jgi.p|Nanoce1779_2|631639, mRNA_7089 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631639
Unique Name	mRNA_7089
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1778
Alignment location	scaffold_16:273180..275190 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	631725
Track	FilteredModels2
ProteinId	631639

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:273180..275190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631639	gene_7089	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631639	mRNA_7089-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7089	CDS_7089	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:273180..275190+
coding sequence from alignment at scaffold_16:273180..275190+

mRNA sequence

>mRNA_7089 ID=mRNA_7089|Name=jgi.p|Nanoce1779_2|631639|organism=Nannochloropsis oceanica|type=mRNA|length=1778bp
AACAGGAACGGATGGAGCAAGACGAAGACAACGTGGACGATGTCATTATT
CAGACGGTGGGGAAGATCCTGAAGGAGGGGTTCCGGCAGGGTCAGCTGGC
CCCCAGCAGCACTGCAAATCAAGCCCTGCATGCCATCGACGGGGGCACCA
AAGAGCGGCTCCTCGCGCCTCTGGCCACCGCCCTTGCGAGAAGCATCAGC
ACGGAGAAAGAGGCCCAACAACAATGTGAGCACGTGCGGCGTATTACGGA
AGCGGTTCTGACAAAAGGATTGAAAGGATTAATTGTGGTCAAGACTGAAG
AAGAGGAGGCCGAGGGCGAAGAGGAGGACAAAGTCGGCAACGAAGACGAA
GACGACCCTTGGAGCAGTGGCGGCGGCGGAGGCGGTGGCGACGCAACCAG
TTTATCATCCTACTCGATCTTTGGTCCCGGTTATAATAAAGACAAGGGCG
GTTCGTTCTCCCTTTTTTCAATGCTGGAGATCCCAGACGTGGTGATGGTG
GATTTGGGGATGGTCGCCAGACAGCTGCAGGAAACGATGAAAAGAGAGCA
AAAGGAGGGGTTGCGAGCACTCGAGAACTCTCTGTTGGGAGATCTTACAT
ACAGCGAGCATTGGCCGGATATCTGTGAGGGGTTGGCGAGGCTTTTGACC
GTACCAGGAGGGAAGGAGAAAGGAATGGAAGAGGGGGAAGAGGAGGGAGA
GGAGTACGCCGTTCCCATGCGGACCGTGAAGCTCTATCGGAAACTGTTCG
ACTGCCTGACAAGACCGCTCCCTCCACTCGATTCTCATCTGGACCTGCCT
CCTGCTCCGCACCTTAACCCTTTCTCCTTTCCTTCCTCCCTCGCTTCTTC
TCTCCCCTGCGCATTTTTTGGCGGTGGTAGATGGGAAAGCGGAATGGTTT
AGGCAGTGGTGTCTGCGTTTACCTCCTACCTTGATGTCTTACATGGTTGC
ACGGACAGGCTTACTAGAGGACCTTTTGCAGCAGCAGCAGCCGCAGGAGC
AGCAGCAACAGCAACAGCAACAGCAGGGCCAAGCATCATTAAACATTCAA
AATTTTAGTAATAGCAATTGTGGCAGTAAAGATACCAGCAGCAGCAATAG
CACCAGCAGCAGCACCACCAGTAACCCCTCCGATGTGCACGTAATGCCGC
TGCCGCCTCCTCCTATGCAAGTCGTCTACCTCGACAGGACAGAAAAACAG
CCATCCATCTCCTCTCACAGTTTGCCCTCCACATTCAGCGCGAGTCTGGT
TGCAAAGCAGTGGCAGACAGCAGGCATGTGCATGCTCTCCCATCTTTGCA
CGACGTCCTCCCTCCTTTTCGACGAACGGCAGCAGCACCGGCAGCAACAA
CACCAACAACAGGATAACGAAAAGGCGCAAGCGACTGACGGCTGTGTTGA
ATCAATCCTTCCGTTATGGAGAGGGACACCTGTCCTCTTTCCAGAGCAGC
TGCCAACGGGTCCTTGTGATGTCAACCTCACCCTGCCTGATCCCGCCACG
GGCATGCGCCTCCACCTCCACATTAAGACTTTTCCGTTGCCTTCGTCGTC
ACATTCTTTCCCGTCAGACGTGGAGGTTGCTGCTTGTCCTTTCTCGCCCC
CTCTTCCTCTTTCTTCTTCCCGGTTTTCGTACCTCGCGCGCTTGGCTGAA
CTCTTCCTCACCACCATGTTAGCCCTAGACAAAGAGCAAGCAGCAGCAAC
ATCACCAGCAGTAGCAGAGGAACGACGAAAGGCAACAGCAACAGCAACCG
CAGTAGCAGCAGCAGCAGCAACAGCAGC

protein sequence of jgi.p|Nanoce1779_2|631639

>mRNA_7089-protein ID=mRNA_7089-protein|Name=jgi.p|Nanoce1779_2|631639|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MEQDEDNVDDVIIQTVGKILKEGFRQGQLAPSSTANQALHAIDGGTKERL
LAPLATALARSISTEKEAQQQCEHVRRITEAVLTKGLKGLIVVKTEEEEA
EGEEEDKVGNEDEDDPWSSGGGGGGGDATSLSSYSIFGPGYNKDKGGSFS
LFSMLEIPDVVMVDLGMVARQLQETMKREQKEGLRALENSLLGDLTYSEH
WPDICEGLARLLTVPGGKEKGMEEGEEEGEEYAVPMRTVKLYRKLFDCLT
RPLPPLDSHLDLPPAPHLNPFSFPSSLASSLPCAFFGGGRWESGMV*

mRNA from alignment at scaffold_16:273180..275190+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7089 ID=mRNA_7089|Name=jgi.p|Nanoce1779_2|631639|organism=Nannochloropsis oceanica|type=mRNA|length=2011bp|location=Sequence derived from alignment at scaffold_16:273180..275190+ (Nannochloropsis oceanica)
AACAGGAACGGATGGAGCAAGACGAAGACAACGTGGACGATGTCATTATT
CAGACGGTGGGGAAGATCCTGAAGGAGGGGTTCCGGCAGGGTCAGCTGGC
CCCCAGCAGCACTGCAAATCAAGCCCTGCATGCCATCGACGGGGGCACCA
AAGAGCGGCTCCTCGCGCCTCTGGCCACCGCCCTTGCGAGAAGCATCAGC
ACGGAGAAAGAGGCCCAACAACAATGTGAGCACGTGCGGCGTATTACGGA
AGCGGTTCTGACAAAAGGATTGAAAGGATTAATTGTGGTCAAGACTGAAG
AAGAGGAGGCCGAGGGCGAAGAGGAGGACAAAGTCGGCAACGAAGACGAA
GACGACCCTTGGAGCAGTGGCGGCGGCGGAGGCGGTGGCGACGCAACCAG
TTTATCATCCTACTCGATCTTTGGTCCCGGTTATAATAAAGACAAGGGCG
GTTCGTTCTCCCTTTTTTCAATGCTGGAGATCCCAGACGTGGTGATGGTG
GATTTGGGGATGGTCGCCAGACAGCTGCAGGAAACGATGAAAAGAGAGCA
AAAGGAGGGGTTGCGAGCACTCGAGAACTCTCTGTTGGGAGATCTTACAT
ACAGCGAGCATTGGCCGGATATCTGTGAGGGGTTGGCGAGGCTTTTGACC
GTACCAGGAGGGAAGGAGAAAGGAATGGAAGAGGGGGAAGAGGAGGGAGA
GGAGTACGCCGTTCCCATGCGGACCGTGAAGCTCTATCGGAAACTGTTCG
ACTGCCTGACAAGTAGACAACGCGCTGATATCTATCTAGCTGTCACGATC
GATATCATTCAAACCTTTCGCACCCAAATCTGGGTCCTCCCCCCTCCTTC
CTTCCCTTCCTCTTCCTCCTCTACCTCTCCTCCCTCCCTCGCCTCTCTCC
TGGAAGCTACTCCGGCAGGATGTCTTCTTTGGGCAAAGATACAGCTCTTT
CACAACATGCAAAAAGAAATGCCCGCCATGTTTCCCCATCTTCAGGACCG
CTCCCTCCACTCGATTCTCATCTGGACCTGCCTCCTGCTCCGCACCTTAA
CCCTTTCTCCTTTCCTTCCTCCCTCGCTTCTTCTCTCCCCTGCGCATTTT
TTGGCGGTGGTAGATGGGAAAGCGGAATGGTTTAGGCAGTGGTGTCTGCG
TTTACCTCCTACCTTGATGTCTTACATGGTTGCACGGACAGGCTTACTAG
AGGACCTTTTGCAGCAGCAGCAGCCGCAGGAGCAGCAGCAACAGCAACAG
CAACAGCAGGGCCAAGCATCATTAAACATTCAAAATTTTAGTAATAGCAA
TTGTGGCAGTAAAGATACCAGCAGCAGCAATAGCACCAGCAGCAGCACCA
CCAGTAACCCCTCCGATGTGCACGTAATGCCGCTGCCGCCTCCTCCTATG
CAAGTCGTCTACCTCGACAGGACAGAAAAACAGCCATCCATCTCCTCTCA
CAGTTTGCCCTCCACATTCAGCGCGAGTCTGGTTGCAAAGCAGTGGCAGA
CAGCAGGCATGTGCATGCTCTCCCATCTTTGCACGACGTCCTCCCTCCTT
TTCGACGAACGGCAGCAGCACCGGCAGCAACAACACCAACAACAGGATAA
CGAAAAGGCGCAAGCGACTGACGGCTGTGTTGAATCAATCCTTCCGTTAT
GGAGAGGGACACCTGTCCTCTTTCCAGAGCAGCTGCCAACGGGTCCTTGT
GATGTCAACCTCACCCTGCCTGATCCCGCCACGGGCATGCGCCTCCACCT
CCACATTAAGACTTTTCCGTTGCCTTCGTCGTCACATTCTTTCCCGTCAG
ACGTGGAGGTTGCTGCTTGTCCTTTCTCGCCCCCTCTTCCTCTTTCTTCT
TCCCGGTTTTCGTACCTCGCGCGCTTGGCTGAACTCTTCCTCACCACCAT
GTTAGCCCTAGACAAAGAGCAAGCAGCAGCAACATCACCAGCAGTAGCAG
AGGAACGACGAAAGGCAACAGCAACAGCAACCGCAGTAGCAGCAGCAGCA
GCAACAGCAGC

Coding sequence (CDS) from alignment at scaffold_16:273180..275190+

>mRNA_7089 ID=mRNA_7089|Name=jgi.p|Nanoce1779_2|631639|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_16:273180..275190+ (Nannochloropsis oceanica)
ATGGAGCAAGACGAAGACAACGTGGACGATGTCATTATTCAGACGGTGGG
GAAGATCCTGAAGGAGGGGTTCCGGCAGGGTCAGCTGGCCCCCAGCAGCA
CTGCAAATCAAGCCCTGCATGCCATCGACGGGGGCACCAAAGAGCGGCTC
CTCGCGCCTCTGGCCACCGCCCTTGCGAGAAGCATCAGCACGGAGAAAGA
GGCCCAACAACAATGTGAGCACGTGCGGCGTATTACGGAAGCGGTTCTGA
CAAAAGGATTGAAAGGATTAATTGTGGTCAAGACTGAAGAAGAGGAGGCC
GAGGGCGAAGAGGAGGACAAAGTCGGCAACGAAGACGAAGACGACCCTTG
GAGCAGTGGCGGCGGCGGAGGCGGTGGCGACGCAACCAGTTTATCATCCT
ACTCGATCTTTGGTCCCGGTTATAATAAAGACAAGGGCGGTTCGTTCTCC
CTTTTTTCAATGCTGGAGATCCCAGACGTGGTGATGGTGGATTTGGGGAT
GGTCGCCAGACAGCTGCAGGAAACGATGAAAAGAGAGCAAAAGGAGGGGT
TGCGAGCACTCGAGAACTCTCTGTTGGGAGATCTTACATACAGCGAGCAT
TGGCCGGATATCTGTGAGGGGTTGGCGAGGCTTTTGACCGTACCAGGAGG
GAAGGAGAAAGGAATGGAAGAGGGGGAAGAGGAGGGAGAGGAGTACGCCG
TTCCCATGCGGACCGTGAAGCTCTATCGGAAACTGTTCGACTGCCTGACA
AGACCGCTCCCTCCACTCGATTCTCATCTGGACCTGCCTCCTGCTCCGCA
CCTTAACCCTTTCTCCTTTCCTTCCTCCCTCGCTTCTTCTCTCCCCTGCG
CATTTTTTGGCGGTGGTAGATGGGAAAGCGGAATGGTTTAGATGGAGCAA
GACGAAGACAACGTGGACGATGTCATTATTCAGACGGTGGGGAAGATCCT
GAAGGAGGGGTTCCGGCAGGGTCAGCTGGCCCCCAGCAGCACTGCAAATC
AAGCCCTGCATGCCATCGACGGGGGCACCAAAGAGCGGCTCCTCGCGCCT
CTGGCCACCGCCCTTGCGAGAAGCATCAGCACGGAGAAAGAGGCCCAACA
ACAATGTGAGCACGTGCGGCGTATTACGGAAGCGGTTCTGACAAAAGGAT
TGAAAGGATTAATTGTGGTCAAGACTGAAGAAGAGGAGGCCGAGGGCGAA
GAGGAGGACAAAGTCGGCAACGAAGACGAAGACGACCCTTGGAGCAGTGG
CGGCGGCGGAGGCGGTGGCGACGCAACCAGTTTATCATCCTACTCGATCT
TTGGTCCCGGTTATAATAAAGACAAGGGCGGTTCGTTCTCCCTTTTTTCA
ATGCTGGAGATCCCAGACGTGGTGATGGTGGATTTGGGGATGGTCGCCAG
ACAGCTGCAGGAAACGATGAAAAGAGAGCAAAAGGAGGGGTTGCGAGCAC
TCGAGAACTCTCTGTTGGGAGATCTTACATACAGCGAGCATTGGCCGGAT
ATCTGTGAGGGGTTGGCGAGGCTTTTGACCGTACCAGGAGGGAAGGAGAA
AGGAATGGAAGAGGGGGAAGAGGAGGGAGAGGAGTACGCCGTTCCCATGC
GGACCGTGAAGCTCTATCGGAAACTGTTCGACTGCCTGACAAGACCGCTC
CCTCCACTCGATTCTCATCTGGACCTGCCTCCTGCTCCGCACCTTAACCC
TTTCTCCTTTCCTTCCTCCCTCGCTTCTTCTCTCCCCTGCGCATTTTTTG
GCGGTGGTAGATGGGAAAGCGGAATGGTTTAG

Synonyms

Publications