jgi.p|Nanoce1779_2|98391, mRNA_11396 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|98391
Unique NamemRNA_11396
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2035
Alignment locationscaffold_156:17496..19530 -

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Properties
Property NameValue
TranscriptId98477
TrackFilteredModels2
ProteinId98391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_156supercontigscaffold_156:17496..19530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|98391gene_11396Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|98391mRNA_11396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11396CDS_11396Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11396 ID=mRNA_11396|Name=jgi.p|Nanoce1779_2|98391|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp
TTTACAGCGCCCTCTCCTCCTTCACGGGTCTCCGCCTCCCCAACGACCTC
GGTATCCTCCTAGATATCTCTCGGCTTAGTGGGACCCTCCACCTGCAAAG
CAACAGCACTGCCGTCCTTCTCCCCGATCTTTCCGCCTACAACGGTGTCG
TGCACGGCCTCTCTGGAGTCCTCCCCCTCCCCGAAGACATTCCCGCCGTC
CTCGCCTCCCCCCCTCCCTCCCTCGCCGCTGCCGGGAACTTCTCCATCCT
CTCTCAATTAATGCAAGCAGCGGTCTCATCAGGCACTGCTCCAGAACTTG
CGAGTGGCGGTCCCTTCACTTATCTGGCACCAACAGATGCTGCTTTTGCT
GCTGCCTTTGAGGAAGGACGATTACCCAGGTTGCCTGTGTTGCTGCAGGA
TCTGGAAAGAGTGGTCTCGCTGTGTAGGTACTGGGCGATGAATTCGACGG
AGGGGCTATTGTTATTTTCTCCTGACCCGTACATGGATCCGTTTAGGGAT
GATTTTGTGGACGGTGCGAAGTTGGAGGATGGGGAGGGGAGGGGTGTGTG
GGTGAAGAGGCTGGTGGTGGAGGGGAGTACGAGCCTGGAAGGGAAGGTTG
ATGACGTAGTGGTGTTTTTGAACAATGCGCGGCTGTACCAGTGTCTAGAG
GGAAAGGGGATGGGGCATGCGTGTGGGACGCGGCCGACGCCTAGTAATAC
CTACAGCATTAATGATGACCGAGTGGTCAACATGGTGCACGCTCTCGACG
CTGTCCCCCTCCCTCCCTCCGCCGGCACCTTATTCCAAGCTCTGCAGCAA
GACCCGGACCTGAGCTCTTTCTTTGCTCTTCTGCTGAATAGCCCCACAAA
TGCTGAACTGGTTGTGCGGTTGAATACCACCAGCACCAACAGTGAGGAGG
AGCTATTCACGCTTTGGGCGCCAACCAACGATGCTCTCACAGCCTTACAA
GCAGCTCGACCTTGGCTCCTGACGGCCTCTGAAGTTGTAGACGAAGTTCT
CCGCTATCACTTCACGCCCCACCTGTGGTATTCACGCTGGATAGGCCCTT
CCAAGTCACTACCCACTCTTGCCTTCGATGGAGAAGCGCTCGTCCTCGTC
AATGCTTCAACGGCACCAGCACCAGCTGTACCAGCAGTAGCTCTGCAAAT
AAACCGAATAGCGGTATTGGAAAGTGATTTAACGGCTAGTAATGGCGTGC
TGCACAAGCTGAGTGGTGTCCTCGTTCCTGACCTTCTCCAAATTGCCTAT
TCCTCTGGAGGGTTGCAACGCACTGTTGCAGCTCTGGAAGGAGGGGGAGA
AGGGGAAGACAGTTTGGCGCAGGTTTTGGGAGGACCAGGTCCTTTTACTC
TTTTTGGGCCATTGGACAGTGTCTTTGAGGCAGCGGATGCTGTTGTTACT
GCGGATGTTGCTGCTCGTGCTGCTGCTGCTGCTGCTGAGGGCAGGGGAGT
TTCCTTGACGCCGACGGAATTGCAGTATCACATAGGGGCGAGTCTAGTGC
AGCCTGAAGATATCGTGACCCGCGAGGAAACGGCGGCAACATTCGTCTGT
GACTCTCTCCTGGGTCTTCCCCTCTACCTATCCTTCGTCAACGCCACTAC
CTCCCACGCCTACGCCCCGTCCCAGAGCGGCCTCTTTGTCAATCAAGCCG
AATTGCGTGTCCCCGTTCATCGAGCTTTGAATGGATTGGTTTATGCGGTG
GATGCTTTTCTACAGCCACCAACTCAGAGCATCATGGCCCTCCTCCGCGG
CAAGAGGATGGGCGGGCATTCGCCTCCCTCCTAACCCAAACCGGGCTCCA
CACTCAGCTCGAGGGCGAAGGGGAGGGTAGTCCTTGGACGGTGTTTGCGC
CCAGGACAGCAGTGCTGGAAGGGCTATACCTGAAAGAAGACATCTGGTCA
GATGTAAAGCAAGCGCCTCAGCTCCTGGCTTTTCATCTTGTCAGTGGCCG
GCGTCTCTTCACCCCGGCCTTTTCCAACGTTACCTCGTGTACAAGCAACT
GTGAGGACTTTTGCCTGGGCCCAATTGACGTTTTC
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protein sequence of jgi.p|Nanoce1779_2|98391

>mRNA_11396-protein ID=mRNA_11396-protein|Name=jgi.p|Nanoce1779_2|98391|organism=Nannochloropsis oceanica|type=polypeptide|length=508bp
MQAAVSSGTAPELASGGPFTYLAPTDAAFAAAFEEGRLPRLPVLLQDLER
VVSLCRYWAMNSTEGLLLFSPDPYMDPFRDDFVDGAKLEDGEGRGVWVKR
LVVEGSTSLEGKVDDVVVFLNNARLYQCLEGKGMGHACGTRPTPSNTYSI
NDDRVVNMVHALDAVPLPPSAGTLFQALQQDPDLSSFFALLLNSPTNAEL
VVRLNTTSTNSEEELFTLWAPTNDALTALQAARPWLLTASEVVDEVLRYH
FTPHLWYSRWIGPSKSLPTLAFDGEALVLVNASTAPAPAVPAVALQINRI
AVLESDLTASNGVLHKLSGVLVPDLLQIAYSSGGLQRTVAALEGGGEGED
SLAQVLGGPGPFTLFGPLDSVFEAADAVVTADVAARAAAAAAEGRGVSLT
PTELQYHIGASLVQPEDIVTREETAATFVCDSLLGLPLYLSFVNATTSHA
YAPSQSGLFVNQAELRVPVHRALNGLVYAVDAFLQPPTQSIMALLRGKRM
GGHSPPS*
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mRNA from alignment at scaffold_156:17496..19530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11396 ID=mRNA_11396|Name=jgi.p|Nanoce1779_2|98391|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp|location=Sequence derived from alignment at scaffold_156:17496..19530- (Nannochloropsis oceanica)
TTTACAGCGCCCTCTCCTCCTTCACGGGTCTCCGCCTCCCCAACGACCTC
GGTATCCTCCTAGATATCTCTCGGCTTAGTGGGACCCTCCACCTGCAAAG
CAACAGCACTGCCGTCCTTCTCCCCGATCTTTCCGCCTACAACGGTGTCG
TGCACGGCCTCTCTGGAGTCCTCCCCCTCCCCGAAGACATTCCCGCCGTC
CTCGCCTCCCCCCCTCCCTCCCTCGCCGCTGCCGGGAACTTCTCCATCCT
CTCTCAATTAATGCAAGCAGCGGTCTCATCAGGCACTGCTCCAGAACTTG
CGAGTGGCGGTCCCTTCACTTATCTGGCACCAACAGATGCTGCTTTTGCT
GCTGCCTTTGAGGAAGGACGATTACCCAGGTTGCCTGTGTTGCTGCAGGA
TCTGGAAAGAGTGGTCTCGCTGTGTAGGTACTGGGCGATGAATTCGACGG
AGGGGCTATTGTTATTTTCTCCTGACCCGTACATGGATCCGTTTAGGGAT
GATTTTGTGGACGGTGCGAAGTTGGAGGATGGGGAGGGGAGGGGTGTGTG
GGTGAAGAGGCTGGTGGTGGAGGGGAGTACGAGCCTGGAAGGGAAGGTTG
ATGACGTAGTGGTGTTTTTGAACAATGCGCGGCTGTACCAGTGTCTAGAG
GGAAAGGGGATGGGGCATGCGTGTGGGACGCGGCCGACGCCTAGTAATAC
CTACAGCATTAATGATGACCGAGTGGTCAACATGGTGCACGCTCTCGACG
CTGTCCCCCTCCCTCCCTCCGCCGGCACCTTATTCCAAGCTCTGCAGCAA
GACCCGGACCTGAGCTCTTTCTTTGCTCTTCTGCTGAATAGCCCCACAAA
TGCTGAACTGGTTGTGCGGTTGAATACCACCAGCACCAACAGTGAGGAGG
AGCTATTCACGCTTTGGGCGCCAACCAACGATGCTCTCACAGCCTTACAA
GCAGCTCGACCTTGGCTCCTGACGGCCTCTGAAGTTGTAGACGAAGTTCT
CCGCTATCACTTCACGCCCCACCTGTGGTATTCACGCTGGATAGGCCCTT
CCAAGTCACTACCCACTCTTGCCTTCGATGGAGAAGCGCTCGTCCTCGTC
AATGCTTCAACGGCACCAGCACCAGCTGTACCAGCAGTAGCTCTGCAAAT
AAACCGAATAGCGGTATTGGAAAGTGATTTAACGGCTAGTAATGGCGTGC
TGCACAAGCTGAGTGGTGTCCTCGTTCCTGACCTTCTCCAAATTGCCTAT
TCCTCTGGAGGGTTGCAACGCACTGTTGCAGCTCTGGAAGGAGGGGGAGA
AGGGGAAGACAGTTTGGCGCAGGTTTTGGGAGGACCAGGTCCTTTTACTC
TTTTTGGGCCATTGGACAGTGTCTTTGAGGCAGCGGATGCTGTTGTTACT
GCGGATGTTGCTGCTCGTGCTGCTGCTGCTGCTGCTGAGGGCAGGGGAGT
TTCCTTGACGCCGACGGAATTGCAGTATCACATAGGGGCGAGTCTAGTGC
AGCCTGAAGATATCGTGACCCGCGAGGAAACGGCGGCAACATTCGTCTGT
GACTCTCTCCTGGGTCTTCCCCTCTACCTATCCTTCGTCAACGCCACTAC
CTCCCACGCCTACGCCCCGTCCCAGAGCGGCCTCTTTGTCAATCAAGCCG
AATTGCGTGTCCCCGTTCATCGAGCTTTGAATGGATTGGTTTATGCGGTG
GATGCTTTTCTACAGCCACCAACTCAGAGCATCATGGCCCTCCTCCGCGG
CAAGAGGATGGGCGGGCATTCGCCTCCCTCCTAACCCAAACCGGGCTCCA
CACTCAGCTCGAGGGCGAAGGGGAGGGTAGTCCTTGGACGGTGTTTGCGC
CCAGGACAGCAGTGCTGGAAGGGCTATACCTGAAAGAAGACATCTGGTCA
GATGTAAAGCAAGCGCCTCAGCTCCTGGCTTTTCATCTTGTCAGTGGCCG
GCGTCTCTTCACCCCGGCCTTTTCCAACGTTACCTCGTGTACAAGCAACT
GTGAGGACTTTTGCCTGGGCCCAATTGACGTTTTC
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Coding sequence (CDS) from alignment at scaffold_156:17496..19530-

>mRNA_11396 ID=mRNA_11396|Name=jgi.p|Nanoce1779_2|98391|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_156:17496..19530- (Nannochloropsis oceanica)
ATGCAAGCAGCGGTCTCATCAGGCACTGCTCCAGAACTTGCGAGTGGCGG
TCCCTTCACTTATCTGGCACCAACAGATGCTGCTTTTGCTGCTGCCTTTG
AGGAAGGACGATTACCCAGGTTGCCTGTGTTGCTGCAGGATCTGGAAAGA
GTGGTCTCGCTGTGTAGGTACTGGGCGATGAATTCGACGGAGGGGCTATT
GTTATTTTCTCCTGACCCGTACATGGATCCGTTTAGGGATGATTTTGTGG
ACGGTGCGAAGTTGGAGGATGGGGAGGGGAGGGGTGTGTGGGTGAAGAGG
CTGGTGGTGGAGGGGAGTACGAGCCTGGAAGGGAAGGTTGATGACGTAGT
GGTGTTTTTGAACAATGCGCGGCTGTACCAGTGTCTAGAGGGAAAGGGGA
TGGGGCATGCGTGTGGGACGCGGCCGACGCCTAGTAATACCTACAGCATT
AATGATGACCGAGTGGTCAACATGGTGCACGCTCTCGACGCTGTCCCCCT
CCCTCCCTCCGCCGGCACCTTATTCCAAGCTCTGCAGCAAGACCCGGACC
TGAGCTCTTTCTTTGCTCTTCTGCTGAATAGCCCCACAAATGCTGAACTG
GTTGTGCGGTTGAATACCACCAGCACCAACAGTGAGGAGGAGCTATTCAC
GCTTTGGGCGCCAACCAACGATGCTCTCACAGCCTTACAAGCAGCTCGAC
CTTGGCTCCTGACGGCCTCTGAAGTTGTAGACGAAGTTCTCCGCTATCAC
TTCACGCCCCACCTGTGGTATTCACGCTGGATAGGCCCTTCCAAGTCACT
ACCCACTCTTGCCTTCGATGGAGAAGCGCTCGTCCTCGTCAATGCTTCAA
CGGCACCAGCACCAGCTGTACCAGCAGTAGCTCTGCAAATAAACCGAATA
GCGGTATTGGAAAGTGATTTAACGGCTAGTAATGGCGTGCTGCACAAGCT
GAGTGGTGTCCTCGTTCCTGACCTTCTCCAAATTGCCTATTCCTCTGGAG
GGTTGCAACGCACTGTTGCAGCTCTGGAAGGAGGGGGAGAAGGGGAAGAC
AGTTTGGCGCAGGTTTTGGGAGGACCAGGTCCTTTTACTCTTTTTGGGCC
ATTGGACAGTGTCTTTGAGGCAGCGGATGCTGTTGTTACTGCGGATGTTG
CTGCTCGTGCTGCTGCTGCTGCTGCTGAGGGCAGGGGAGTTTCCTTGACG
CCGACGGAATTGCAGTATCACATAGGGGCGAGTCTAGTGCAGCCTGAAGA
TATCGTGACCCGCGAGGAAACGGCGGCAACATTCGTCTGTGACTCTCTCC
TGGGTCTTCCCCTCTACCTATCCTTCGTCAACGCCACTACCTCCCACGCC
TACGCCCCGTCCCAGAGCGGCCTCTTTGTCAATCAAGCCGAATTGCGTGT
CCCCGTTCATCGAGCTTTGAATGGATTGGTTTATGCGGTGGATGCTTTTC
TACAGCCACCAACTCAGAGCATCATGGCCCTCCTCCGCGGCAAGAGGATG
GGCGGGCATTCGCCTCCCTCCTAA
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Synonyms
Publications