jgi.p|Nanoce1779_2|651673, mRNA_6643 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651673
Unique NamemRNA_6643
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length812
Alignment locationscaffold_18:348518..349329 +

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Properties
Property NameValue
TranscriptId651759
TrackFilteredModels2
ProteinId651673
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:348518..349329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651673gene_6643Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651673mRNA_6643-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6643CDS_6643Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6643 ID=mRNA_6643|Name=jgi.p|Nanoce1779_2|651673|organism=Nannochloropsis oceanica|type=mRNA|length=812bp
CATCCACCGTCCCTTCCCACATAACAACATGCACTGCTTGCTTGCTGGTT
CCATCAACCACGACCACCAGAGGGACCGTTGGGAGCATGCTTTGGAGCTC
TGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGTTGTGGCTTCCCGTT
CAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGGAGGGCTTGGTGGCT
ATTGGTAAGGGGTGTTGGGAGGGGGGGGGGGGGGAACGTTTGGTGCACGC
GACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGCACGTCTAT
CTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGTGCCAAGGT
GCTCATGCACGAGCGCATTCATACACGCCGACAGGGAAGGGACGCGTACT
GCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCACGAGCAGTA
GAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCATTGGTGTG
GTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCATCTTGACCA
GATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTA
TCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAGGGCGACCGAAAG
TTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAGCACGACCT
CCAACTTGCGTACACGGAAGACTATGAGCCCTATCAGGCCGCAGTTTCGA
AGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAG
AAGAAGGGCTAG
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protein sequence of jgi.p|Nanoce1779_2|651673

>mRNA_6643-protein ID=mRNA_6643-protein|Name=jgi.p|Nanoce1779_2|651673|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MLWSSATKAGAMVWRGVVASRSGKVAYCNAFWKEGLVAIGKGCWEGGGGE
RLVHATAYCPRDVGSFLSARLSRLRCNLCCADKGRCQGAHARAHSYTPTG
KGRVLRGAFSSATDTGARTSSRGESGKPLKGDYQPIGVVAAVAGSTAYGV
HHLDQMEIKRIESESKSEVARIQEKAATEVARIEGDRKLSELFWKAEVER
YKHDLQLAYTEDYEPYQAAVSKTRNKTRGGNGVSEEDEKKG*
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mRNA from alignment at scaffold_18:348518..349329+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6643 ID=mRNA_6643|Name=jgi.p|Nanoce1779_2|651673|organism=Nannochloropsis oceanica|type=mRNA|length=812bp|location=Sequence derived from alignment at scaffold_18:348518..349329+ (Nannochloropsis oceanica)
CATCCACCGTCCCTTCCCACATAACAACATGCACTGCTTGCTTGCTGGTT
CCATCAACCACGACCACCAGAGGGACCGTTGGGAGCATGCTTTGGAGCTC
TGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGTTGTGGCTTCCCGTT
CAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGGAGGGCTTGGTGGCT
ATTGGTAAGGGGTGTTGGGAGGGGGGGGGGGGGGAACGTTTGGTGCACGC
GACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTTATCTGCACGTCTAT
CTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGGGCCGGTGCCAAGGT
GCTCATGCACGAGCGCATTCATACACGCCGACAGGGAAGGGACGCGTACT
GCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGCGCGCACGAGCAGTA
GAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACCAGCCCATTGGTGTG
GTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTCCACCATCTTGACCA
GATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTCGGAGGTTGCTCGTA
TCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTGAGGGCGACCGAAAG
TTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGGTACAAGCACGACCT
CCAACTTGCGTACACGGAAGACTATGAGCCCTATCAGGCCGCAGTTTCGA
AGACAAGAAATAAAACAAGGGGAGGAAACGGAGTATCCGAGGAGGATGAG
AAGAAGGGCTAG
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Coding sequence (CDS) from alignment at scaffold_18:348518..349329+

>mRNA_6643 ID=mRNA_6643|Name=jgi.p|Nanoce1779_2|651673|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_18:348518..349329+ (Nannochloropsis oceanica)
ATGCTTTGGAGCTCTGCCACGAAGGCTGGAGCCATGGTGTGGAGAGGGGT
TGTGGCTTCCCGTTCAGGTAAGGTGGCATATTGTAATGCATTTTGGAAGG
AGGGCTTGGTGGCTATTGGTAAGGGGTGTTGGGAGGGGGGGGGGGGGGAA
CGTTTGGTGCACGCGACCGCATACTGCCCGAGGGATGTTGGTTCGTTTTT
ATCTGCACGTCTATCTCGTTTGAGGTGCAATCTGTGTTGTGCGGACAAGG
GCCGGTGCCAAGGTGCTCATGCACGAGCGCATTCATACACGCCGACAGGG
AAGGGACGCGTACTGCGAGGGGCGTTCTCCTCGGCTACCGACACGGGGGC
GCGCACGAGCAGTAGAGGGGAGTCTGGAAAGCCCTTGAAGGGAGATTACC
AGCCCATTGGTGTGGTGGCTGCGGTTGCGGGCTCTACCGCTTACGGCGTC
CACCATCTTGACCAGATGGAGATAAAGCGCATCGAGAGTGAGAGCAAGTC
GGAGGTTGCTCGTATCCAGGAGAAGGCGGCGACGGAGGTTGCTCGTATTG
AGGGCGACCGAAAGTTGTCAGAGCTTTTCTGGAAGGCAGAGGTAGAGCGG
TACAAGCACGACCTCCAACTTGCGTACACGGAAGACTATGAGCCCTATCA
GGCCGCAGTTTCGAAGACAAGAAATAAAACAAGGGGAGGAAACGGAGTAT
CCGAGGAGGATGAGAAGAAGGGCTAG
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Synonyms
Publications