jgi.p|Nanoce1779_2|593371, mRNA_5981 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593371
Unique NamemRNA_5981
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2165
Alignment locationscaffold_14:237547..239711 -

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Properties
Property NameValue
TranscriptId593457
TrackFilteredModels2
ProteinId593371
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:237547..239711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593371gene_5981Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593371mRNA_5981-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5981CDS_5981Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5981 ID=mRNA_5981|Name=jgi.p|Nanoce1779_2|593371|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp
ACCAAGAACCTCGCCAACATCCTCGGCAACGAGAAGAATGGCGCGACCGG
CGCGCTGCTATAGGCCAAATCCCAATTTCCCGCGGCCACCGCGGCACCCA
CTGTGGTGTCAGGCGTTGCTTGGTGCTCTCCAATCTTCTCCAAGACATTT
ATATAGTTCATGATAGCCTCTGAGGGACCTGCCAGAATTTCATCCACAAG
TCGAGTTTCGACCAGGAGGACCTTATCCTCGAGGCTCATCTCTTTTTCCA
CGGAGCGGGTGCGATGCCATTCCTCCACGGCGGCCATTCTGCTGTCACGG
AGGATATTTTCGACTGATGTCCGGTCGACTGGAGGCATGGGGTTGAGGTT
CGCGTCGGCGGCACCCAGGAGGGATGGCGGAGAAGAGATGGTGGTGGAGG
CGGCGGCAGAGGTGGGTTCGGTGGTAGACGGAGCCGAGGGAGGAGGAACG
AGAAGGTCAGCTGCGGTGGTGATGACGGCCTTGGTGGTTGTGATTCTGCT
CTTTGCCTTAGCTTGTTTCATGGCCTGCTGCACGGTGGTGGCGCTAGTGG
GGGAAGAGACGGAGAGAACGTCGTCATCGACGACTATCACGCCGCGGGCC
CGGTCTGCCCCAGTCGTCATCCGCTTAATGGTCTTGGGGGCTGAGGGGGA
GGAAAGCTCCTCGATCACCTTCGCTGCTTCCTCGGCGGGCATCGACGGGA
TCTTCACCTTGAGAGCAGGCCCATTCACCTCCTTATCAACCGACGCGGCA
GCAGCAGGAGGAGCAGGGGAGGCAGCGATTACAGCCTTATCTACCGATGC
TGCTGCCGATACAGGGGAAGACGAAGGAGGAGGCATCTTTTGCTTGTGCA
GCTGGAGACGTTGCTGGGCTTGGGCAAGAGCGGCCTCTGCCTTCTTCCTT
CGGCGTTGTTCTTCCTCCCGTTCCTGGTCCCGACGCTTGCGAGGAGGGAT
GCCTCCCGGAGCACCACCCACCTTGGTGGCCCAGCTCGGTGTCGTGGCCT
TTGACGCAGTACCAGTCGTGAGGGGAGTGAGCTTCACAGGTGCAGGTACC
ATTGGCGGTGCGGCCTCCACCCTCTTGAGCTGCTGCTGTGGTCGGCGGGT
GGTAGCAGTAGCAGCACTTGAGGAGCGGGGATTGCGTTCGTCCACCCACC
GTTGACTGCGACCCTTCGTGACTTGCGGTCGGCGTCGAGGAGTCTCCTCC
TCACAGAACCCAGTGGTCACCGATTCGGACGCAGGTTCGACGACAGGTAC
AGAAGGTGAAGCAGCGACAACATCAGGAACAGCAGGGGAAGGAGAAGCAA
CGACTGGAGCAGATTTCTCCTTCGCTGCTGCTGGTGCTGCTGGTGCTGCT
GCCGCCGCCGGACGTTCAACCACTGAGGATGAGGCCATGGTAGAGCCAGG
CGTGAACGCTGAAGCCACATTTTCTTGATTTTGTTGTCGGGTATCATCCG
TGGCTGTGGACAGGCTATCGCTGGCAGCATTGGCTAGCTTGACACCTTCA
CCGAGAGCTTCCGTTAGGGAAGCCTGCATCGCCTCGGCGCTTGACTGGGC
CTTACTAAAAATATCTTTGGTGCTGCTGCTAATCATCGCAATCTCTTTGT
TAATCATCGCTGTGATATTGTTTTCATCGTTCCTCCTGCTGCTGCTGCTG
CTGCCGCTGCTACTGCCGCCCGGCTGTACAACCCTGCCATTTTCGTCCGT
CATCGCTTTACTGTGCAACCCGAACCTCTCCAATGTATGCTCCAAGGCAT
TCAAAAAATACATCGGGTCAGCATCGGCGTCCTTCTCGTCATATGGCAGC
ATCTCGTGGATACGATCGTCTAACTCCCAAATAGCATCGCGCACGGCTGC
TCGCAATTCGTCCCCAGCGACAGCTAACTCGTTGTCCTTCTTCCTTCGGT
TGTGGTATTGGACCGAGGTCATGCCATCGTCCATCGACCCCTCATCTGCA
CCTTCCGGCGCATTGGGGATGCGATCGAACCAATCGGCCTTGACATGGAT
AGGGGCAAGGCGAGTAGTGGAGGTGGTTGTGGAGATGATCGCCGGGCTGG
TCGTCGTGGAGCAAGACTTGGGGAGTCGGGAGCCCGGCAGAACGAAAGCC
ACCACTCCGGCCGCATGCCACGACGTCGCAGCGAAGAGTGCGAGGCGAGT
CTTCATTCTGTCGTT
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protein sequence of jgi.p|Nanoce1779_2|593371

>mRNA_5981-protein ID=mRNA_5981-protein|Name=jgi.p|Nanoce1779_2|593371|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MIASEGPARISSTSRVSTRRTLSSRLISFSTERVRCHSSTAAILLSRRIF
STDVRSTGGMGLRFASAAPRRDGGEEMVVEAAAEVGSVVDGAEGGGTRRS
AAVVMTALVVVILLFALACFMACCTVVALVGEETERTSSSTTITPRARSA
PVVIRLMVLGAEGEESSSITFAASSAGIDGIFTLRAGPFTSLSTDAAAAG
GAGEAAITALSTDAAADTGEDEGGGIFCLCSWRRCWAWARAASAFFLRRC
SSSRSWSRRLRGGMPPGAPPTLVAQLGVVAFDAVPVVRGVSFTGAGTIGG
AASTLLSCCCGRRVVAVAALEERGLRSSTHR*
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mRNA from alignment at scaffold_14:237547..239711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5981 ID=mRNA_5981|Name=jgi.p|Nanoce1779_2|593371|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp|location=Sequence derived from alignment at scaffold_14:237547..239711- (Nannochloropsis oceanica)
ACCAAGAACCTCGCCAACATCCTCGGCAACGAGAAGAATGGCGCGACCGG
CGCGCTGCTATAGGCCAAATCCCAATTTCCCGCGGCCACCGCGGCACCCA
CTGTGGTGTCAGGCGTTGCTTGGTGCTCTCCAATCTTCTCCAAGACATTT
ATATAGTTCATGATAGCCTCTGAGGGACCTGCCAGAATTTCATCCACAAG
TCGAGTTTCGACCAGGAGGACCTTATCCTCGAGGCTCATCTCTTTTTCCA
CGGAGCGGGTGCGATGCCATTCCTCCACGGCGGCCATTCTGCTGTCACGG
AGGATATTTTCGACTGATGTCCGGTCGACTGGAGGCATGGGGTTGAGGTT
CGCGTCGGCGGCACCCAGGAGGGATGGCGGAGAAGAGATGGTGGTGGAGG
CGGCGGCAGAGGTGGGTTCGGTGGTAGACGGAGCCGAGGGAGGAGGAACG
AGAAGGTCAGCTGCGGTGGTGATGACGGCCTTGGTGGTTGTGATTCTGCT
CTTTGCCTTAGCTTGTTTCATGGCCTGCTGCACGGTGGTGGCGCTAGTGG
GGGAAGAGACGGAGAGAACGTCGTCATCGACGACTATCACGCCGCGGGCC
CGGTCTGCCCCAGTCGTCATCCGCTTAATGGTCTTGGGGGCTGAGGGGGA
GGAAAGCTCCTCGATCACCTTCGCTGCTTCCTCGGCGGGCATCGACGGGA
TCTTCACCTTGAGAGCAGGCCCATTCACCTCCTTATCAACCGACGCGGCA
GCAGCAGGAGGAGCAGGGGAGGCAGCGATTACAGCCTTATCTACCGATGC
TGCTGCCGATACAGGGGAAGACGAAGGAGGAGGCATCTTTTGCTTGTGCA
GCTGGAGACGTTGCTGGGCTTGGGCAAGAGCGGCCTCTGCCTTCTTCCTT
CGGCGTTGTTCTTCCTCCCGTTCCTGGTCCCGACGCTTGCGAGGAGGGAT
GCCTCCCGGAGCACCACCCACCTTGGTGGCCCAGCTCGGTGTCGTGGCCT
TTGACGCAGTACCAGTCGTGAGGGGAGTGAGCTTCACAGGTGCAGGTACC
ATTGGCGGTGCGGCCTCCACCCTCTTGAGCTGCTGCTGTGGTCGGCGGGT
GGTAGCAGTAGCAGCACTTGAGGAGCGGGGATTGCGTTCGTCCACCCACC
GTTGACTGCGACCCTTCGTGACTTGCGGTCGGCGTCGAGGAGTCTCCTCC
TCACAGAACCCAGTGGTCACCGATTCGGACGCAGGTTCGACGACAGGTAC
AGAAGGTGAAGCAGCGACAACATCAGGAACAGCAGGGGAAGGAGAAGCAA
CGACTGGAGCAGATTTCTCCTTCGCTGCTGCTGGTGCTGCTGGTGCTGCT
GCCGCCGCCGGACGTTCAACCACTGAGGATGAGGCCATGGTAGAGCCAGG
CGTGAACGCTGAAGCCACATTTTCTTGATTTTGTTGTCGGGTATCATCCG
TGGCTGTGGACAGGCTATCGCTGGCAGCATTGGCTAGCTTGACACCTTCA
CCGAGAGCTTCCGTTAGGGAAGCCTGCATCGCCTCGGCGCTTGACTGGGC
CTTACTAAAAATATCTTTGGTGCTGCTGCTAATCATCGCAATCTCTTTGT
TAATCATCGCTGTGATATTGTTTTCATCGTTCCTCCTGCTGCTGCTGCTG
CTGCCGCTGCTACTGCCGCCCGGCTGTACAACCCTGCCATTTTCGTCCGT
CATCGCTTTACTGTGCAACCCGAACCTCTCCAATGTATGCTCCAAGGCAT
TCAAAAAATACATCGGGTCAGCATCGGCGTCCTTCTCGTCATATGGCAGC
ATCTCGTGGATACGATCGTCTAACTCCCAAATAGCATCGCGCACGGCTGC
TCGCAATTCGTCCCCAGCGACAGCTAACTCGTTGTCCTTCTTCCTTCGGT
TGTGGTATTGGACCGAGGTCATGCCATCGTCCATCGACCCCTCATCTGCA
CCTTCCGGCGCATTGGGGATGCGATCGAACCAATCGGCCTTGACATGGAT
AGGGGCAAGGCGAGTAGTGGAGGTGGTTGTGGAGATGATCGCCGGGCTGG
TCGTCGTGGAGCAAGACTTGGGGAGTCGGGAGCCCGGCAGAACGAAAGCC
ACCACTCCGGCCGCATGCCACGACGTCGCAGCGAAGAGTGCGAGGCGAGT
CTTCATTCTGTCGTT
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Coding sequence (CDS) from alignment at scaffold_14:237547..239711-

>mRNA_5981 ID=mRNA_5981|Name=jgi.p|Nanoce1779_2|593371|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_14:237547..239711- (Nannochloropsis oceanica)
ATGATAGCCTCTGAGGGACCTGCCAGAATTTCATCCACAAGTCGAGTTTC
GACCAGGAGGACCTTATCCTCGAGGCTCATCTCTTTTTCCACGGAGCGGG
TGCGATGCCATTCCTCCACGGCGGCCATTCTGCTGTCACGGAGGATATTT
TCGACTGATGTCCGGTCGACTGGAGGCATGGGGTTGAGGTTCGCGTCGGC
GGCACCCAGGAGGGATGGCGGAGAAGAGATGGTGGTGGAGGCGGCGGCAG
AGGTGGGTTCGGTGGTAGACGGAGCCGAGGGAGGAGGAACGAGAAGGTCA
GCTGCGGTGGTGATGACGGCCTTGGTGGTTGTGATTCTGCTCTTTGCCTT
AGCTTGTTTCATGGCCTGCTGCACGGTGGTGGCGCTAGTGGGGGAAGAGA
CGGAGAGAACGTCGTCATCGACGACTATCACGCCGCGGGCCCGGTCTGCC
CCAGTCGTCATCCGCTTAATGGTCTTGGGGGCTGAGGGGGAGGAAAGCTC
CTCGATCACCTTCGCTGCTTCCTCGGCGGGCATCGACGGGATCTTCACCT
TGAGAGCAGGCCCATTCACCTCCTTATCAACCGACGCGGCAGCAGCAGGA
GGAGCAGGGGAGGCAGCGATTACAGCCTTATCTACCGATGCTGCTGCCGA
TACAGGGGAAGACGAAGGAGGAGGCATCTTTTGCTTGTGCAGCTGGAGAC
GTTGCTGGGCTTGGGCAAGAGCGGCCTCTGCCTTCTTCCTTCGGCGTTGT
TCTTCCTCCCGTTCCTGGTCCCGACGCTTGCGAGGAGGGATGCCTCCCGG
AGCACCACCCACCTTGGTGGCCCAGCTCGGTGTCGTGGCCTTTGACGCAG
TACCAGTCGTGAGGGGAGTGAGCTTCACAGGTGCAGGTACCATTGGCGGT
GCGGCCTCCACCCTCTTGAGCTGCTGCTGTGGTCGGCGGGTGGTAGCAGT
AGCAGCACTTGAGGAGCGGGGATTGCGTTCGTCCACCCACCGTTGA
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Synonyms
Publications