jgi.p|Nanoce1779_2|529833, mRNA_6000 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|529833
Unique NamemRNA_6000
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length312
Alignment locationscaffold_14:276807..277118 +

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Properties
Property NameValue
TranscriptId529919
TrackFilteredModels2
ProteinId529833
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:276807..277118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529833gene_6000Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|529833mRNA_6000-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6000CDS_6000Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6000 ID=mRNA_6000|Name=jgi.p|Nanoce1779_2|529833|organism=Nannochloropsis oceanica|type=mRNA|length=312bp
ATGCCCGACGGCCGGCAAGAATGGCGGTACACCAATGGGACGGTCAAGGA
AGTTTTTCCTTCGGGGAAGAGCATCGTAAGGTTTACGAATGGTGATGTCA
AGACGACGGAGCCAGTGACGGGGGATGTGGTATATTGGTATGCTGCCAAT
CAAACGAGGCACACGACTGTCAAGAGGACAGGTTTGGAAGTGTTTGAGTT
CCCCACGGGCCAGGTGGAAAGGCATTATCCGAATGGGGTGCGTGAGATAG
AGCCACCCGCTGGGACTGTGGGTAGGGCGCCAAGCATCTTCAGAAAAGTG
GTAGCTTCGTGA
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protein sequence of jgi.p|Nanoce1779_2|529833

>mRNA_6000-protein ID=mRNA_6000-protein|Name=jgi.p|Nanoce1779_2|529833|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MPDGRQEWRYTNGTVKEVFPSGKSIVRFTNGDVKTTEPVTGDVVYWYAAN
QTRHTTVKRTGLEVFEFPTGQVERHYPNGVREIEPPAGTVGRAPSIFRKV
VAS*
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mRNA from alignment at scaffold_14:276807..277118+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6000 ID=mRNA_6000|Name=jgi.p|Nanoce1779_2|529833|organism=Nannochloropsis oceanica|type=mRNA|length=312bp|location=Sequence derived from alignment at scaffold_14:276807..277118+ (Nannochloropsis oceanica)
ATGCCCGACGGCCGGCAAGAATGGCGGTACACCAATGGGACGGTCAAGGA
AGTTTTTCCTTCGGGGAAGAGCATCGTAAGGTTTACGAATGGTGATGTCA
AGACGACGGAGCCAGTGACGGGGGATGTGGTATATTGGTATGCTGCCAAT
CAAACGAGGCACACGACTGTCAAGAGGACAGGTTTGGAAGTGTTTGAGTT
CCCCACGGGCCAGGTGGAAAGGCATTATCCGAATGGGGTGCGTGAGATAG
AGCCACCCGCTGGGACTGTGGGTAGGGCGCCAAGCATCTTCAGAAAAGTG
GTAGCTTCGTGA
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Coding sequence (CDS) from alignment at scaffold_14:276807..277118+

>mRNA_6000 ID=mRNA_6000|Name=jgi.p|Nanoce1779_2|529833|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_14:276807..277118+ (Nannochloropsis oceanica)
ATGCCCGACGGCCGGCAAGAATGGCGGTACACCAATGGGACGGTCAAGGA
AGTTTTTCCTTCGGGGAAGAGCATCGTAAGGTTTACGAATGGTGATGTCA
AGACGACGGAGCCAGTGACGGGGGATGTGGTATATTGGTATGCTGCCAAT
CAAACGAGGCACACGACTGTCAAGAGGACAGGTTTGGAAGTGTTTGAGTT
CCCCACGGGCCAGGTGGAAAGGCATTATCCGAATGGGGTGCGTGAGATAG
AGCCACCCGCTGGGACTGTGGGTAGGGCGCCAAGCATCTTCAGAAAAGTG
GTAGCTTCGTGA
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Synonyms
Publications