jgi.p|Nanoce1779_2|596624, mRNA_6873 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596624
Unique NamemRNA_6873
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length891
Alignment locationscaffold_17:307757..308647 -

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Properties
Property NameValue
TranscriptId596710
TrackFilteredModels2
ProteinId596624
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:307757..308647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596624gene_6873Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596624mRNA_6873-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6873CDS_6873Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6873 ID=mRNA_6873|Name=jgi.p|Nanoce1779_2|596624|organism=Nannochloropsis oceanica|type=mRNA|length=891bp
TTCCAACGGCAGGGCAAATATTGAACGGGCATGTCTTCTTCTGACTACTG
TCTCTCACCCTCTACACTCTAAATACACAGGTAGATCATGCTGCGACCAC
CTTGGCATCGTCCTCACCTGTCTCTCTCCTGTGTTTCCATCTTGACTCTC
ATCCTTCTGCACCAGTCTAGGTAAGATGAGCTTACTCCCTTGCCTTAATC
TTTGACCCATCATGACACTGCCATGACACAAGGATGCACAGGAAGGCCAA
AGCTCACATTCAAAGTGGTGAACCCCCAATCACACAATACGATGACAGTG
CATTCAATATACTCTCCGGCGTCCCAGCCACCATCTATGCAAGACCCATT
GCCACCCCCCGCCACTCCAACCTCCTGCACACAACCATCACCACCAGCAC
CACCCTCTTCTCTTCACCAAACCCTGAGCAGCTGTCACTACAACCTCGCG
TCGAACTCCCCATACCACAAGGATACAATAGGGTAGAAATCAGCTATTGT
ATTGGATGTAGGTGGATGCTCCGGGCTGCTTGGCTTGCCCAAGAGCTTCT
CACGACCTTCCAAGACGAGCTTCACGAAGTAGCCATCCAGCCTGTCAAAC
ACCCGGCGGGGACTTTCGAAGTCCGACTCAATAAGCGGTTGCTGTTTGCT
CGCAAGGCGGAGGGTCGTTTTCCCGAAGCGAAAGAGGTCAAGCAGCTGGT
GCGGGACGTAATCAATCCTGGTCGCGATTTGGGGCATTCGGACGTAGGAG
AAAAATAGACGAAGCTGAGATAGTGAGATAGCAGAGGCTGTCTAAATAGA
CAGAGGTTTGAGACATACAGAAAAAAAGGAAGGAAACTCAACGTAGAAAC
CAGCACATTAAGATTAACGAGGACAAATGAGAATACCTTCG
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protein sequence of jgi.p|Nanoce1779_2|596624

>mRNA_6873-protein ID=mRNA_6873-protein|Name=jgi.p|Nanoce1779_2|596624|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MHRKAKAHIQSGEPPITQYDDSAFNILSGVPATIYARPIATPRHSNLLHT
TITTSTTLFSSPNPEQLSLQPRVELPIPQGYNRVEISYCIGCRWMLRAAW
LAQELLTTFQDELHEVAIQPVKHPAGTFEVRLNKRLLFARKAEGRFPEAK
EVKQLVRDVINPGRDLGHSDVGEK*
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mRNA from alignment at scaffold_17:307757..308647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6873 ID=mRNA_6873|Name=jgi.p|Nanoce1779_2|596624|organism=Nannochloropsis oceanica|type=mRNA|length=891bp|location=Sequence derived from alignment at scaffold_17:307757..308647- (Nannochloropsis oceanica)
TTCCAACGGCAGGGCAAATATTGAACGGGCATGTCTTCTTCTGACTACTG
TCTCTCACCCTCTACACTCTAAATACACAGGTAGATCATGCTGCGACCAC
CTTGGCATCGTCCTCACCTGTCTCTCTCCTGTGTTTCCATCTTGACTCTC
ATCCTTCTGCACCAGTCTAGGTAAGATGAGCTTACTCCCTTGCCTTAATC
TTTGACCCATCATGACACTGCCATGACACAAGGATGCACAGGAAGGCCAA
AGCTCACATTCAAAGTGGTGAACCCCCAATCACACAATACGATGACAGTG
CATTCAATATACTCTCCGGCGTCCCAGCCACCATCTATGCAAGACCCATT
GCCACCCCCCGCCACTCCAACCTCCTGCACACAACCATCACCACCAGCAC
CACCCTCTTCTCTTCACCAAACCCTGAGCAGCTGTCACTACAACCTCGCG
TCGAACTCCCCATACCACAAGGATACAATAGGGTAGAAATCAGCTATTGT
ATTGGATGTAGGTGGATGCTCCGGGCTGCTTGGCTTGCCCAAGAGCTTCT
CACGACCTTCCAAGACGAGCTTCACGAAGTAGCCATCCAGCCTGTCAAAC
ACCCGGCGGGGACTTTCGAAGTCCGACTCAATAAGCGGTTGCTGTTTGCT
CGCAAGGCGGAGGGTCGTTTTCCCGAAGCGAAAGAGGTCAAGCAGCTGGT
GCGGGACGTAATCAATCCTGGTCGCGATTTGGGGCATTCGGACGTAGGAG
AAAAATAGACGAAGCTGAGATAGTGAGATAGCAGAGGCTGTCTAAATAGA
CAGAGGTTTGAGACATACAGAAAAAAAGGAAGGAAACTCAACGTAGAAAC
CAGCACATTAAGATTAACGAGGACAAATGAGAATACCTTCG
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Coding sequence (CDS) from alignment at scaffold_17:307757..308647-

>mRNA_6873 ID=mRNA_6873|Name=jgi.p|Nanoce1779_2|596624|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_17:307757..308647- (Nannochloropsis oceanica)
ATGCACAGGAAGGCCAAAGCTCACATTCAAAGTGGTGAACCCCCAATCAC
ACAATACGATGACAGTGCATTCAATATACTCTCCGGCGTCCCAGCCACCA
TCTATGCAAGACCCATTGCCACCCCCCGCCACTCCAACCTCCTGCACACA
ACCATCACCACCAGCACCACCCTCTTCTCTTCACCAAACCCTGAGCAGCT
GTCACTACAACCTCGCGTCGAACTCCCCATACCACAAGGATACAATAGGG
TAGAAATCAGCTATTGTATTGGATGTAGGTGGATGCTCCGGGCTGCTTGG
CTTGCCCAAGAGCTTCTCACGACCTTCCAAGACGAGCTTCACGAAGTAGC
CATCCAGCCTGTCAAACACCCGGCGGGGACTTTCGAAGTCCGACTCAATA
AGCGGTTGCTGTTTGCTCGCAAGGCGGAGGGTCGTTTTCCCGAAGCGAAA
GAGGTCAAGCAGCTGGTGCGGGACGTAATCAATCCTGGTCGCGATTTGGG
GCATTCGGACGTAGGAGAAAAATAG
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Synonyms
Publications