jgi.p|Nanoce1779_2|95572, mRNA_6470 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|95572
Unique Name	mRNA_6470
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1024
Alignment location	scaffold_15:736862..738764 +

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Properties


Property Name	Value
TranscriptId	95658
Track	FilteredModels2
ProteinId	95572

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:736862..738764 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|95572	gene_6470	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|95572	mRNA_6470-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6470	CDS_6470	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_15:736862..738764+
coding sequence from alignment at scaffold_15:736862..738764+

mRNA sequence

>mRNA_6470 ID=mRNA_6470|Name=jgi.p|Nanoce1779_2|95572|organism=Nannochloropsis oceanica|type=mRNA|length=1024bp
CATTGGGCCGGCGAGTGAGCATTGGGGGATGGGTGTAAGGAGGCCGTGTC
AGTTGTGCCTGTGTGTTTGTGTCTGGACATCCTCGGCAAATTTACGACAA
GAGTCATAATACTCAATCTTCCCCCTCCCTCCCCTCTCGTCTTTCTTATC
TGCTACGAAACCCTCACACAGGAGGCAAGCATGGGTCAGACACCCTCTTC
CTCCCTTCCCTCCTCCTCCGCCTCCTCCCCCGCCTCCTTCCTCGCCATCA
ACGCCGTGGCCGAGGGATGTTGCCAGCGATGGAGCAAGGTGGAAATGCGT
GGCTTGATGCGGAGAATGAAGGCATTAGGAGCCCGCTCGGGGAAGCCGAC
ACTTATCTACCGACGCGACCTCGAGACGGCCGTAAAAGAGACGGGGTTGA
GCGGGACCACCGAGGCCGAGATTTTGGACAAAGTCTACACTCTCCTCGAC
GACAAGGGCGAGGACCAAGGACCGCTTGGAACTACCCGGAGGAGGAGGAA
TAAGCAGGAGGAGAACGACGAGGAAGGGAAGGAGGATGGGGCACTGTTTT
CACGGGCGGACGTGCGGGTGATGCTCAGGAGCATGAACATGATGGCCGCT
TTCCTGGGCGACGAGCCTCTACCTGATGAAGAGCTAGACACCCTCCTTTC
TTCTGTCTTCCCTCTATCCTCCTCCCCTTCCCCCTGCCTTTCCTCCTCCA
CCACCTCCTCCTCCACATCCCCAGGCAACCCTTTCGAGGAGGAGGAAGAG
AAAGAAGGGAGGGAGAAAGGGAGGGGGGGAAGGAAGGAGGAGGAAGAGGA
GGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGTGTGTCTACAAGACAGCGA
ACGAAATTTTGACAGGTCTAAAGAAACACGCCTTTGTGAGAGGGACAGCT
GGGGCGGCGGTGAGCACCACCATCACTGCGTCAGGCGAGTGAGGAGGAGC
GAGAGAAGGAAAAAGGGGGGGAGGATAGGTGACAACTGTATGTGATGGAA
AATGAATAGAGTGATGACAGAAGT

protein sequence of jgi.p|Nanoce1779_2|95572

>mRNA_6470-protein ID=mRNA_6470-protein|Name=jgi.p|Nanoce1779_2|95572|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MGQTPSSSLPSSSASSPASFLAINAVAEGCCQRWSKVEMRGLMRRMKALG
ARSGKPTLIYRRDLETAVKETGLSGTTEAEILDKVYTLLDDKGEDQGPLG
TTRRRRNKQEENDEEGKEDGALFSRADVRVMLRSMNMMAAFLGDEPLPDE
ELDTLLSSVFPLSSSPSPCLSSSTTSSSTSPGNPFEEEEEKEGREKGRGG
RKEEEEEEEEEEEEEGECVYKTANEILTGLKKHAFVRGTAGAAVSTTITA
SGE*

mRNA from alignment at scaffold_15:736862..738764+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6470 ID=mRNA_6470|Name=jgi.p|Nanoce1779_2|95572|organism=Nannochloropsis oceanica|type=mRNA|length=1903bp|location=Sequence derived from alignment at scaffold_15:736862..738764+ (Nannochloropsis oceanica)
CATTGGGCCGGCGAGTGAGCATTGGGGGATGGGTGTAAGGAGGCCGTGTC
AGTTGTGCCTGTGTGTTTGTGTCTGGACATCCTCGGCAAATTTACGACAA
GAGTCATAATACTCAATCTTCCCCCTCCCTCCCCTCTCGTCTTTCTTATC
TGCTACGAAACCCTCACACAGGAGGCAAGCATGGGTCAGACACCCTCTTC
CTCCCTTCCCTCCTCCTCCGCCTCCTCCCCCGCCTCCTTCCTCGCCATCA
ACGCCGTGGCCGAGGGATGTTGCCAGCGATGGAGCAAGGTGGAAATGCGT
GGCTTGATGCGGAGAATGAAGGCATTAGGAGCCCGCTCGGTAAGTAAGGA
GAAGAGGAAAGGAAAGGAGAGCAAAAAGAACAAGGAAGGGTCGCGAACGC
GTAAATGCAAAACGGATTTTTTGCTTATCTCTCCTGAAGTCCTGCGCTTT
CTGCCCAGTGTCTGCTTTGCTATTGGTAATCCTTCCGTTCCTTCCTCCCT
CCCTCCCTCCCTTCATGCAGGGGAAGCCGACACTTATCTACCGACGCGAC
CTCGAGACGGCCGTAAAAGAGACGGGGTTGAGCGGGACCACCGAGGCCGA
GATTTTGGGTGCGGCAGAAAACAAGGAGGAAGAGGTGAAAGAACGTTGCC
TGATCTTGCTCCTCATGCCCGCCCCCTTCGTCCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTGTAGACAAAGTCTACACTCTCCTC
GACGACAAGGGCGAGGACCAAGTGCCTTACCAGCAAATAATGATGAGCGT
CGTTCTCCTTCTGCCCGGCGACGACGGTATGCCTGCCCTTCCTCCCCCCC
TTCCCTTCCCTCCTCCCTCCCCCCCTCCTTTCTTCCCTCCCGCCCTCATG
TGCTCCCATCCCATGAATTTCCCCCTTTTAACCCTTACCCTAACAGAGGG
CGGCATGGAGCGAAAATACCATGAGAAACGATGATTTTCACATGAGCATC
CATCCATCGTGAAGAACAGTCGAGCCAATAACAACCTCAATTTCATTCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCTCTCC
TCCCTCAGTGGTAGACAAATTGTCGTTTGCCCTTGAGCTTTACGAGGCTG
GCCGACCCATTCAGAGGGAGGAGGAGGCAGAGGAGGAAGAAGGGGAGGAG
GGACCGCTTGGAACTACCCGGAGGAGGAGGAATAAGCAGGAGGAGAACGA
CGAGGAAGGGAAGGAGGATGGGGCACTGTTTTCACGGGCGGACGTGCGGG
TGATGCTCAGGAGCATGAACATGGTAAGAAAGAGAGGGAGGGGGGGAAGG
GCACGGTACGGGAGGATGTGATGGAAAAGGCGCATTAATTGAAAGTAGTA
TGAAATCATCTTCGCCGTGATCCCTCGGACCAACGCCCTCCCCTCCCTCT
GTCCCTCTCTCCCTCCTCAGATGGCCGCTTTCCTGGGCGACGAGCCTCTA
CCTGATGAAGAGCTAGACACCCTCCTTTCTTCTGTCTTCCCTCTATCCTC
CTCCCCTTCCCCCTGCCTTTCCTCCTCCACCACCTCCTCCTCCACATCCC
CAGGCAACCCTTTCGAGGAGGAGGAAGAGAAAGAAGGGAGGGAGAAAGGG
AGGGGGGGAAGGAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGA
AGAGGGGGAGTGTGTCTACAAGACAGCGAACGAAATTTTGACAGGTCTAA
AGAAACACGCCTTTGTGAGAGGGACAGCTGGGGCGGCGGTGAGCACCACC
ATCACTGCGTCAGGCGAGTGAGGAGGAGCGAGAGAAGGAAAAAGGGGGGG
AGGATAGGTGACAACTGTATGTGATGGAAAATGAATAGAGTGATGACAGA
AGT

Coding sequence (CDS) from alignment at scaffold_15:736862..738764+

>mRNA_6470 ID=mRNA_6470|Name=jgi.p|Nanoce1779_2|95572|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_15:736862..738764+ (Nannochloropsis oceanica)
ATGGGTCAGACACCCTCTTCCTCCCTTCCCTCCTCCTCCGCCTCCTCCCC
CGCCTCCTTCCTCGCCATCAACGCCGTGGCCGAGGGATGTTGCCAGCGAT
GGAGCAAGGTGGAAATGCGTGGCTTGATGCGGAGAATGAAGGCATTAGGA
GCCCGCTCGGGGAAGCCGACACTTATCTACCGACGCGACCTCGAGACGGC
CGTAAAAGAGACGGGGTTGAGCGGGACCACCGAGGCCGAGATTTTGGACA
AAGTCTACACTCTCCTCGACGACAAGGGCGAGGACCAAGGACCGCTTGGA
ACTACCCGGAGGAGGAGGAATAAGCAGGAGGAGAACGACGAGGAAGGGAA
GGAGGATGGGGCACTGTTTTCACGGGCGGACGTGCGGGTGATGCTCAGGA
GCATGAACATGATGGCCGCTTTCCTGGGCGACGAGCCTCTACCTGATGAA
GAGCTAGACACCCTCCTTTCTTCTGTCTTCCCTCTATCCTCCTCCCCTTC
CCCCTGCCTTTCCTCCTCCACCACCTCCTCCTCCACATCCCCAGGCAACC
CTTTCGAGGAGGAGGAAGAGAAAGAAGGGAGGGAGAAAGGGAGGGGGGGA
AGGAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGA
GTGTGTCTACAAGACAGCGAACGAAATTTTGACAGGTCTAAAGAAACACG
CCTTTGTGAGAGGGACAGCTGGGGCGGCGGTGAGCACCACCATCACTGCG
TCAGGCGAGTGAATGGGTCAGACACCCTCTTCCTCCCTTCCCTCCTCCTC
CGCCTCCTCCCCCGCCTCCTTCCTCGCCATCAACGCCGTGGCCGAGGGAT
GTTGCCAGCGATGGAGCAAGGTGGAAATGCGTGGCTTGATGCGGAGAATG
AAGGCATTAGGAGCCCGCTCGGGGAAGCCGACACTTATCTACCGACGCGA
CCTCGAGACGGCCGTAAAAGAGACGGGGTTGAGCGGGACCACCGAGGCCG
AGATTTTGGACAAAGTCTACACTCTCCTCGACGACAAGGGCGAGGACCAA
GGACCGCTTGGAACTACCCGGAGGAGGAGGAATAAGCAGGAGGAGAACGA
CGAGGAAGGGAAGGAGGATGGGGCACTGTTTTCACGGGCGGACGTGCGGG
TGATGCTCAGGAGCATGAACATGATGGCCGCTTTCCTGGGCGACGAGCCT
CTACCTGATGAAGAGCTAGACACCCTCCTTTCTTCTGTCTTCCCTCTATC
CTCCTCCCCTTCCCCCTGCCTTTCCTCCTCCACCACCTCCTCCTCCACAT
CCCCAGGCAACCCTTTCGAGGAGGAGGAAGAGAAAGAAGGGAGGGAGAAA
GGGAGGGGGGGAAGGAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGA
GGAAGAGGGGGAGTGTGTCTACAAGACAGCGAACGAAATTTTGACAGGTC
TAAAGAAACACGCCTTTGTGAGAGGGACAGCTGGGGCGGCGGTGAGCACC
ACCATCACTGCGTCAGGCGAGTGAATGGGTCAGACACCCTCTTCCTCCCT
TCCCTCCTCCTCCGCCTCCTCCCCCGCCTCCTTCCTCGCCATCAACGCCG
TGGCCGAGGGATGTTGCCAGCGATGGAGCAAGGTGGAAATGCGTGGCTTG
ATGCGGAGAATGAAGGCATTAGGAGCCCGCTCGGGGAAGCCGACACTTAT
CTACCGACGCGACCTCGAGACGGCCGTAAAAGAGACGGGGTTGAGCGGGA
CCACCGAGGCCGAGATTTTGGACAAAGTCTACACTCTCCTCGACGACAAG
GGCGAGGACCAAGGACCGCTTGGAACTACCCGGAGGAGGAGGAATAAGCA
GGAGGAGAACGACGAGGAAGGGAAGGAGGATGGGGCACTGTTTTCACGGG
CGGACGTGCGGGTGATGCTCAGGAGCATGAACATGATGGCCGCTTTCCTG
GGCGACGAGCCTCTACCTGATGAAGAGCTAGACACCCTCCTTTCTTCTGT
CTTCCCTCTATCCTCCTCCCCTTCCCCCTGCCTTTCCTCCTCCACCACCT
CCTCCTCCACATCCCCAGGCAACCCTTTCGAGGAGGAGGAAGAGAAAGAA
GGGAGGGAGAAAGGGAGGGGGGGAAGGAAGGAGGAGGAAGAGGAGGAGGA
GGAGGAGGAGGAGGAAGAGGGGGAGTGTGTCTACAAGACAGCGAACGAAA
TTTTGACAGGTCTAAAGAAACACGCCTTTGTGAGAGGGACAGCTGGGGCG
GCGGTGAGCACCACCATCACTGCGTCAGGCGAGTGAATGGGTCAGACACC
CTCTTCCTCCCTTCCCTCCTCCTCCGCCTCCTCCCCCGCCTCCTTCCTCG
CCATCAACGCCGTGGCCGAGGGATGTTGCCAGCGATGGAGCAAGGTGGAA
ATGCGTGGCTTGATGCGGAGAATGAAGGCATTAGGAGCCCGCTCGGGGAA
GCCGACACTTATCTACCGACGCGACCTCGAGACGGCCGTAAAAGAGACGG
GGTTGAGCGGGACCACCGAGGCCGAGATTTTGGACAAAGTCTACACTCTC
CTCGACGACAAGGGCGAGGACCAAGGACCGCTTGGAACTACCCGGAGGAG
GAGGAATAAGCAGGAGGAGAACGACGAGGAAGGGAAGGAGGATGGGGCAC
TGTTTTCACGGGCGGACGTGCGGGTGATGCTCAGGAGCATGAACATGATG
GCCGCTTTCCTGGGCGACGAGCCTCTACCTGATGAAGAGCTAGACACCCT
CCTTTCTTCTGTCTTCCCTCTATCCTCCTCCCCTTCCCCCTGCCTTTCCT
CCTCCACCACCTCCTCCTCCACATCCCCAGGCAACCCTTTCGAGGAGGAG
GAAGAGAAAGAAGGGAGGGAGAAAGGGAGGGGGGGAAGGAAGGAGGAGGA
AGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGTGTGTCTACAAGA
CAGCGAACGAAATTTTGACAGGTCTAAAGAAACACGCCTTTGTGAGAGGG
ACAGCTGGGGCGGCGGTGAGCACCACCATCACTGCGTCAGGCGAGTGAAT
GGGTCAGACACCCTCTTCCTCCCTTCCCTCCTCCTCCGCCTCCTCCCCCG
CCTCCTTCCTCGCCATCAACGCCGTGGCCGAGGGATGTTGCCAGCGATGG
AGCAAGGTGGAAATGCGTGGCTTGATGCGGAGAATGAAGGCATTAGGAGC
CCGCTCGGGGAAGCCGACACTTATCTACCGACGCGACCTCGAGACGGCCG
TAAAAGAGACGGGGTTGAGCGGGACCACCGAGGCCGAGATTTTGGACAAA
GTCTACACTCTCCTCGACGACAAGGGCGAGGACCAAGGACCGCTTGGAAC
TACCCGGAGGAGGAGGAATAAGCAGGAGGAGAACGACGAGGAAGGGAAGG
AGGATGGGGCACTGTTTTCACGGGCGGACGTGCGGGTGATGCTCAGGAGC
ATGAACATGATGGCCGCTTTCCTGGGCGACGAGCCTCTACCTGATGAAGA
GCTAGACACCCTCCTTTCTTCTGTCTTCCCTCTATCCTCCTCCCCTTCCC
CCTGCCTTTCCTCCTCCACCACCTCCTCCTCCACATCCCCAGGCAACCCT
TTCGAGGAGGAGGAAGAGAAAGAAGGGAGGGAGAAAGGGAGGGGGGGAAG
GAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGT
GTGTCTACAAGACAGCGAACGAAATTTTGACAGGTCTAAAGAAACACGCC
TTTGTGAGAGGGACAGCTGGGGCGGCGGTGAGCACCACCATCACTGCGTC
AGGCGAGTGA

Synonyms

Publications