCATGTCCTCGGCAACACTCTTCTC
CTGCGCCTCCAGTCAGCCCCGCTGGTCGAGCTCCGTGCGTATCACGCGCA
CACCACTGGTGGCTGTGCCACTGATCGGGCTCCTTCTCCTTACAATACTA
CCTCTACCTACCTCTGCCTTTATGATTCCTGGTGTGAAGAGCACCGGTTC
GCGGGCCGCCACCAAGAGTCACCCCGTGCTGGGCCTCTGCCCTCTTTCTT
GTTCCGTCATCTGCGCCACGTCCACAACCACCACAACAATTTTCGGGGCT
GGAGCCACTAGTTACGACGACGAAAAAGAGGGCGAACAAGTGCTGAGTTT
GCACACGCTCGAGATTCCTTTGCAAGACGATCCGGGGAATTACCGCACGT
TCTTGGAGGAGTACTTCAAGGGCTCGAATCTCCTTCGTTGGCATTTGGGG
TCGGTGGACACAGAGAAGGGCGTGGCGCACGCAGAAGTGGTGATTGTAAG
CTCAACAGGGGTGACAGTGCCGTTGTCTCCCTAG back to top
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