jgi.p|Nanoce1779_2|594006, mRNA_6168 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594006
Unique NamemRNA_6168
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2095
Alignment locationscaffold_14:684897..687142 -

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Properties
Property NameValue
TranscriptId594092
TrackFilteredModels2
ProteinId594006
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:684897..687142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594006gene_6168Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594006mRNA_6168-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6168CDS_6168Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6168 ID=mRNA_6168|Name=jgi.p|Nanoce1779_2|594006|organism=Nannochloropsis oceanica|type=mRNA|length=2095bp
CCCCCCCCATTTAACATCGGAATCTGGACTGCAACCGGCGTCGCCGCGGG
CTTGGACTCCGTCTACCGCTGAGGCTTAGCCGACCGACAAGCCATTGAGT
CTCGCAAACTCACGTGCCATCTCATCCACCTATTCCCACGTATAGCCACG
GCAGCAGCGATAGCGGCGCACCCGTGTGTCTTGTAATTTTCCTTCTAGGG
TCCGTCCAGCAGCTTCCATCATTACAATGCAGCAGCAGCAGCAGCAGCAG
CGTCCCGTGTCCTTTCCCCTGCTCCTCCGCCTTGTGGTGCTGGTCGCCAC
AGCTTCCAGTGCCAGTGCCTTTGTAACCCGTACACTAGTGAACCAGGTAT
ATGGATCCTATTGGACACACGTGTATGGAGAGGTCATTGACCCGTCCCTC
CGTCCTTCTTCTCACGGCTGGACCCTCATGATGAGAACATTTGACTTCCT
TTCTCCCGCTTCCTTCCTCCGCCAAACCTTCCACCCTCTGCACGCACCAG
GAATGGCAAACCAACTGATTAAAATGTTATTTTCCTGTTTCTAATAGTTT
CAACCCTTTCCCCTCCCTCCGTTCCTCCCTTACCCCTTTTCATCCTTCCC
ATCCAGCCTTTCCGCTCGATACGGGCCACACCAAAATGTTACATGTCCAC
AGACAGAAACAATGGTTGTCAAGACTCCTCCTTCCCTTCTTCCTCCTTCT
CCCGCGCTGATCTCCTGAAGCGCACCCTCGCTGGGGCCACCTCCCTCTCC
TTCATTTCCCTCTTCAACGGGGGAAGAAGAGCCTCCGCAGCCACCACCCC
TGAGCAGGGTGCGACCGAATTAGCCTCCACTGCTCCTGCGCCTGCTTCTC
CTACTGCTTCTTCTGCTTCTACTCCCGAGGCAGCTCCTAAGGGCTCTGTC
AAGACAGCGTATGACTATTCAGTGCCGTACGACGGGGTGCGTGTGCCCCT
GGCAAATTTCAAGGGCAAGGCCGTGGTGGTGTGCAATGCCAAGACGGATG
ACCCGGAGAGCTTGAACCAGATTCCTGGCTTGACGTACTTGACCGGCAAA
TACAGCCCCAAAGGCCTCAAGATCTGGATCTTCACCACGGAGCAAGGCAC
GTTCGAGACGGACGAGGACCGAGTCATCCGCATCAAGTACTACCAACAGT
ATGGCTTTGGTCAGTACCCCAACGCCCTAATCTTCGACAAAATCGACGTG
GTGGGAAAACGCGCAGACCCCTTCTACAAGTACCTGTGCAAGACCCTCAA
GAACCCCAATAAAATCGCCCGCATCACCCTCAACTTTGAGAAGTTCCTCC
TCGACGCCAACGGTCGGCCCATTCGGCGGTATCCGCGGAAATACACCGCT
TACGACATGGAGGAGGACGTCAAGGCCGCTGTTGCTGGTCTTCCCCTCCC
TCCCCCTAGCCCTAAGCTGATCAAGGCATGGAGGGACGCGTATGTGGAGG
CGGAGAGAAGTGAGTACGCTTTTAAGAAGGGATTGAACTACTACGAACCG
CTTGGAGAAGACCAACGGAATCTGCCTTAGGCGTGGTGTCCTTCTTCCCT
TCCTTGTTTTTTTCTCTGCTGCTTGCTCGCTCGCTTCAGTGTTAACTTGT
TTGCTACGCCTCCCTGGGCCAGATGTGACGAGAGATAAGGCCAGTCGGAA
AAAGTGCGCGACGGATACATGCCGGCAGGACGAATACAGGAGATTTGAAG
ACCGAAGGTGAGGCATGGGAGGAGGGAGAGCGAGTGAGAAAGCGGAGAGA
GCATGAATGATAGCACGCGCGAGAGATCGCCGGAGGCATGGAATGAGAAA
GGGATGTAGGGAGGGATGGAGGAAGGAAGCGAGGCGGAGCGAGGGAGAGC
TTAAAGCAACTCATACATGTTGCGGAGAACATTTCAAAGTAAATAGAAAT
CATGCATCTCCCTATCGACTATCGGCACATGCACGTTGCTTTCTTATGGA
CAGGTTAAAGCCCCCTCTTGATGTGCCAGGAGCACCGACGACATTGATCA
CCTTGCCCGTTCTCTCCTCACTCTTCCCCTCTCCTTCACACACCAGGGAC
ATGGGACAAGTGAGGCAGAGGCAGGAAAGTAGCCCAGAACAAAAG
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protein sequence of jgi.p|Nanoce1779_2|594006

>mRNA_6168-protein ID=mRNA_6168-protein|Name=jgi.p|Nanoce1779_2|594006|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MSTDRNNGCQDSSFPSSSFSRADLLKRTLAGATSLSFISLFNGGRRASAA
TTPEQGATELASTAPAPASPTASSASTPEAAPKGSVKTAYDYSVPYDGVR
VPLANFKGKAVVVCNAKTDDPESLNQIPGLTYLTGKYSPKGLKIWIFTTE
QGTFETDEDRVIRIKYYQQYGFGQYPNALIFDKIDVVGKRADPFYKYLCK
TLKNPNKIARITLNFEKFLLDANGRPIRRYPRKYTAYDMEEDVKAAVAGL
PLPPPSPKLIKAWRDAYVEAERSEYAFKKGLNYYEPLGEDQRNLP*
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mRNA from alignment at scaffold_14:684897..687142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6168 ID=mRNA_6168|Name=jgi.p|Nanoce1779_2|594006|organism=Nannochloropsis oceanica|type=mRNA|length=2246bp|location=Sequence derived from alignment at scaffold_14:684897..687142- (Nannochloropsis oceanica)
CCCCCCCCATTTAACATCGGAATCTGGACTGCAACCGGCGTCGCCGCGGG
CTTGGACTCCGTCTACCGCTGAGGCTTAGCCGACCGACAAGCCATTGAGT
CTCGCAAACTCACGTGCCATCTCATCCACCTATTCCCACGTATAGCCACG
GCAGCAGCGATAGCGGCGCACCCGTGTGTCTTGTAATTTTCCTTCTAGGG
TCCGTCCAGCAGCTTCCATCATTACAATGCAGCAGCAGCAGCAGCAGCAG
CGTCCCGTGTCCTTTCCCCTGCTCCTCCGCCTTGTGGTGCTGGTCGCCAC
AGCTTCCAGTGCCAGTGCCTTTGTAACCCGTACACTAGTGAACCAGGTAT
ATGGATCCTATTGGACACACGTGTATGGAGAGGTCATTGACCCGTCCCTC
CGTCCTTCTTCTCACGGCTGGACCCTCATGATGAGAACATTTGACTTCCT
TTCTCCCGCTTCCTTCCTCCGCCAAACCTTCCACCCTCTGCACGCACCAG
GAATGGCAAACCAACTGATTAAAATGTTATTTTCCTGTTTCTAATAGTTT
CAACCCTTTCCCCTCCCTCCGTTCCTCCCTTACCCCTTTTCATCCTTCCC
ATCCAGCCTTTCCGCTCGATACGGGCCACACCAAAATGTTACATGTCCAC
AGACAGAAACAATGGTTGTCAAGACTCCTCCTTCCCTTCTTCCTCCTTCT
CCCGCGCTGATCTCCTGAAGCGCACCCTCGCTGGGGCCACCTCCCTCTCC
TTCATTTCCCTCTTCAACGGGGGAAGAAGAGCCTCCGCAGCCACCACCCC
TGAGCAGGGTGCGACCGAATTAGCCTCCACTGCTCCTGCGCCTGCTTCTC
CTACTGCTTCTTCTGCTTCTACTCCCGAGGCAGCTCCTAAGGGCTCTGTC
AAGACAGCGTATGACTATTCAGTGCCGTACGACGGGGTGCGTGTGCCCCT
GGCAAATTTCAAGGGCAAGGCCGTGGTGGTGTGCAATGCCAAGACGGATG
ACCCGGAGAGCTTGAACCAGATTCCTGGCTTGACGTACTTGACCGGCAAA
TACAGGTGAGAGAGACCAATCATGGTCTGGTCGTCTGTCTCGTTTGACTT
GACGAGGCATTCAACCGTCCATCCCTTGTCATTTCCCACCTACTCATGCC
TACATGATTAAACTTATTCAACCATATGCCTCCTCCCCCCCCCACGTTTC
ACTCAGCCCCAAAGGCCTCAAGATCTGGATCTTCACCACGGAGCAAGGCA
CGTTCGAGACGGACGAGGACCGAGTCATCCGCATCAAGTACTACCAACAG
TATGGCTTTGGTCAGTACCCCAACGCCCTAATCTTCGACAAAATCGACGT
GGTGGGAAAACGCGCAGACCCCTTCTACAAGTACCTGTGCAAGACCCTCA
AGAACCCCAATAAAATCGCCCGCATCACCCTCAACTTTGAGAAGTTCCTC
CTCGACGCCAACGGTCGGCCCATTCGGCGGTATCCGCGGAAATACACCGC
TTACGACATGGAGGAGGACGTCAAGGCCGCTGTTGCTGGTCTTCCCCTCC
CTCCCCCTAGCCCTAAGCTGATCAAGGCATGGAGGGACGCGTATGTGGAG
GCGGAGAGAAGTGAGTACGCTTTTAAGAAGGGATTGAACTACTACGAACC
GCTTGGAGAAGACCAACGGAATCTGCCTTAGGCGTGGTGTCCTTCTTCCC
TTCCTTGTTTTTTTCTCTGCTGCTTGCTCGCTCGCTTCAGTGTTAACTTG
TTTGCTACGCCTCCCTGGGCCAGATGTGACGAGAGATAAGGCCAGTCGGA
AAAAGTGCGCGACGGATACATGCCGGCAGGACGAATACAGGAGATTTGAA
GACCGAAGGTGAGGCATGGGAGGAGGGAGAGCGAGTGAGAAAGCGGAGAG
AGCATGAATGATAGCACGCGCGAGAGATCGCCGGAGGCATGGAATGAGAA
AGGGATGTAGGGAGGGATGGAGGAAGGAAGCGAGGCGGAGCGAGGGAGAG
CTTAAAGCAACTCATACATGTTGCGGAGAACATTTCAAAGTAAATAGAAA
TCATGCATCTCCCTATCGACTATCGGCACATGCACGTTGCTTTCTTATGG
ACAGGTTAAAGCCCCCTCTTGATGTGCCAGGAGCACCGACGACATTGATC
ACCTTGCCCGTTCTCTCCTCACTCTTCCCCTCTCCTTCACACACCAGGGA
CATGGGACAAGTGAGGCAGAGGCAGGAAAGTAGCCCAGAACAAAAG
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Coding sequence (CDS) from alignment at scaffold_14:684897..687142-

>mRNA_6168 ID=mRNA_6168|Name=jgi.p|Nanoce1779_2|594006|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_14:684897..687142- (Nannochloropsis oceanica)
CCCCAAAGGCCTCAAGATCTGGATCTTCACCACGGAGCAAGGCACGTTCG
AGACGGACGAGGACCGAGTCATCCGCATCAAGTACTACCAACAGTATGGC
TTTGGTCAGTACCCCAACGCCCTAATCTTCGACAAAATCGACGTGGTGGG
AAAACGCGCAGACCCCTTCTACAAGTACCTGTGCAAGACCCTCAAGAACC
CCAATAAAATCGCCCGCATCACCCTCAACTTTGAGAAGTTCCTCCTCGAC
GCCAACGGTCGGCCCATTCGGCGGTATCCGCGGAAATACACCGCTTACGA
CATGGAGGAGGACGTCAAGGCCGCTGTTGCTGGTCTTCCCCTCCCTCCCC
CTAGCCCTAAGCTGATCAAGGCATGGAGGGACGCGTATGTGGAGGCGGAG
AGAAGTGAGTACGCTTTTAAGAAGGGATTGAACTACTACGAACCGCTTGG
AGAAGACCAACGGAATCTGCCTTAGATGTCCACAGACAGAAACAATGGTT
GTCAAGACTCCTCCTTCCCTTCTTCCTCCTTCTCCCGCGCTGATCTCCTG
AAGCGCACCCTCGCTGGGGCCACCTCCCTCTCCTTCATTTCCCTCTTCAA
CGGGGGAAGAAGAGCCTCCGCAGCCACCACCCCTGAGCAGGGTGCGACCG
AATTAGCCTCCACTGCTCCTGCGCCTGCTTCTCCTACTGCTTCTTCTGCT
TCTACTCCCGAGGCAGCTCCTAAGGGCTCTGTCAAGACAGCGTATGACTA
TTCAGTGCCGTACGACGGGGTGCGTGTGCCCCTGGCAAATTTCAAGGGCA
AGGCCGTGGTGGTGTGCAATGCCAAGACGGATGACCCGGAGAGCTTGAAC
CAGATTCCTGGCTTGACGTACTTGACCGGCAAATACAGCCCCAAAGGCCT
CAAGATCTGGATCTTCACCACGGAGCAAGGCACGTTCGAGACGGACGAGG
ACCGAGTCATCCGCATCAAGTACTACCAACAGTATGGCTTTGGTCAGTAC
CCCAACGCCCTAATCTTCGACAAAATCGACGTGGTGGGAAAACGCGCAGA
CCCCTTCTACAAGTACCTGTGCAAGACCCTCAAGAACCCCAATAAAATCG
CCCGCATCACCCTCAACTTTGAGAAGTTCCTCCTCGACGCCAACGGTCGG
CCCATTCGGCGGTATCCGCGGAAATACACCGCTTACGACATGGAGGAGGA
CGTCAAGGCCGCTGTTGCTGGTCTTCCCCTCCCTCCCCCTAGCCCTAAGC
TGATCAAGGCATGGAGGGACGCGTATGTGGAGGCGGAGAGAAGTGAGTAC
GCTTTTAAGAAGGGATTGAACTACTACGAACCGCTTGGAGAAGACCAACG
GAATCTGCCTTAGATGTCCACAGACAGAAACAATGGTTGTCAAGACTCCT
CCTTCCCTTCTTCCTCCTTCTCCCGCGCTGATCTCCTGAAGCGCACCCTC
GCTGGGGCCACCTCCCTCTCCTTCATTTCCCTCTTCAACGGGGGAAGAAG
AGCCTCCGCAGCCACCACCCCTGAGCAGGGTGCGACCGAATTAGCCTCCA
CTGCTCCTGCGCCTGCTTCTCCTACTGCTTCTTCTGCTTCTACTCCCGAG
GCAGCTCCTAAGGGCTCTGTCAAGACAGCGTATGACTATTCAGTGCCGTA
CGACGGGGTGCGTGTGCCCCTGGCAAATTTCAAGGGCAAGGCCGTGGTGG
TGTGCAATGCCAAGACGGATGACCCGGAGAGCTTGAACCAGATTCCTGGC
TTGACGTACTTGACCGGCAAATACAG
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Synonyms
Publications